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The map label for this gene is ycfH [C]

Identifier: 91788379

GI number: 91788379

Start: 2630929

End: 2631726

Strand: Reverse

Name: ycfH [C]

Synonym: Bpro_2516

Alternate gene names: 91788379

Gene position: 2631726-2630929 (Counterclockwise)

Preceding gene: 91788380

Following gene: 91788378

Centisome position: 50.61

GC content: 61.03

Gene sequence:

>798_bases
ATGTTCACAGATTCTCATTGCCACTTGAGCTTTCCGGAGCTACAGGCACAGTTGCCACAGATTCGCCAGGCCATGCGGGA
CGCCCAGGTCGACCGGGCGCTGTGCATTTGCACCACGCTGGAAGAGTTTGAAACCGTCCATGGGCTCGCCACCGGCTATG
ACAATTTCTGGGCCACCGTGGGCGTGCACCCCGACAACGAGGATGTGCGTGAACCCAGCCTTGATGACCTGCTGCAGCGT
GCGGCCCTGCCCAAGGTGGTGGGCATTGGTGAAACCGGCCTCGACTATTACCGGCTGGGGGACCGCACCGTGGCCGACAT
GGAATGGCAGCGCGAGCGTTTCCGGGTGCACATCCGGGCGGCGCGGCAGACCGGCAAACCGCTGGTCATTCATACCCGCA
GCGCCTCGGACGACACGATAGCCATCCTGAAAGAAGAGGGAGGCCAGGCCGGGCAGGCAGGGTGCGCCAAGGGCGTTTTT
CATTGCTTCACGGAAACCCGGGCGGTGGCGCGTGCGGCGCTTGATCTGGGGTTCTACATCTCGTTCTCCGGGATCCTGAC
CTTCAAGAATGCCGGCGATTTGCGCGAAGTTGCCGAGTTTGTTCCGCTGGACCGCCTGCTGATCGAGACCGACAGCCCCT
ACCTGGCGCCGGTGCCTTACCGGGGAAAAACAAACAATCCGTCTTATGTTCCGTTTGTGGCGCAGCAGATTGCCGAGCTG
AAGCAGCAGTCAGTACAGGCCATTGCCGAAGCCACCAGTCATAACTTCGAGCAACTCTTTACCGGGGTGGTTGCATGA

Upstream 100 bases:

>100_bases
GAAGCGAGCAGGGGTCTTTGCTGCCTGCTATATTTTTAATAGCTGCCTGCGCCGATTGTTTCGCGCTTCAGGTGGTTTTT
CCATAAACCGGTTTTTTTGA

Downstream 100 bases:

>100_bases
AAAAATACTTCATGAATTACATTAAAAAAACAATATACCTAATTGTTTTTATTGGATTTAATGTCGCATTTGCCGGATCG
TACGATGATTTTTTCGTTGC

Product: TatD-like protein deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MFTDSHCHLSFPELQAQLPQIRQAMRDAQVDRALCICTTLEEFETVHGLATGYDNFWATVGVHPDNEDVREPSLDDLLQR
AALPKVVGIGETGLDYYRLGDRTVADMEWQRERFRVHIRAARQTGKPLVIHTRSASDDTIAILKEEGGQAGQAGCAKGVF
HCFTETRAVARAALDLGFYISFSGILTFKNAGDLREVAEFVPLDRLLIETDSPYLAPVPYRGKTNNPSYVPFVAQQIAEL
KQQSVQAIAEATSHNFEQLFTGVVA

Sequences:

>Translated_265_residues
MFTDSHCHLSFPELQAQLPQIRQAMRDAQVDRALCICTTLEEFETVHGLATGYDNFWATVGVHPDNEDVREPSLDDLLQR
AALPKVVGIGETGLDYYRLGDRTVADMEWQRERFRVHIRAARQTGKPLVIHTRSASDDTIAILKEEGGQAGQAGCAKGVF
HCFTETRAVARAALDLGFYISFSGILTFKNAGDLREVAEFVPLDRLLIETDSPYLAPVPYRGKTNNPSYVPFVAQQIAEL
KQQSVQAIAEATSHNFEQLFTGVVA
>Mature_265_residues
MFTDSHCHLSFPELQAQLPQIRQAMRDAQVDRALCICTTLEEFETVHGLATGYDNFWATVGVHPDNEDVREPSLDDLLQR
AALPKVVGIGETGLDYYRLGDRTVADMEWQRERFRVHIRAARQTGKPLVIHTRSASDDTIAILKEEGGQAGQAGCAKGVF
HCFTETRAVARAALDLGFYISFSGILTFKNAGDLREVAEFVPLDRLLIETDSPYLAPVPYRGKTNNPSYVPFVAQQIAEL
KQQSVQAIAEATSHNFEQLFTGVVA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=29.8892988929889, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=30.2583025830258, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061853, Length=278, Percent_Identity=29.4964028776978, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI226061614, Length=260, Percent_Identity=28.8461538461538, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI225903424, Length=282, Percent_Identity=28.0141843971631, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=29.3617021276596, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI225903439, Length=166, Percent_Identity=33.1325301204819, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI14042943, Length=173, Percent_Identity=32.9479768786127, Blast_Score=81, Evalue=9e-16,
Organism=Escherichia coli, GI1787342, Length=266, Percent_Identity=45.4887218045113, Blast_Score=207, Evalue=4e-55,
Organism=Escherichia coli, GI48994985, Length=240, Percent_Identity=32.9166666666667, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI87082439, Length=266, Percent_Identity=29.3233082706767, Blast_Score=108, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17559024, Length=288, Percent_Identity=26.7361111111111, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=267, Percent_Identity=26.5917602996255, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17565396, Length=219, Percent_Identity=31.0502283105023, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17543026, Length=227, Percent_Identity=27.7533039647577, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648690, Length=292, Percent_Identity=29.1095890410959, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24586117, Length=249, Percent_Identity=30.1204819277108, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI221330018, Length=249, Percent_Identity=30.1204819277108, Blast_Score=78, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29411; Mature: 29411

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTDSHCHLSFPELQAQLPQIRQAMRDAQVDRALCICTTLEEFETVHGLATGYDNFWATV
CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
GVHPDNEDVREPSLDDLLQRAALPKVVGIGETGLDYYRLGDRTVADMEWQRERFRVHIRA
ECCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCHHEECCCCEEHHHHHHHHHHHHHHEE
ARQTGKPLVIHTRSASDDTIAILKEEGGQAGQAGCAKGVFHCFTETRAVARAALDLGFYI
HHHCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
SFSGILTFKNAGDLREVAEFVPLDRLLIETDSPYLAPVPYRGKTNNPSYVPFVAQQIAEL
EEEEEEEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHH
KQQSVQAIAEATSHNFEQLFTGVVA
HHHHHHHHHHHHCCCHHHHHHHHCC
>Mature Secondary Structure
MFTDSHCHLSFPELQAQLPQIRQAMRDAQVDRALCICTTLEEFETVHGLATGYDNFWATV
CCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
GVHPDNEDVREPSLDDLLQRAALPKVVGIGETGLDYYRLGDRTVADMEWQRERFRVHIRA
ECCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCHHEECCCCEEHHHHHHHHHHHHHHEE
ARQTGKPLVIHTRSASDDTIAILKEEGGQAGQAGCAKGVFHCFTETRAVARAALDLGFYI
HHHCCCEEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
SFSGILTFKNAGDLREVAEFVPLDRLLIETDSPYLAPVPYRGKTNNPSYVPFVAQQIAEL
EEEEEEEECCCCCHHHHHHHCCHHHEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHH
KQQSVQAIAEATSHNFEQLFTGVVA
HHHHHHHHHHHHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]