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The map label for this gene is smpB

Identifier: 91788301

GI number: 91788301

Start: 2540304

End: 2540753

Strand: Reverse

Name: smpB

Synonym: Bpro_2436

Alternate gene names: 91788301

Gene position: 2540753-2540304 (Counterclockwise)

Preceding gene: 91788304

Following gene: 91788299

Centisome position: 48.86

GC content: 58.67

Gene sequence:

>450_bases
GTGCGTATTGCCGACAACAAGAAAGCCATCTTCAACTACCACATCGAAGAGCGCTTTGAGGCCGGCATGGTGCTCGAAGG
CTGGGAGGTGAAATCTGTGCGCGAGGGAAAGGTGCAGCTCACCGATGGCTATGTGGTGATTCGCGGCGGCGAGCTCTTCA
TCATCGGCTGCCAGATCAACCCGCTGGGGACGGCATCCACCCATGTTCGCCCTGATTCAGTGCGAACCAAAAAACTGCTG
ATGCACAAGGACGAGATTCGCCGTTTGGTCGGCAAGGTCGAACAGAAAGGCTTCACCCTGGTACCGCTGAACATGCACTG
GAAAGCGGGCAAGGTGAAGTGCGAGATCGGCCTGGCCAAGGGCAAGGGCGAGCACGACAAGCGGGACACCATCAAGGACC
GCGAAGGCAAGCGCGAGGTGGAGCGCGCGATGAAGTCCAGAAGCCGATAG

Upstream 100 bases:

>100_bases
CATGGCCACCAAAGAAGCATCCCCCTCCAAAAAAACAGCCGCGGCGTCATCCTCCGGAAAAGCTGACACCAAAGCGTCTG
CCAAGGCAGCAGCGGCCGCA

Downstream 100 bases:

>100_bases
GCGATCAGCGCCGGGTCAAGTCCTGGTCAGGGAGCTGCTGTTTCCTGACAAGCTATTTGGTAGCAAATGGCAGGAAATTT
GGCAGCAAGCAGGAGCAACG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MRIADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQINPLGTASTHVRPDSVRTKKLL
MHKDEIRRLVGKVEQKGFTLVPLNMHWKAGKVKCEIGLAKGKGEHDKRDTIKDREGKREVERAMKSRSR

Sequences:

>Translated_149_residues
MRIADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQINPLGTASTHVRPDSVRTKKLL
MHKDEIRRLVGKVEQKGFTLVPLNMHWKAGKVKCEIGLAKGKGEHDKRDTIKDREGKREVERAMKSRSR
>Mature_149_residues
MRIADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQINPLGTASTHVRPDSVRTKKLL
MHKDEIRRLVGKVEQKGFTLVPLNMHWKAGKVKCEIGLAKGKGEHDKRDTIKDREGKREVERAMKSRSR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=147, Percent_Identity=49.6598639455782, Blast_Score=153, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_POLSJ (Q12AT7)

Other databases:

- EMBL:   CP000316
- RefSeq:   YP_549253.1
- ProteinModelPortal:   Q12AT7
- SMR:   Q12AT7
- STRING:   Q12AT7
- GeneID:   4014897
- GenomeReviews:   CP000316_GR
- KEGG:   pol:Bpro_2436
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q12AT7
- ProtClustDB:   PRK05422
- BioCyc:   PSP296591:BPRO_2436-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17040; Mature: 17040

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQIN
CCCCCCCCEEEEEEHHHHCCCCEEEECCCCCCCCCCEEEEECCEEEEECCEEEEEEEEEC
PLGTASTHVRPDSVRTKKLLMHKDEIRRLVGKVEQKGFTLVPLNMHWKAGKVKCEIGLAK
CCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECC
GKGEHDKRDTIKDREGKREVERAMKSRSR
CCCCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRIADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQIN
CCCCCCCCEEEEEEHHHHCCCCEEEECCCCCCCCCCEEEEECCEEEEECCEEEEEEEEEC
PLGTASTHVRPDSVRTKKLLMHKDEIRRLVGKVEQKGFTLVPLNMHWKAGKVKCEIGLAK
CCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECC
GKGEHDKRDTIKDREGKREVERAMKSRSR
CCCCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA