| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is mrcA [H]
Identifier: 91788198
GI number: 91788198
Start: 2425378
End: 2427783
Strand: Reverse
Name: mrcA [H]
Synonym: Bpro_2329
Alternate gene names: 91788198
Gene position: 2427783-2425378 (Counterclockwise)
Preceding gene: 91788199
Following gene: 91788197
Centisome position: 46.69
GC content: 62.51
Gene sequence:
>2406_bases ATGAAAAAACTCCTTGCCTGCGTCCAACCTTTCGCCACCGAAGCTCTTCACCACCTGCGCCACCCTACCCGGCGCGCAGT GGCCTTGTCGTTGGCTGCACTGCCGGTGCTGTTGCTGCTGTATGCGCTGATCCTGATTCCTTTCACCCCGAGCATCAAAG ACGTCAGGAAAGCCAAATCGCAGCAGCCTGCGGTGGTTATGTCCGTCGACGGCAAGGAACTGGCCCTGTTCAAGCGCGCC AATCGCGACTGGGTCAAGCTCGCCGACATTTCACCCAACGTAGTTGCGGCACTGATTGCAACCGAGGACCACCGTTTTTA TGAGCACCACGGGGTGGACCTCAGGCGAACGGCTTCCTCGGTTTTTCATACATTTACCGGCGATCTGCAGGGCGGCTCGA CCATCACGCAGCAGCTCGCGCGTAACCTGTACCCCGAGGAGGTGGGCCGCGCGCGGAGTTTGACGCGCAAGTTCAAGGAA ATCATCACGGCACTAAAAATCGAGGCTGTGTACACCAAGCAGGAGATCCTGGAGACCTACCTGAACACGGTGCCATTCCT TTACAACGCCTACGGCATTGAAATGGCTGCGCGCACCTACTTCGACAAGTCGGCTGAAGCGCTGGATGTACTGGAAAGCG CCACGCTGATCGGCATGTTGAAGGGCACCAGCTACTACAACCCGGTGTTGAACCCGGAACGTGCCGTGCAGCGACGCAAC ATCGTTCTTGGCCAGATGACCAAACACCAGAAGCTGGACGAAAAAAAGCTGGAGGGGCTGAAGAAAAGGCCGCTGAAGAT CGATTTCGAGCGGCAGACCGAGCCGGTGGGCATGGCGCCCCATGTTGCCCAGCACCTGCGCAAATGGCTGATCGAATGGG CCGATCGCAACGACTACAACATTTACGCCGATGGCCTGGTGGTACGCACCACCATCGACTCGCGGCTGCAGAAGCTGGCC AGCCAGGCCGTGGCACGCCAAGCCGACAGCCTGCAGGCCTCGGCCAACGCCGAGTGGGGGCCTCGGGCATGGGGTACCAA AAAAGAGCTGGTACGCGCCCTCGTGCGGGACACGCGCGACTACAAAGCTGCACGTGAATCAGGCCAAAGCGACGAGCAGG CGCTCAAACAGGTGCAGGCCGATGCGGCCACGATGCGGGCATTGCGCGAAGACAAGACCCGCCTGCAGGCCGGCCTTGTG GCCATGGACCCCAGAAACGGGCATGTGATGGCCTGGGTCGGCAGCCGTGACTTTGCACAGGACCAGTTCGACCATGTGCA ACAGGCGCGCAGGCAGCCCGGCTCCACCTTCAAGCCTTTTGTTTACGCTGCGGCCTTCGAGCAGGGCGCGCTGGCGACCG ATGGTTTTGTGGATCAGGCGGTGGAGATCCCGCTGGGCGGCGGCGCCGTCTGGCGGCCCACCGACGCCGGTGCACCCAGC GGATTGACGATGACCCTGCGCGACGGGCTGGTGTATTCCAAGAACACCATCACGGCCCAGGTCATGCAGACGGTAGGGCC CGCGAAGGTAGCCAAACTGGCCCATGCCATGGGCGTACGCCAAAGCAGGCTGGAGCAAGTGCCTTCGCTCGCATTGGGAA GCAGCCCTGTCACCTTGAAGGAAATGGTCTCGGCCTACAGCACCATCGCCAACAACGGCAACTACATTGAGCCGATTCTG GTCACCGCTGTTGAAGACCGCCATGGGAAGGTGCTTGAAGCGTTTCAGGCCCAACCGCAGGAGCAGGCCATGTCGCTGGC CCATGCGCAAACGCTGGTCGATGTGATGCGTGGCGTCATTGACAAGGGCACAGGTGCCGCCATCCGGAGTCGATTCGGCA TTCAGGCCGACGTGGCAGGCAAGACAGGCACGACCCAGGACAACACCGATGGCTGGTTCATCCTGATGCACCCGCAGCTG GTGGCTGGGGCCTGGGTCGGCTTCAACGATAACCGGGTGACAATGGGCGACTACTGGGGACCAGGCGCACGCAGCGCACT ACCCATCGTCGGCGACTTCTTTGCGCTGTCGCTACGCAGCCGGGTGATTGACCAGCAGGCACGATTTTCCGCGCCGCAAA CTGGTGGCATGGCAAGTCAGGTCAATGACTGGTTCAGCGGCCTGTTCCCCGCCAGCCCGGCGCCGCAACCAGCACCCGTC CCCGACGCCGAGGTCATTTTGGCACCCGAACCAGCCCCGCCGCCAACGCCGCCCACACCGTCTCCACCCGCTGCGCCGTC AGTCCTTGTATTGCCGAACGCGCCTTCGCAAGCAGGGCCGCCGCCCGGCGCCACGGATCCGCGGTTCGTGTTCATCCCCT CCCGACCGGTCGCCCCGCCCGATCGCGGCGGAGTCCCTATCCTGCGTGAATCCACGGTACCGGAAAACGCCGGCACCGGG CAGTAA
Upstream 100 bases:
>100_bases GCACGGGATATCGGATATTGGCCGTTCCGGAAAGCATGTCAGCCCGCTTCCATTGCCCTCCTGCAGCCGCAGAACTCGCT CCACCCTACACTGGGGGTTG
Downstream 100 bases:
>100_bases GCTCTCAATCCCCTGGCAGGTACGTGGGTCAGCGCTGCCTACGCTGCCTACAATCGACCGGCACAGACGTCAGGCTCCAG CCCGTACTGAACTGGCACAC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MKKLLACVQPFATEALHHLRHPTRRAVALSLAALPVLLLLYALILIPFTPSIKDVRKAKSQQPAVVMSVDGKELALFKRA NRDWVKLADISPNVVAALIATEDHRFYEHHGVDLRRTASSVFHTFTGDLQGGSTITQQLARNLYPEEVGRARSLTRKFKE IITALKIEAVYTKQEILETYLNTVPFLYNAYGIEMAARTYFDKSAEALDVLESATLIGMLKGTSYYNPVLNPERAVQRRN IVLGQMTKHQKLDEKKLEGLKKRPLKIDFERQTEPVGMAPHVAQHLRKWLIEWADRNDYNIYADGLVVRTTIDSRLQKLA SQAVARQADSLQASANAEWGPRAWGTKKELVRALVRDTRDYKAARESGQSDEQALKQVQADAATMRALREDKTRLQAGLV AMDPRNGHVMAWVGSRDFAQDQFDHVQQARRQPGSTFKPFVYAAAFEQGALATDGFVDQAVEIPLGGGAVWRPTDAGAPS GLTMTLRDGLVYSKNTITAQVMQTVGPAKVAKLAHAMGVRQSRLEQVPSLALGSSPVTLKEMVSAYSTIANNGNYIEPIL VTAVEDRHGKVLEAFQAQPQEQAMSLAHAQTLVDVMRGVIDKGTGAAIRSRFGIQADVAGKTGTTQDNTDGWFILMHPQL VAGAWVGFNDNRVTMGDYWGPGARSALPIVGDFFALSLRSRVIDQQARFSAPQTGGMASQVNDWFSGLFPASPAPQPAPV PDAEVILAPEPAPPPTPPTPSPPAAPSVLVLPNAPSQAGPPPGATDPRFVFIPSRPVAPPDRGGVPILRESTVPENAGTG Q
Sequences:
>Translated_801_residues MKKLLACVQPFATEALHHLRHPTRRAVALSLAALPVLLLLYALILIPFTPSIKDVRKAKSQQPAVVMSVDGKELALFKRA NRDWVKLADISPNVVAALIATEDHRFYEHHGVDLRRTASSVFHTFTGDLQGGSTITQQLARNLYPEEVGRARSLTRKFKE IITALKIEAVYTKQEILETYLNTVPFLYNAYGIEMAARTYFDKSAEALDVLESATLIGMLKGTSYYNPVLNPERAVQRRN IVLGQMTKHQKLDEKKLEGLKKRPLKIDFERQTEPVGMAPHVAQHLRKWLIEWADRNDYNIYADGLVVRTTIDSRLQKLA SQAVARQADSLQASANAEWGPRAWGTKKELVRALVRDTRDYKAARESGQSDEQALKQVQADAATMRALREDKTRLQAGLV AMDPRNGHVMAWVGSRDFAQDQFDHVQQARRQPGSTFKPFVYAAAFEQGALATDGFVDQAVEIPLGGGAVWRPTDAGAPS GLTMTLRDGLVYSKNTITAQVMQTVGPAKVAKLAHAMGVRQSRLEQVPSLALGSSPVTLKEMVSAYSTIANNGNYIEPIL VTAVEDRHGKVLEAFQAQPQEQAMSLAHAQTLVDVMRGVIDKGTGAAIRSRFGIQADVAGKTGTTQDNTDGWFILMHPQL VAGAWVGFNDNRVTMGDYWGPGARSALPIVGDFFALSLRSRVIDQQARFSAPQTGGMASQVNDWFSGLFPASPAPQPAPV PDAEVILAPEPAPPPTPPTPSPPAAPSVLVLPNAPSQAGPPPGATDPRFVFIPSRPVAPPDRGGVPILRESTVPENAGTG Q >Mature_801_residues MKKLLACVQPFATEALHHLRHPTRRAVALSLAALPVLLLLYALILIPFTPSIKDVRKAKSQQPAVVMSVDGKELALFKRA NRDWVKLADISPNVVAALIATEDHRFYEHHGVDLRRTASSVFHTFTGDLQGGSTITQQLARNLYPEEVGRARSLTRKFKE IITALKIEAVYTKQEILETYLNTVPFLYNAYGIEMAARTYFDKSAEALDVLESATLIGMLKGTSYYNPVLNPERAVQRRN IVLGQMTKHQKLDEKKLEGLKKRPLKIDFERQTEPVGMAPHVAQHLRKWLIEWADRNDYNIYADGLVVRTTIDSRLQKLA SQAVARQADSLQASANAEWGPRAWGTKKELVRALVRDTRDYKAARESGQSDEQALKQVQADAATMRALREDKTRLQAGLV AMDPRNGHVMAWVGSRDFAQDQFDHVQQARRQPGSTFKPFVYAAAFEQGALATDGFVDQAVEIPLGGGAVWRPTDAGAPS GLTMTLRDGLVYSKNTITAQVMQTVGPAKVAKLAHAMGVRQSRLEQVPSLALGSSPVTLKEMVSAYSTIANNGNYIEPIL VTAVEDRHGKVLEAFQAQPQEQAMSLAHAQTLVDVMRGVIDKGTGAAIRSRFGIQADVAGKTGTTQDNTDGWFILMHPQL VAGAWVGFNDNRVTMGDYWGPGARSALPIVGDFFALSLRSRVIDQQARFSAPQTGGMASQVNDWFSGLFPASPAPQPAPV PDAEVILAPEPAPPPTPPTPSPPAAPSVLVLPNAPSQAGPPPGATDPRFVFIPSRPVAPPDRGGVPILRESTVPENAGTG Q
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=623, Percent_Identity=31.4606741573034, Blast_Score=262, Evalue=8e-71, Organism=Escherichia coli, GI1788867, Length=675, Percent_Identity=25.4814814814815, Blast_Score=138, Evalue=2e-33, Organism=Escherichia coli, GI1786343, Length=236, Percent_Identity=35.5932203389831, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI1789601, Length=143, Percent_Identity=39.1608391608392, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 87317; Mature: 87317
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLACVQPFATEALHHLRHPTRRAVALSLAALPVLLLLYALILIPFTPSIKDVRKAKS CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC QQPAVVMSVDGKELALFKRANRDWVKLADISPNVVAALIATEDHRFYEHHGVDLRRTASS CCCEEEEEECCCEEEHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHCCCCHHHHHHH VFHTFTGDLQGGSTITQQLARNLYPEEVGRARSLTRKFKEIITALKIEAVYTKQEILETY HHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNTVPFLYNAYGIEMAARTYFDKSAEALDVLESATLIGMLKGTSYYNPVLNPERAVQRRN HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH IVLGQMTKHQKLDEKKLEGLKKRPLKIDFERQTEPVGMAPHVAQHLRKWLIEWADRNDYN HHHHCCHHHHHCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE IYADGLVVRTTIDSRLQKLASQAVARQADSLQASANAEWGPRAWGTKKELVRALVRDTRD EEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH YKAARESGQSDEQALKQVQADAATMRALREDKTRLQAGLVAMDPRNGHVMAWVGSRDFAQ HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEEEEECCCCHHH DQFDHVQQARRQPGSTFKPFVYAAAFEQGALATDGFVDQAVEIPLGGGAVWRPTDAGAPS HHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHEEECCCCCCEECCCCCCCCC GLTMTLRDGLVYSKNTITAQVMQTVGPAKVAKLAHAMGVRQSRLEQVPSLALGSSPVTLK CCEEEEECCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHH EMVSAYSTIANNGNYIEPILVTAVEDRHGKVLEAFQAQPQEQAMSLAHAQTLVDVMRGVI HHHHHHHHHHCCCCEECEEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH DKGTGAAIRSRFGIQADVAGKTGTTQDNTDGWFILMHPQLVAGAWVGFNDNRVTMGDYWG CCCCCHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHEEECCCCCEEEECCCCC PGARSALPIVGDFFALSLRSRVIDQQARFSAPQTGGMASQVNDWFSGLFPASPAPQPAPV CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC PDAEVILAPEPAPPPTPPTPSPPAAPSVLVLPNAPSQAGPPPGATDPRFVFIPSRPVAPP CCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC DRGGVPILRESTVPENAGTGQ CCCCCCEEECCCCCCCCCCCC >Mature Secondary Structure MKKLLACVQPFATEALHHLRHPTRRAVALSLAALPVLLLLYALILIPFTPSIKDVRKAKS CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC QQPAVVMSVDGKELALFKRANRDWVKLADISPNVVAALIATEDHRFYEHHGVDLRRTASS CCCEEEEEECCCEEEHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHCCCCHHHHHHH VFHTFTGDLQGGSTITQQLARNLYPEEVGRARSLTRKFKEIITALKIEAVYTKQEILETY HHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNTVPFLYNAYGIEMAARTYFDKSAEALDVLESATLIGMLKGTSYYNPVLNPERAVQRRN HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH IVLGQMTKHQKLDEKKLEGLKKRPLKIDFERQTEPVGMAPHVAQHLRKWLIEWADRNDYN HHHHCCHHHHHCCHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE IYADGLVVRTTIDSRLQKLASQAVARQADSLQASANAEWGPRAWGTKKELVRALVRDTRD EEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH YKAARESGQSDEQALKQVQADAATMRALREDKTRLQAGLVAMDPRNGHVMAWVGSRDFAQ HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCEEEEEECCCCHHH DQFDHVQQARRQPGSTFKPFVYAAAFEQGALATDGFVDQAVEIPLGGGAVWRPTDAGAPS HHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHHEEECCCCCCEECCCCCCCCC GLTMTLRDGLVYSKNTITAQVMQTVGPAKVAKLAHAMGVRQSRLEQVPSLALGSSPVTLK CCEEEEECCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHH EMVSAYSTIANNGNYIEPILVTAVEDRHGKVLEAFQAQPQEQAMSLAHAQTLVDVMRGVI HHHHHHHHHHCCCCEECEEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH DKGTGAAIRSRFGIQADVAGKTGTTQDNTDGWFILMHPQLVAGAWVGFNDNRVTMGDYWG CCCCCHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCHHHHHEEECCCCCEEEECCCCC PGARSALPIVGDFFALSLRSRVIDQQARFSAPQTGGMASQVNDWFSGLFPASPAPQPAPV CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC PDAEVILAPEPAPPPTPPTPSPPAAPSVLVLPNAPSQAGPPPGATDPRFVFIPSRPVAPP CCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC DRGGVPILRESTVPENAGTGQ CCCCCCEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA