BacMap

Definition	Polaromonas sp. JS666 chromosome, complete genome.
Accession	NC_007948
Length	5,200,264

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The map label for this gene is appF [H]

Identifier: 91788391

GI number: 91788391

Start: 2644037

End: 2645044

Strand: Reverse

Name: appF [H]

Synonym: Bpro_2528

Alternate gene names: 91788391

Gene position: 2645044-2644037 (Counterclockwise)

Preceding gene: 91788392

Following gene: 91788390

Centisome position: 50.86

GC content: 62.2

Gene sequence:

>1008_bases
ATGGAAAACTCAAGGGAATCCCTGCTGGAATTGCGCAATGTCAGCAAGCGCTTCGTCAAATCGCTCGATACCGCCGCCCG
CATTGCGAACCTGCTGGGTGCCAGCGCCAAAGAGGAAATCGTCCATGCCGTTGACGAGGTCGACCTCACCATTGAACGCG
GCGAAGTTGTTGGCCTGGTGGGCGAATCCGGTTGCGGAAAATCCACGCTGGGCCGGATGGCAGTTGGCTTGCATGGCCTG
TCGTCCGGGACGCGCCGCTGGAAAGGCGAGGACATCGACCGGCTGGAGCCGGCGCAGCGGCGCAAGAAGCAGCTCGGCAT
CCAGATGATCTTTCAGGATCCGTACGCGTCGCTGAACCCGCGCATGCGCGTGCTCGATATCGTCGGTGAGGCACCGGTCG
CACATAAGCTGATCACCGCAAGCGAGCAGTCCGGCTATGTGGAAGCGCTGCTGCAGCGGGTCGGCCTGGACCCTGCCGTC
CTGCGCCGCTTTCCACACCAGTTTTCAGGCGGCCAGCGGGCCCGCGTCGGCATTGCGCGGGCGTTGGCGGTGCAGCCGGA
ATTTCTGGTGTGCGATGAAGCCGTTGCGGCGCTCGATGTCTCCATCCAGGCGCAGGTGCTGAACCTGTTCATTCGCCTGC
GCGATGAATTGAACCTGACCTATCTGTTCATCAGCCACGACCTCGGCGTGGTCCGGCATCTTTCAGACCGCGTGGTTATC
ATGTACCTTGGCAGGGTGGTGGAGTCGGCGCCCGCCGATGCCGTGTTTGCCCACCCGAATCATCCCTACACGCAGGCGCT
GCTGGCATCGGCGCCGAAGCTGGAAGCGCGTAAAACAGAATTTTTCGCGGTCAAGGGCGAGATCCCGTCGCCCCTGAATC
CGCCGCCTGGCTGCCATTTCCACCCGCGCTGTCCGCATGCCATGCCGCGCTGCAGTGCTGAAAAGCCTGCCCTGAAAGAG
GTGGCACCGACACATTTTTCGGCCTGTCACCTGAACGATCAACACTGA

Upstream 100 bases:

>100_bases
CCTGCACCATTCAGCCGGCATTGGAGATTTTCGATGGCCGCGCCTTGCGCTGCTTTCATCCGGTCACCGAAGCGGTGGCC
ATACCGGTGGAGGCTGCCTG

Downstream 100 bases:

>100_bases
ACCTTTTTGAAGGCCATTCATCATGAGCACCCCATTCGATACGGCGAGCAACGAGAAACGGCCCTCGGCCGAACTGATGG
CCATGATCGAGCGCCTGATC

Product: oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MENSRESLLELRNVSKRFVKSLDTAARIANLLGASAKEEIVHAVDEVDLTIERGEVVGLVGESGCGKSTLGRMAVGLHGL
SSGTRRWKGEDIDRLEPAQRRKKQLGIQMIFQDPYASLNPRMRVLDIVGEAPVAHKLITASEQSGYVEALLQRVGLDPAV
LRRFPHQFSGGQRARVGIARALAVQPEFLVCDEAVAALDVSIQAQVLNLFIRLRDELNLTYLFISHDLGVVRHLSDRVVI
MYLGRVVESAPADAVFAHPNHPYTQALLASAPKLEARKTEFFAVKGEIPSPLNPPPGCHFHPRCPHAMPRCSAEKPALKE
VAPTHFSACHLNDQH

Sequences:

>Translated_335_residues
MENSRESLLELRNVSKRFVKSLDTAARIANLLGASAKEEIVHAVDEVDLTIERGEVVGLVGESGCGKSTLGRMAVGLHGL
SSGTRRWKGEDIDRLEPAQRRKKQLGIQMIFQDPYASLNPRMRVLDIVGEAPVAHKLITASEQSGYVEALLQRVGLDPAV
LRRFPHQFSGGQRARVGIARALAVQPEFLVCDEAVAALDVSIQAQVLNLFIRLRDELNLTYLFISHDLGVVRHLSDRVVI
MYLGRVVESAPADAVFAHPNHPYTQALLASAPKLEARKTEFFAVKGEIPSPLNPPPGCHFHPRCPHAMPRCSAEKPALKE
VAPTHFSACHLNDQH
>Mature_335_residues
MENSRESLLELRNVSKRFVKSLDTAARIANLLGASAKEEIVHAVDEVDLTIERGEVVGLVGESGCGKSTLGRMAVGLHGL
SSGTRRWKGEDIDRLEPAQRRKKQLGIQMIFQDPYASLNPRMRVLDIVGEAPVAHKLITASEQSGYVEALLQRVGLDPAV
LRRFPHQFSGGQRARVGIARALAVQPEFLVCDEAVAALDVSIQAQVLNLFIRLRDELNLTYLFISHDLGVVRHLSDRVVI
MYLGRVVESAPADAVFAHPNHPYTQALLASAPKLEARKTEFFAVKGEIPSPLNPPPGCHFHPRCPHAMPRCSAEKPALKE
VAPTHFSACHLNDQH

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG4608

COG function: function code E; ABC-type oligopeptide transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=263, Percent_Identity=29.6577946768061, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI148612844, Length=214, Percent_Identity=31.7757009345794, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI255708477, Length=214, Percent_Identity=31.7757009345794, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI156105685, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9961252, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI4505771, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI42741659, Length=238, Percent_Identity=27.3109243697479, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI42490749, Length=252, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789962, Length=303, Percent_Identity=43.8943894389439, Blast_Score=273, Evalue=8e-75,
Organism=Escherichia coli, GI1787500, Length=286, Percent_Identity=47.9020979020979, Blast_Score=273, Evalue=9e-75,
Organism=Escherichia coli, GI1787758, Length=311, Percent_Identity=42.7652733118971, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI145693107, Length=270, Percent_Identity=45.5555555555556, Blast_Score=224, Evalue=4e-60,
Organism=Escherichia coli, GI1789963, Length=295, Percent_Identity=40.3389830508475, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI48994883, Length=297, Percent_Identity=40.4040404040404, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1788506, Length=227, Percent_Identity=44.0528634361233, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1787548, Length=339, Percent_Identity=33.3333333333333, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1787759, Length=302, Percent_Identity=37.0860927152318, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=43.1192660550459, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=32.1969696969697, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787370, Length=266, Percent_Identity=31.9548872180451, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI48994997, Length=228, Percent_Identity=34.2105263157895, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI87081791, Length=269, Percent_Identity=32.3420074349442, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1786398, Length=235, Percent_Identity=33.1914893617021, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787712, Length=231, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788225, Length=250, Percent_Identity=34, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789032, Length=272, Percent_Identity=33.4558823529412, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788761, Length=252, Percent_Identity=30.5555555555556, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1789672, Length=234, Percent_Identity=34.1880341880342, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI87081709, Length=292, Percent_Identity=29.1095890410959, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789890, Length=240, Percent_Identity=32.0833333333333, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=35.2941176470588, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787029, Length=261, Percent_Identity=29.8850574712644, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1790467, Length=257, Percent_Identity=31.5175097276265, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786872, Length=212, Percent_Identity=33.4905660377358, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788450, Length=245, Percent_Identity=29.3877551020408, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788644, Length=167, Percent_Identity=33.5329341317365, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1786563, Length=213, Percent_Identity=32.8638497652582, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI87082267, Length=267, Percent_Identity=29.9625468164794, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786703, Length=207, Percent_Identity=33.8164251207729, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI48995001, Length=209, Percent_Identity=31.5789473684211, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=34.2723004694836, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790162, Length=238, Percent_Identity=27.7310924369748, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=31.1557788944724, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786698, Length=198, Percent_Identity=26.2626262626263, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI87081834, Length=243, Percent_Identity=30.0411522633745, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787164, Length=219, Percent_Identity=32.4200913242009, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788053, Length=193, Percent_Identity=32.6424870466321, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789586, Length=216, Percent_Identity=28.7037037037037, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789864, Length=232, Percent_Identity=28.448275862069, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787792, Length=218, Percent_Identity=29.8165137614679, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788897, Length=228, Percent_Identity=27.1929824561404, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786345, Length=213, Percent_Identity=30.9859154929577, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789991, Length=276, Percent_Identity=27.1739130434783, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788165, Length=222, Percent_Identity=28.3783783783784, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790544, Length=245, Percent_Identity=31.0204081632653, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994943, Length=208, Percent_Identity=29.3269230769231, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787143, Length=229, Percent_Identity=28.82096069869, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789593, Length=205, Percent_Identity=28.780487804878, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786981, Length=223, Percent_Identity=28.6995515695067, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790739, Length=288, Percent_Identity=25.3472222222222, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790534, Length=238, Percent_Identity=28.9915966386555, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787112, Length=267, Percent_Identity=26.2172284644195, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=226, Percent_Identity=29.646017699115, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI193208177, Length=289, Percent_Identity=26.2975778546713, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI25146777, Length=205, Percent_Identity=27.3170731707317, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=212, Percent_Identity=31.1320754716981, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=219, Percent_Identity=26.9406392694064, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=278, Percent_Identity=30.2158273381295, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=222, Percent_Identity=28.8288288288288, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=209, Percent_Identity=31.1004784688995, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=26.8518518518519, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=214, Percent_Identity=26.1682242990654, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=214, Percent_Identity=26.1682242990654, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=214, Percent_Identity=26.1682242990654, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17551700, Length=228, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17551702, Length=228, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=264, Percent_Identity=27.6515151515151, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=203, Percent_Identity=31.0344827586207, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=240, Percent_Identity=27.5, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115534520, Length=269, Percent_Identity=24.907063197026, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=222, Percent_Identity=25.2252252252252, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=228, Percent_Identity=26.7543859649123, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI85726357, Length=229, Percent_Identity=29.6943231441048, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24641565, Length=225, Percent_Identity=31.5555555555556, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI17136662, Length=230, Percent_Identity=28.695652173913, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24659289, Length=228, Percent_Identity=29.8245614035088, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI23397593, Length=216, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363262, Length=205, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24653245, Length=205, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 36835; Mature: 36835

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENSRESLLELRNVSKRFVKSLDTAARIANLLGASAKEEIVHAVDEVDLTIERGEVVGLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEECCCEEEEE
GESGCGKSTLGRMAVGLHGLSSGTRRWKGEDIDRLEPAQRRKKQLGIQMIFQDPYASLNP
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHCCEEEEEECCCCCCCC
RMRVLDIVGEAPVAHKLITASEQSGYVEALLQRVGLDPAVLRRFPHQFSGGQRARVGIAR
CEEEEEHHCCCCHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCHHCCCCCCHHHHHHH
ALAVQPEFLVCDEAVAALDVSIQAQVLNLFIRLRDELNLTYLFISHDLGVVRHLSDRVVI
HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCHHH
MYLGRVVESAPADAVFAHPNHPYTQALLASAPKLEARKTEFFAVKGEIPSPLNPPPGCHF
HHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
HPRCPHAMPRCSAEKPALKEVAPTHFSACHLNDQH
CCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCCC
>Mature Secondary Structure
MENSRESLLELRNVSKRFVKSLDTAARIANLLGASAKEEIVHAVDEVDLTIERGEVVGLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEECCCEEEEE
GESGCGKSTLGRMAVGLHGLSSGTRRWKGEDIDRLEPAQRRKKQLGIQMIFQDPYASLNP
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCHHHHHHHHCCEEEEEECCCCCCCC
RMRVLDIVGEAPVAHKLITASEQSGYVEALLQRVGLDPAVLRRFPHQFSGGQRARVGIAR
CEEEEEHHCCCCHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHCCHHCCCCCCHHHHHHH
ALAVQPEFLVCDEAVAALDVSIQAQVLNLFIRLRDELNLTYLFISHDLGVVRHLSDRVVI
HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCHHH
MYLGRVVESAPADAVFAHPNHPYTQALLASAPKLEARKTEFFAVKGEIPSPLNPPPGCHF
HHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
HPRCPHAMPRCSAEKPALKEVAPTHFSACHLNDQH
CCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]