| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yaeL [C]
Identifier: 91788550
GI number: 91788550
Start: 2829367
End: 2830743
Strand: Reverse
Name: yaeL [C]
Synonym: Bpro_2688
Alternate gene names: 91788550
Gene position: 2830743-2829367 (Counterclockwise)
Preceding gene: 91788551
Following gene: 91788549
Centisome position: 54.43
GC content: 62.96
Gene sequence:
>1377_bases ATGTTGACGCTGCTTGCCTTTGTGGTCGCTCTCGGCATCCTGATTGCCGTGCACGAATACGGTCATTACCGGGTGGCCGT CGCCTGCGGCATCAAGGTGCTGAAGTTTTCCATAGGCTTTGGCAAGCCCATTTACACCTGGCGGCTCAAAAACAAGCCCA CGGAATTTGCGATCGGCATGCTGCCGCTGGGTGGCTACGTCAAGATGCTCGATGAGCGCGAGGCCCCGGTGGATCCGGCC GAACGCCATCTCGCTTTCAACACCCAGCCGCTGAAGTCCCGCGCGGCCGTCGTAGCCGCCGGGCCTGCTGCCAACCTGCT GCTGGCCGTGCTGATTTACGCCATCGTCAACTGGAGCGGCCTGCAGGAGCCCAAGGCCGTTCTGGCCAGCCCTGTTGCCG GCTCCCTGGCAGAGCGGGCCGGGTTGCGCGGCTTTGAGACCGTCCAGCAGGCTGCTTTTGATGGCGATGAGTTGCAGGCG GTCCGTTCTTTTGAAGACCTCCGCTGGCGACTGACGCAGGGTGCGCTGGATGGCCGTGATCTGCAGCTGGTGCTGGGGAA CGACTCGGGCAGTTCGTCACGGACTGTCACGCTGGAGCTCAGCAAGCTCGATGCCGCCGAGGCCGATGCCCAGCTTTTCC GCAAAATCGGCATTCTGGGGCCATGGACCCGCCCGGTGATCGGCGAGGTCATGGCTGGCGGTGCGGCGCAAAAAGCCGGT CTTCGGGCGGGTGACGTGGTCCTGCGCATGGGTAGCACCGCCATTGTGGATGGACAGCAGCTGCGCGAGGCCATACGGGG CTCTGCACGGGCTTCCAGGGGCGATGGCGCGGCAATCGCACCGCAGGACTGGCAAGTCCAGCGTGCCGGCCAGACGCTGG TGCTGCAGGTCGCTCCCGAGATCAAGCGGGAGAGGGGGGTAGCAGTGGCGCGAATCGGCGCCTATGTGGGGGCGCCCCCT GAATTTGTGACGGTGCGCTATGGGCCGCTCGACGGCTTGTGGCAGGGTGTTGTGCGCACCTGGGAAGTGTCCCAGCTGAC GCTCAAGATGATGTGGAAAATGGTGATCGGCGAAGCCTCGCTCAAAAATCTGAGTGGGCCGTTAACCATTGCGGATTACG CCGGCAAGTCGGCCAGCCTGGGCTGGAGCGCCTACCTGCTGTTTCTGGCGCTGATCAGTGTGAGCCTGGGCGTCCTGAAT CTGCTGCCGCTGCCGGTTCTGGATGGTGGGCACCTGATGTATTATCTTTGGGAGGGGATTACGGGTCGAGGCGTGTCTGA TGCCTGGATGGACCGGCTGCAACGCGGTGGCGTTGCGATCCTGTTGGGCATGATGTGTATTGCCCTTTTTAATGATCTCA CCCGGCTATTGGGCTAA
Upstream 100 bases:
>100_bases ATGGCGGTCTCAGATGTGAACGATATCGAGGGATTGCTGGCACTGGACGCGCGGGCGCGCCTTGTTGCCGGTCAAATCAT TGAACGTCTGGAGCCATGAC
Downstream 100 bases:
>100_bases CACCAGGACTCAGGCCAATTTCATACATTTCATGCAAAAACAATTAAATAAATTCAAAATTCGTGCGGTCTGCGCCATTG CCGCTGGTTTGTTTGCTGTC
Product: peptidase RseP
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MLTLLAFVVALGILIAVHEYGHYRVAVACGIKVLKFSIGFGKPIYTWRLKNKPTEFAIGMLPLGGYVKMLDEREAPVDPA ERHLAFNTQPLKSRAAVVAAGPAANLLLAVLIYAIVNWSGLQEPKAVLASPVAGSLAERAGLRGFETVQQAAFDGDELQA VRSFEDLRWRLTQGALDGRDLQLVLGNDSGSSSRTVTLELSKLDAAEADAQLFRKIGILGPWTRPVIGEVMAGGAAQKAG LRAGDVVLRMGSTAIVDGQQLREAIRGSARASRGDGAAIAPQDWQVQRAGQTLVLQVAPEIKRERGVAVARIGAYVGAPP EFVTVRYGPLDGLWQGVVRTWEVSQLTLKMMWKMVIGEASLKNLSGPLTIADYAGKSASLGWSAYLLFLALISVSLGVLN LLPLPVLDGGHLMYYLWEGITGRGVSDAWMDRLQRGGVAILLGMMCIALFNDLTRLLG
Sequences:
>Translated_458_residues MLTLLAFVVALGILIAVHEYGHYRVAVACGIKVLKFSIGFGKPIYTWRLKNKPTEFAIGMLPLGGYVKMLDEREAPVDPA ERHLAFNTQPLKSRAAVVAAGPAANLLLAVLIYAIVNWSGLQEPKAVLASPVAGSLAERAGLRGFETVQQAAFDGDELQA VRSFEDLRWRLTQGALDGRDLQLVLGNDSGSSSRTVTLELSKLDAAEADAQLFRKIGILGPWTRPVIGEVMAGGAAQKAG LRAGDVVLRMGSTAIVDGQQLREAIRGSARASRGDGAAIAPQDWQVQRAGQTLVLQVAPEIKRERGVAVARIGAYVGAPP EFVTVRYGPLDGLWQGVVRTWEVSQLTLKMMWKMVIGEASLKNLSGPLTIADYAGKSASLGWSAYLLFLALISVSLGVLN LLPLPVLDGGHLMYYLWEGITGRGVSDAWMDRLQRGGVAILLGMMCIALFNDLTRLLG >Mature_458_residues MLTLLAFVVALGILIAVHEYGHYRVAVACGIKVLKFSIGFGKPIYTWRLKNKPTEFAIGMLPLGGYVKMLDEREAPVDPA ERHLAFNTQPLKSRAAVVAAGPAANLLLAVLIYAIVNWSGLQEPKAVLASPVAGSLAERAGLRGFETVQQAAFDGDELQA VRSFEDLRWRLTQGALDGRDLQLVLGNDSGSSSRTVTLELSKLDAAEADAQLFRKIGILGPWTRPVIGEVMAGGAAQKAG LRAGDVVLRMGSTAIVDGQQLREAIRGSARASRGDGAAIAPQDWQVQRAGQTLVLQVAPEIKRERGVAVARIGAYVGAPP EFVTVRYGPLDGLWQGVVRTWEVSQLTLKMMWKMVIGEASLKNLSGPLTIADYAGKSASLGWSAYLLFLALISVSLGVLN LLPLPVLDGGHLMYYLWEGITGRGVSDAWMDRLQRGGVAILLGMMCIALFNDLTRLLG
Specific function: Unknown
COG id: COG0750
COG function: function code M; Predicted membrane-associated Zn-dependent proteases 1
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1786373, Length=471, Percent_Identity=39.7027600849257, Blast_Score=278, Evalue=5e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR004387 - InterPro: IPR008915 [H]
Pfam domain/function: PF02163 Peptidase_M50 [H]
EC number: NA
Molecular weight: Translated: 49150; Mature: 49150
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLLAFVVALGILIAVHEYGHYRVAVACGIKVLKFSIGFGKPIYTWRLKNKPTEFAIGM CHHHHHHHHHHHHHHHHHHCCCEEEEHHHCEEEEEEECCCCCCEEEEEECCCCCEEEEEE LPLGGYVKMLDEREAPVDPAERHLAFNTQPLKSRAAVVAAGPAANLLLAVLIYAIVNWSG ECCCHHHHHHHCCCCCCCHHHHHEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCC LQEPKAVLASPVAGSLAERAGLRGFETVQQAAFDGDELQAVRSFEDLRWRLTQGALDGRD CCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC LQLVLGNDSGSSSRTVTLELSKLDAAEADAQLFRKIGILGPWTRPVIGEVMAGGAAQKAG EEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHCC LRAGDVVLRMGSTAIVDGQQLREAIRGSARASRGDGAAIAPQDWQVQRAGQTLVLQVAPE CCCCCEEEEECCCEEECHHHHHHHHHCCCCCCCCCCCEECCCCCCHHHCCCEEEEEECHH IKRERGVAVARIGAYVGAPPEFVTVRYGPLDGLWQGVVRTWEVSQLTLKMMWKMVIGEAS HHHHCCCEEEEHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH LKNLSGPLTIADYAGKSASLGWSAYLLFLALISVSLGVLNLLPLPVLDGGHLMYYLWEGI HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECCC TGRGVSDAWMDRLQRGGVAILLGMMCIALFNDLTRLLG CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MLTLLAFVVALGILIAVHEYGHYRVAVACGIKVLKFSIGFGKPIYTWRLKNKPTEFAIGM CHHHHHHHHHHHHHHHHHHCCCEEEEHHHCEEEEEEECCCCCCEEEEEECCCCCEEEEEE LPLGGYVKMLDEREAPVDPAERHLAFNTQPLKSRAAVVAAGPAANLLLAVLIYAIVNWSG ECCCHHHHHHHCCCCCCCHHHHHEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCC LQEPKAVLASPVAGSLAERAGLRGFETVQQAAFDGDELQAVRSFEDLRWRLTQGALDGRD CCCCHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC LQLVLGNDSGSSSRTVTLELSKLDAAEADAQLFRKIGILGPWTRPVIGEVMAGGAAQKAG EEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHCC LRAGDVVLRMGSTAIVDGQQLREAIRGSARASRGDGAAIAPQDWQVQRAGQTLVLQVAPE CCCCCEEEEECCCEEECHHHHHHHHHCCCCCCCCCCCEECCCCCCHHHCCCEEEEEECHH IKRERGVAVARIGAYVGAPPEFVTVRYGPLDGLWQGVVRTWEVSQLTLKMMWKMVIGEAS HHHHCCCEEEEHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH LKNLSGPLTIADYAGKSASLGWSAYLLFLALISVSLGVLNLLPLPVLDGGHLMYYLWEGI HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECCC TGRGVSDAWMDRLQRGGVAILLGMMCIALFNDLTRLLG CCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]