Click here to switch to the map view.

The map label for this gene is lptF [H]

Identifier: 91788272

GI number: 91788272

Start: 2505302

End: 2506432

Strand: Reverse

Name: lptF [H]

Synonym: Bpro_2407

Alternate gene names: 91788272

Gene position: 2506432-2505302 (Counterclockwise)

Preceding gene: 91788277

Following gene: 91788271

Centisome position: 48.2

GC content: 60.04

Gene sequence:

>1131_bases
ATGTTATTCCAATCTTCGATTCGCAAAGAGTTAGCCCGCAGCTTTGGCGCAACGCTAGTCGTGCTGGTCACCATCGTGAT
GACCATCGTGCTGATCCGCACCCTCGGCCAGGCCTCGCGCGGCTCCATCAGTCCCCAGGATGTGATGCTCTTCATGGCCT
ACTCGGCCCTGGGCCGCCTGCCGACCATCCTGACGCTGTCGCTCTTCATTGCCATGGTCAGTACCTTGTCACGCATGTAC
CGCGACAGTGAAATGGTGGTCTGGTTCACCAGCGGCCAGGGCCTGGGAGGCTTCCTCAAGCCGCTCTTTCGCTTTGCCTG
GCCGGTTCTGCTGGTCATTGCGCTGATGGCGCTTTTTGTCTGGCCATGGGCCAACCAGCAGACCAAGGACATGCAAAACC
GCTACGCCCAGCGCGGCGACCTGAACCGGGTCGCCCCGGGCCAGTTCCAGGAGTCATCCAGCGGTAACCGGGTATTTTTC
ATTGATCGGGATTTAGCAAGCGAGCAAAGCAGCAGCAACGTTTTTATTGCTGCGACCGAAAAAGGAAAAAGCTCCGTCAC
CACGGCACGTTCCGGCCGTATCGAGACCCGGGGCGACGCCCAGTTCCTGATGCTCGAAAAAGGCCAGCGGCTTGAAAACG
TGGTGGGGCAGGCGGCCCTGAAGATCAGCGATTTTGAAGAGTACGGCACCCGGACGGGCGACTCCGCCTACCTTGGCGAA
CGCACACCCGAAGCCAAGCTCCTGTCCACACGCTCGCTGATCAAGGAGCCTACGCGCAGCAACCTGGGTGAGCTGGCATG
GCGATTAGGTCTGGCCATGGCCGCAGTCAATTTCGTGATTTTGGCGGTCGCACTGGCAAGCGTGAACCCGCGCGGCGGGC
GCAGCGGCAACATGATTTTTGTGCTGCTGACGTTTGTCGTCTACAACAACCTGGTGAATCTGGGGCAAAGCTGGATTTTT
GTGGGCCTGATCAGTTTCACCAACTTCCTGGTGGTGCTGCATGGCGGTGTGCTGCTGCTGGGGCTGCTGTGGCTGTCCAA
ACGGCATTTCAATTGGGTGCTCCGGCCGGCCCGGCGCGTCGTGCGCCGCCCCTTGGGCGTGCGCGACACTGACTTTGGAA
GCAGCTCATGA

Upstream 100 bases:

>100_bases
GCAAATACGGGCGAGGGGAAGCAGTTTGAGTTCAAAGTCCATAATTCAGGGTTGAGCAAATAAAACAACAATAAAGCATA
GCTACGGCAATTAGTCAGTC

Downstream 100 bases:

>100_bases
GGACCATACGCCGGCTGATTTATGGGGAAGTGCTCACCGCCATTGCGCTGGTTGCGCTCGGGTTTCTGGCCCTGTTTTTC
TTTTTTGACCTCGTCGATGA

Product: permease YjgP/YjgQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MLFQSSIRKELARSFGATLVVLVTIVMTIVLIRTLGQASRGSISPQDVMLFMAYSALGRLPTILTLSLFIAMVSTLSRMY
RDSEMVVWFTSGQGLGGFLKPLFRFAWPVLLVIALMALFVWPWANQQTKDMQNRYAQRGDLNRVAPGQFQESSSGNRVFF
IDRDLASEQSSSNVFIAATEKGKSSVTTARSGRIETRGDAQFLMLEKGQRLENVVGQAALKISDFEEYGTRTGDSAYLGE
RTPEAKLLSTRSLIKEPTRSNLGELAWRLGLAMAAVNFVILAVALASVNPRGGRSGNMIFVLLTFVVYNNLVNLGQSWIF
VGLISFTNFLVVLHGGVLLLGLLWLSKRHFNWVLRPARRVVRRPLGVRDTDFGSSS

Sequences:

>Translated_376_residues
MLFQSSIRKELARSFGATLVVLVTIVMTIVLIRTLGQASRGSISPQDVMLFMAYSALGRLPTILTLSLFIAMVSTLSRMY
RDSEMVVWFTSGQGLGGFLKPLFRFAWPVLLVIALMALFVWPWANQQTKDMQNRYAQRGDLNRVAPGQFQESSSGNRVFF
IDRDLASEQSSSNVFIAATEKGKSSVTTARSGRIETRGDAQFLMLEKGQRLENVVGQAALKISDFEEYGTRTGDSAYLGE
RTPEAKLLSTRSLIKEPTRSNLGELAWRLGLAMAAVNFVILAVALASVNPRGGRSGNMIFVLLTFVVYNNLVNLGQSWIF
VGLISFTNFLVVLHGGVLLLGLLWLSKRHFNWVLRPARRVVRRPLGVRDTDFGSSS
>Mature_376_residues
MLFQSSIRKELARSFGATLVVLVTIVMTIVLIRTLGQASRGSISPQDVMLFMAYSALGRLPTILTLSLFIAMVSTLSRMY
RDSEMVVWFTSGQGLGGFLKPLFRFAWPVLLVIALMALFVWPWANQQTKDMQNRYAQRGDLNRVAPGQFQESSSGNRVFF
IDRDLASEQSSSNVFIAATEKGKSSVTTARSGRIETRGDAQFLMLEKGQRLENVVGQAALKISDFEEYGTRTGDSAYLGE
RTPEAKLLSTRSLIKEPTRSNLGELAWRLGLAMAAVNFVILAVALASVNPRGGRSGNMIFVLLTFVVYNNLVNLGQSWIF
VGLISFTNFLVVLHGGVLLLGLLWLSKRHFNWVLRPARRVVRRPLGVRDTDFGSSS

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=282, Percent_Identity=26.5957446808511, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 41686; Mature: 41686

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFQSSIRKELARSFGATLVVLVTIVMTIVLIRTLGQASRGSISPQDVMLFMAYSALGRL
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
PTILTLSLFIAMVSTLSRMYRDSEMVVWFTSGQGLGGFLKPLFRFAWPVLLVIALMALFV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WPWANQQTKDMQNRYAQRGDLNRVAPGQFQESSSGNRVFFIDRDLASEQSSSNVFIAATE
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEC
KGKSSVTTARSGRIETRGDAQFLMLEKGQRLENVVGQAALKISDFEEYGTRTGDSAYLGE
CCCCHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RTPEAKLLSTRSLIKEPTRSNLGELAWRLGLAMAAVNFVILAVALASVNPRGGRSGNMIF
CCCHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
VLLTFVVYNNLVNLGQSWIFVGLISFTNFLVVLHGGVLLLGLLWLSKRHFNWVLRPARRV
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRRPLGVRDTDFGSSS
HHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLFQSSIRKELARSFGATLVVLVTIVMTIVLIRTLGQASRGSISPQDVMLFMAYSALGRL
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
PTILTLSLFIAMVSTLSRMYRDSEMVVWFTSGQGLGGFLKPLFRFAWPVLLVIALMALFV
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WPWANQQTKDMQNRYAQRGDLNRVAPGQFQESSSGNRVFFIDRDLASEQSSSNVFIAATE
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEC
KGKSSVTTARSGRIETRGDAQFLMLEKGQRLENVVGQAALKISDFEEYGTRTGDSAYLGE
CCCCHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RTPEAKLLSTRSLIKEPTRSNLGELAWRLGLAMAAVNFVILAVALASVNPRGGRSGNMIF
CCCHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
VLLTFVVYNNLVNLGQSWIFVGLISFTNFLVVLHGGVLLLGLLWLSKRHFNWVLRPARRV
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRRPLGVRDTDFGSSS
HHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]