| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ilvD1 [H]
Identifier: 91788166
GI number: 91788166
Start: 2389233
End: 2390972
Strand: Reverse
Name: ilvD1 [H]
Synonym: Bpro_2297
Alternate gene names: 91788166
Gene position: 2390972-2389233 (Counterclockwise)
Preceding gene: 91788167
Following gene: 91788165
Centisome position: 45.98
GC content: 64.66
Gene sequence:
>1740_bases ATGAGCAAAAAAACCTACGAATCGCTGCGCAGCGCGCGCTGGTTCGCCCCCGACGATGTGCGCTCTTTTGGCCACCGCTC GCGCGTGATGCAGCTGGGCTATGGCCCCGAAGACTGGGTCGGCAAGCCGGTGATCGCCATTGTGAACACCTGGAGCGACA TCGGCACCTGCCACGGCCACTTCAAGCAGCGCGTGGAAGACGTCAAGCGCGGCGTGCTGCAGGCCGGCGGTTTCCCGATT GAACTTCCGGCCATCTCGCTGTCGGAATCCATCGTCAAGCCCACCACCATGCTCTACCGCAACATGCTGGCCATGGAAAC CGAAGAGCTGCTGCGCAGCCACCCGATCGACGGCGTGGTGTTGATGGGTGGCTGCGACAAGACCACGCCCGGCCTGCTGA TGGGTGCGATGAGCGCGGGCATGCCCTGCATCTACCTGCCGGCTGGCCCCATGCTGAGCGGCAACGTCAAGGGCAAGGTG CTGGGCTCGGGTTCAGACACCTGGAAATACTGGGACGACCGGCGCGCCGGCAAGATCAGCGCGGCCCAATGGCTGGAAGT CGAAGGCGGCATTGCCCGCAGCCACGGCCACTGCATGACCATGGGCACGGCCAGCACCATGACGGGCATTGCCGAGGCCT GCGGATTCACGCTGCCGGGTGCATCGTCCATTCCCGCAGTGGACGCCAACCACATCCGCATGGCCAGCGAATGTGGCCGC CGCGTGGTCAGCATGGTCTGGGAAGACCTGACTCCGGCCAAAATGCTCAGCCGCGCCTCGTTTGAAAACGCCATCGTGAT CGCCATGGCCATGGGTTGCTCGACCAACGCCATCATTCACCTGGTGGCCATGTCGCGCCGCGCCGGCGAGCACTGCGCCG TGGGTCTGGACGACTTCGACGCCGCCAGCCGCAAGGTGCCCGTGATCGCCAATATCCGGCCCAGCGGCGACACCTACCTG ATGGAAGACTTCTACTTCGCGGGTGGCATGCGCGGCATGATGAGCCGCTTGACCAGCCATCTGAAGCTGGACGCCATGAC GGTCAGCGGCCGCACCCTGGGCGAAACGCTGGAAGGTGCCGAGGTCTACAACGACGACGTGATCCGGCCACTGGACAATC CCATTTATGCCGAAGGCGCGCTCGCCGTGCTGCGCGGCAACCTGGCGCCCGGCGGCTGCGTGATCAAGCCCAGCGCGTGC GCCCCGAAGTTCCTGAAGCACACTGGCCCGGCCCTGGTGTTTGACGACTACCCATCCATGAAGGCAGCCGTTGACGACGA GAACCTTGACGTCACAGAAAACCATGTCATGGTGCTGCGCAACGCCGGCCCGCAGGGCGGCCCGGGCATGCCCGAGTGGG GCATGTTGCCCATTCCCCTGAAGCTGGTGAAGCAGGGCGTGAAAGACATGGTGCGCATTTCAGACGCCCGCATGAGTGGA ACGAGCTACGGCGCATGCATCCTGCATGTGGCGCCTGAAGCCTACATCGGCGGCCCGCTGGCACTGGTCAAAACCGGCGA CCTGATTTCGGTGGACGTGCCAGGCCGGCGCATTCACCTGGAGGTCAGCGACGAAGAACTGGCGCAGCGCCGGGCCGCCT GGACGCCGCTGCCCAAACGCTATGAACGCGGCTACGGCTGGATGGCCGCGCGCCATATCCAGCAGGCCGACCAGGGCTGT GATTTTGATTTTCTGGAAACCTCGTTTGGCGCGCCGGTGGGCGAGCCCGACATTTACTGA
Upstream 100 bases:
>100_bases TTCCACCCATTGCACCAGGCCCTGATCGCCGACCTCAAGCCCTACTTTGAATGGGCGGCGGTGGATTACACGCTGTGAAC CCCGAGACCCAAGGATTGAC
Downstream 100 bases:
>100_bases CACGAACAGACACGAACAACACGAAGTGATAGGAAGGACTCCCATGACCCTCAAAGCCGAAACCCGCGACAAGCTCAAAA CCGTCAGCACCGCCACGCTG
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD 1 [H]
Number of amino acids: Translated: 579; Mature: 578
Protein sequence:
>579_residues MSKKTYESLRSARWFAPDDVRSFGHRSRVMQLGYGPEDWVGKPVIAIVNTWSDIGTCHGHFKQRVEDVKRGVLQAGGFPI ELPAISLSESIVKPTTMLYRNMLAMETEELLRSHPIDGVVLMGGCDKTTPGLLMGAMSAGMPCIYLPAGPMLSGNVKGKV LGSGSDTWKYWDDRRAGKISAAQWLEVEGGIARSHGHCMTMGTASTMTGIAEACGFTLPGASSIPAVDANHIRMASECGR RVVSMVWEDLTPAKMLSRASFENAIVIAMAMGCSTNAIIHLVAMSRRAGEHCAVGLDDFDAASRKVPVIANIRPSGDTYL MEDFYFAGGMRGMMSRLTSHLKLDAMTVSGRTLGETLEGAEVYNDDVIRPLDNPIYAEGALAVLRGNLAPGGCVIKPSAC APKFLKHTGPALVFDDYPSMKAAVDDENLDVTENHVMVLRNAGPQGGPGMPEWGMLPIPLKLVKQGVKDMVRISDARMSG TSYGACILHVAPEAYIGGPLALVKTGDLISVDVPGRRIHLEVSDEELAQRRAAWTPLPKRYERGYGWMAARHIQQADQGC DFDFLETSFGAPVGEPDIY
Sequences:
>Translated_579_residues MSKKTYESLRSARWFAPDDVRSFGHRSRVMQLGYGPEDWVGKPVIAIVNTWSDIGTCHGHFKQRVEDVKRGVLQAGGFPI ELPAISLSESIVKPTTMLYRNMLAMETEELLRSHPIDGVVLMGGCDKTTPGLLMGAMSAGMPCIYLPAGPMLSGNVKGKV LGSGSDTWKYWDDRRAGKISAAQWLEVEGGIARSHGHCMTMGTASTMTGIAEACGFTLPGASSIPAVDANHIRMASECGR RVVSMVWEDLTPAKMLSRASFENAIVIAMAMGCSTNAIIHLVAMSRRAGEHCAVGLDDFDAASRKVPVIANIRPSGDTYL MEDFYFAGGMRGMMSRLTSHLKLDAMTVSGRTLGETLEGAEVYNDDVIRPLDNPIYAEGALAVLRGNLAPGGCVIKPSAC APKFLKHTGPALVFDDYPSMKAAVDDENLDVTENHVMVLRNAGPQGGPGMPEWGMLPIPLKLVKQGVKDMVRISDARMSG TSYGACILHVAPEAYIGGPLALVKTGDLISVDVPGRRIHLEVSDEELAQRRAAWTPLPKRYERGYGWMAARHIQQADQGC DFDFLETSFGAPVGEPDIY >Mature_578_residues SKKTYESLRSARWFAPDDVRSFGHRSRVMQLGYGPEDWVGKPVIAIVNTWSDIGTCHGHFKQRVEDVKRGVLQAGGFPIE LPAISLSESIVKPTTMLYRNMLAMETEELLRSHPIDGVVLMGGCDKTTPGLLMGAMSAGMPCIYLPAGPMLSGNVKGKVL GSGSDTWKYWDDRRAGKISAAQWLEVEGGIARSHGHCMTMGTASTMTGIAEACGFTLPGASSIPAVDANHIRMASECGRR VVSMVWEDLTPAKMLSRASFENAIVIAMAMGCSTNAIIHLVAMSRRAGEHCAVGLDDFDAASRKVPVIANIRPSGDTYLM EDFYFAGGMRGMMSRLTSHLKLDAMTVSGRTLGETLEGAEVYNDDVIRPLDNPIYAEGALAVLRGNLAPGGCVIKPSACA PKFLKHTGPALVFDDYPSMKAAVDDENLDVTENHVMVLRNAGPQGGPGMPEWGMLPIPLKLVKQGVKDMVRISDARMSGT SYGACILHVAPEAYIGGPLALVKTGDLISVDVPGRRIHLEVSDEELAQRRAAWTPLPKRYERGYGWMAARHIQQADQGCD FDFLETSFGAPVGEPDIY
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=582, Percent_Identity=32.9896907216495, Blast_Score=264, Evalue=9e-72, Organism=Escherichia coli, GI1788157, Length=551, Percent_Identity=31.0344827586207, Blast_Score=179, Evalue=6e-46, Organism=Escherichia coli, GI2367371, Length=489, Percent_Identity=31.0838445807771, Blast_Score=169, Evalue=4e-43, Organism=Escherichia coli, GI1786464, Length=454, Percent_Identity=32.15859030837, Blast_Score=162, Evalue=7e-41, Organism=Saccharomyces cerevisiae, GI6322476, Length=550, Percent_Identity=33.0909090909091, Blast_Score=256, Evalue=8e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 62565; Mature: 62434
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: PS00886 ILVD_EDD_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKTYESLRSARWFAPDDVRSFGHRSRVMQLGYGPEDWVGKPVIAIVNTWSDIGTCHGH CCCHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCHHHCCCCEEEEEECCHHHHHHHHH FKQRVEDVKRGVLQAGGFPIELPAISLSESIVKPTTMLYRNMLAMETEELLRSHPIDGVV HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE LMGGCDKTTPGLLMGAMSAGMPCIYLPAGPMLSGNVKGKVLGSGSDTWKYWDDRRAGKIS EECCCCCCCCHHHHHHHHCCCCEEEECCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCC AAQWLEVEGGIARSHGHCMTMGTASTMTGIAEACGFTLPGASSIPAVDANHIRMASECGR HHHEEEECCCEECCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH RVVSMVWEDLTPAKMLSRASFENAIVIAMAMGCSTNAIIHLVAMSRRAGEHCAVGLDDFD HHHHHHHHCCCHHHHHHHHCCCCEEEEEEEECCCCCHHEEEEHHHCCCCCCEEECCCCCC AASRKVPVIANIRPSGDTYLMEDFYFAGGMRGMMSRLTSHLKLDAMTVSGRTLGETLEGA CCCCCCCEEEEECCCCCCEEEHHHHHHCCHHHHHHHHHHHHEEEEEEECCCHHHHHHCCC EVYNDDVIRPLDNPIYAEGALAVLRGNLAPGGCVIKPSACAPKFLKHTGPALVFDDYPSM HHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCHHHHHHCCCEEEEECCCCC KAAVDDENLDVTENHVMVLRNAGPQGGPGMPEWGMLPIPLKLVKQGVKDMVRISDARMSG EEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC TSYGACILHVAPEAYIGGPLALVKTGDLISVDVPGRRIHLEVSDEELAQRRAAWTPLPKR CCCCEEEEEECCCHHCCCCEEEEECCCEEEEECCCCEEEEEECHHHHHHHHHCCCCCHHH YERGYGWMAARHIQQADQGCDFDFLETSFGAPVGEPDIY HHCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCC >Mature Secondary Structure SKKTYESLRSARWFAPDDVRSFGHRSRVMQLGYGPEDWVGKPVIAIVNTWSDIGTCHGH CCHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCHHHCCCCEEEEEECCHHHHHHHHH FKQRVEDVKRGVLQAGGFPIELPAISLSESIVKPTTMLYRNMLAMETEELLRSHPIDGVV HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE LMGGCDKTTPGLLMGAMSAGMPCIYLPAGPMLSGNVKGKVLGSGSDTWKYWDDRRAGKIS EECCCCCCCCHHHHHHHHCCCCEEEECCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCC AAQWLEVEGGIARSHGHCMTMGTASTMTGIAEACGFTLPGASSIPAVDANHIRMASECGR HHHEEEECCCEECCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH RVVSMVWEDLTPAKMLSRASFENAIVIAMAMGCSTNAIIHLVAMSRRAGEHCAVGLDDFD HHHHHHHHCCCHHHHHHHHCCCCEEEEEEEECCCCCHHEEEEHHHCCCCCCEEECCCCCC AASRKVPVIANIRPSGDTYLMEDFYFAGGMRGMMSRLTSHLKLDAMTVSGRTLGETLEGA CCCCCCCEEEEECCCCCCEEEHHHHHHCCHHHHHHHHHHHHEEEEEEECCCHHHHHHCCC EVYNDDVIRPLDNPIYAEGALAVLRGNLAPGGCVIKPSACAPKFLKHTGPALVFDDYPSM HHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCHHHHHHCCCEEEEECCCCC KAAVDDENLDVTENHVMVLRNAGPQGGPGMPEWGMLPIPLKLVKQGVKDMVRISDARMSG EEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC TSYGACILHVAPEAYIGGPLALVKTGDLISVDVPGRRIHLEVSDEELAQRRAAWTPLPKR CCCCEEEEEECCCHHCCCCEEEEECCCEEEEECCCCEEEEEECHHHHHHHHHCCCCCHHH YERGYGWMAARHIQQADQGCDFDFLETSFGAPVGEPDIY HHCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11932238 [H]