| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yggU [C]
Identifier: 91788526
GI number: 91788526
Start: 2800125
End: 2800436
Strand: Direct
Name: yggU [C]
Synonym: Bpro_2664
Alternate gene names: 91788526
Gene position: 2800125-2800436 (Clockwise)
Preceding gene: 91788525
Following gene: 91788527
Centisome position: 53.85
GC content: 64.42
Gene sequence:
>312_bases ATGGCCGCACCGCGCAACGCCACCGGCGACTCGTTTTTTGCCTGGGACGGGGATGTGCTGGTGGTCAACATCCTGGGCAA GCCCGCCGCCAGCCGCGACGCCATTGGCAAGCCCAAAGGCACGCAGCTCAAAGTCAGCGTCACCGCCGCGCCGAAGAGTG GCAAGGCCACCGACCACATGGTGCGCTTCCTGGCGCCGCTGTTCGGCGTGGCGGTGGCCGACATCGAGGTGGTGTTTGGC CAGGAAAACGTCAACAAGCAACTGCGCATCAAGGCCCCCAAAAAGCTGCCTGAGGTGTTCACCGCCAAGTGA
Upstream 100 bases:
>100_bases GTTCGGCACGGCCCACCGGGCCCGCCTGTTCAACCGTGTCTGCGGCGGCGCCTTCGGCCTGCTGGGTGTCAGCCTGTTGC GTTTAAAAACCCCCAACTGA
Downstream 100 bases:
>100_bases AAACGCGGGAACCTTGCCCTCCGCCTGGATAGTTACCTGATTAATCAAGCTAATCAAGCGCTACCGACCACCCACAAAGG AGCCCACAGTTCATGGAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 103; Mature: 102
Protein sequence:
>103_residues MAAPRNATGDSFFAWDGDVLVVNILGKPAASRDAIGKPKGTQLKVSVTAAPKSGKATDHMVRFLAPLFGVAVADIEVVFG QENVNKQLRIKAPKKLPEVFTAK
Sequences:
>Translated_103_residues MAAPRNATGDSFFAWDGDVLVVNILGKPAASRDAIGKPKGTQLKVSVTAAPKSGKATDHMVRFLAPLFGVAVADIEVVFG QENVNKQLRIKAPKKLPEVFTAK >Mature_102_residues AAPRNATGDSFFAWDGDVLVVNILGKPAASRDAIGKPKGTQLKVSVTAAPKSGKATDHMVRFLAPLFGVAVADIEVVFGQ ENVNKQLRIKAPKKLPEVFTAK
Specific function: Unknown
COG id: COG1872
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0235 family [H]
Homologues:
Organism=Escherichia coli, GI87082189, Length=82, Percent_Identity=36.5853658536585, Blast_Score=59, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005228 - InterPro: IPR003746 [H]
Pfam domain/function: PF02594 DUF167 [H]
EC number: NA
Molecular weight: Translated: 10931; Mature: 10800
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPRNATGDSFFAWDGDVLVVNILGKPAASRDAIGKPKGTQLKVSVTAAPKSGKATDHM CCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH VRFLAPLFGVAVADIEVVFGQENVNKQLRIKAPKKLPEVFTAK HHHHHHHHHHHHHEEEEEECCCCCCCEEEEECCCCCCHHHCCC >Mature Secondary Structure AAPRNATGDSFFAWDGDVLVVNILGKPAASRDAIGKPKGTQLKVSVTAAPKSGKATDHM CCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH VRFLAPLFGVAVADIEVVFGQENVNKQLRIKAPKKLPEVFTAK HHHHHHHHHHHHHEEEEEECCCCCCCEEEEECCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA