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The map label for this gene is rbfA [H]

Identifier: 91788292

GI number: 91788292

Start: 2529847

End: 2530215

Strand: Direct

Name: rbfA [H]

Synonym: Bpro_2427

Alternate gene names: 91788292

Gene position: 2529847-2530215 (Clockwise)

Preceding gene: 91788291

Following gene: 91788293

Centisome position: 48.65

GC content: 57.72

Gene sequence:

>369_bases
ATGCGTAAAAAATCATCCACCCCCAACCGCGGCTTTCGCGTTGCCGATCAGATCCAGCGGGATCTGACGGAGCTGATCGC
GCGCGAGCTGAAAGACCCGCGGGTCGGGATGGTGACCATTCAGGCGGTTGAAGTTACGCCCGACTATGCGCACGCCAAGG
TGTTTTTCAGTGTACTGGTTGGTGACCCCAAAGCGTGCGAAGAAGCGCTCAATCAAGCCGCTGGTTTTTTGCGCAACGGC
CTGTTCAAGCGCCTGATGACGCACACGGTGCCCACCCTGCATTTCCACTTTGACCGTACCACCGAACGTGCGGCAGACAT
GAACGCCTTGATTGCCAAGGCGGTTTCTTCCCGCGCAAAAGACGACTGA

Upstream 100 bases:

>100_bases
GAAGTGGCTCGTACCTTGTAAGCAAAATACTGGCAGTCGACCGGCCCTTCGGGGCTGGCTGCCGTCCTGATTGATCATTA
CAAGCCCAGACCTTTGTTCC

Downstream 100 bases:

>100_bases
GTTCGCGCCGTTCCCCTTGACAGGTTCGGGGACAACGGTGCCAACGGAGCACGCGGGCGAGTCCCGTTCGCTGAGCCTGT
CGAAACTTTATGACGCAAAC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MRKKSSTPNRGFRVADQIQRDLTELIARELKDPRVGMVTIQAVEVTPDYAHAKVFFSVLVGDPKACEEALNQAAGFLRNG
LFKRLMTHTVPTLHFHFDRTTERAADMNALIAKAVSSRAKDD

Sequences:

>Translated_122_residues
MRKKSSTPNRGFRVADQIQRDLTELIARELKDPRVGMVTIQAVEVTPDYAHAKVFFSVLVGDPKACEEALNQAAGFLRNG
LFKRLMTHTVPTLHFHFDRTTERAADMNALIAKAVSSRAKDD
>Mature_122_residues
MRKKSSTPNRGFRVADQIQRDLTELIARELKDPRVGMVTIQAVEVTPDYAHAKVFFSVLVGDPKACEEALNQAAGFLRNG
LFKRLMTHTVPTLHFHFDRTTERAADMNALIAKAVSSRAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=108, Percent_Identity=36.1111111111111, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13669; Mature: 13669

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKSSTPNRGFRVADQIQRDLTELIARELKDPRVGMVTIQAVEVTPDYAHAKVFFSVLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
GDPKACEEALNQAAGFLRNGLFKRLMTHTVPTLHFHFDRTTERAADMNALIAKAVSSRAK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHHHHHHCCC
DD
CC
>Mature Secondary Structure
MRKKSSTPNRGFRVADQIQRDLTELIARELKDPRVGMVTIQAVEVTPDYAHAKVFFSVLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
GDPKACEEALNQAAGFLRNGLFKRLMTHTVPTLHFHFDRTTERAADMNALIAKAVSSRAK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCHHHHHHHHHHHHHHHHHHCCC
DD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA