| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yheS [H]
Identifier: 91787868
GI number: 91787868
Start: 2058300
End: 2060336
Strand: Reverse
Name: yheS [H]
Synonym: Bpro_1992
Alternate gene names: 91787868
Gene position: 2060336-2058300 (Counterclockwise)
Preceding gene: 91787869
Following gene: 91787867
Centisome position: 39.62
GC content: 62.2
Gene sequence:
>2037_bases ATGATTACCCTTAAAAACGTGGTGCTGCGTCGCGGCGCCAAAGTTATCCTCGACAGCGCCTCTGTCAGTCTCAACCCCGG CGAAAAAATCGGCCTGGTGGGCCGCAATGGCGCGGGAAAGTCCTCGCTGTTTGCGATGCTCAACGGCACGCTGCATGAAG ACGGCGGTGAATACACCATCCCGGCACAGTGGCGCATGTCCCAGGTCGCGCAGGACATGCCTGAGACAGAGCAAAGCGCC ACCAGCTACGTGGTTGAAGGTGACGTGGTCCTGCTGGCTGCGCAGGCTGAAGTGGAGGCCTCCGAGGCCAGCGGCGACGG CGACCGCATGGCCCACGCTTATATGGAGCTCTACGACGCGGGCGCGCACGACGCCCAGGCACGCGCGCAGGCCCTGATTT TGGGCCTGGGCTTCAAGGTCAGCGAGCTCGACAACCCCGTCAACAGCTTCTCGGGCGGCTGGCGCATGCGCCTGCAGCTG GCGCGCGCCCTGATGTGCCCGTCAGACCTGCTGCTGCTGGACGAACCGACAAACCACCTGGACCTGGACGCGCTGGTCTG GCTGGAGGCCTGGCTCAAGCGCTACCAGGGCACCATGCTGGTCATCAGCCATGACCGGGAGTTTCTGGATGCGGTAACCG ATGTCACGGTGCACATTGAAAACGCCAAACTCACACGCTACGGCGGCAACTACAGCAAGTTTGAAGACCTGCGTTCGGAA CAGATGGCCTTGCAGCAGACCGCTTTTGCCAAGCAGCAGGACAAGATCGCCCACCTGCAGAAATTCATTGCGCGCTTCAA GGCCAAGGCCAGCAAGGCCAAGCAGGCGCAAAGCCGGGTCAAGGCACTGGACCGCATGGAGAAAATCGCGCCGCTGCTGG CTGAAGCCGACTTCACCTTCGAGTTCAAGGAGCCGGCCAACCTGCCTAACCCCATGCTGTCCATGCAGAACGTCTACTTC GGCTATCCGCCGCCAGCAGATGCACCGGAGGGCACTCCGCCTACCGTCATCGTGCAAAACGTCAGCAAATCGGTGCTGGC CGGCCAGCGCATCGGCATTCTGGGCGCCAACGGCCAGGGCAAATCGACCGTGGTCAAAACCATCGCACGCGCGCTGGCAC CTATTCAAGGAGAGATGACCGAAGGCAAGGGCCTGAACATCGGCTACTTTGCCCAGCAGGAACTGGACGTGCTGCGCCCG GCCGACAACCCGCTGGAGCACATGATCCGCCTGGTCAAAGAGGTGACTGCCGCCGGCAAGATCAGCGGCCAGGCCACGCG CGAGCAGGACCTGCGCAGCTTTCTGGGCAACTTCAACTTTGGCGGCGACATGGTCAAGCAGGCCGTGGGCAGCATGAGCG GCGGCGAAAAAGCCCGCCTGGTGCTGTGCATGATCGTCTGGCAGCGCCCCAACCTGTTGCTGCTCGATGAACCGACCAAC CACCTGGACCTGGCCACGCGCGAAGCGCTGTCGATGGCGCTCAACGAGTTTGAAGGCACTGTGATGCTGGTCAGCCACGA CCGTGCGCTGCTGCGAGCCGTGTGCGACGAGTTCTGGATGGTCTCGCGCGGCGGCGTGGCCCCGTTTGACGGCGACCTCG ACGACTACCAGCGCTACCTGCTCGATGAAGCCAAGCGACAGCGCGAAGAGGCTAAAAAGTCGACCAGCAGTGCGGCTGCA CCGGCGACTGCCACCAGCACCAGCGCTACCAAACCCATAGCTGGGAACGTAAATTCAACCGGAGCCAAAGCCGGTTCCGA TGCCAAAAAGTCATCCGGTAAAAAAGACGAAGCCCAGCGCCGCCAGCAGCAATCCGACGTCACCAAACCGCTGCGCAAGG AACTGGACAAGATAGACAGCCGGCTGCAGTCCCTGAACACCGAGCGCGACAGCCTGCAAACCGCCCTGACCACCATCACC GCACCGGCAGAAATCGCCCAGGCCGGCAAGCGACTCAAGGCCATTGACAGTGAAATAGGCACGCTGGAAGAACGCTGGCT GGAACTGACCGAGCAGATCGAGACTGCCACGGTGTAA
Upstream 100 bases:
>100_bases CTGAAGCGCTGGCCCGGAATTTGCGCCTGGATCGATGGGTGTGCAGCGTGCCGCCCGAATAATTTTTCTGATCCTGTTGG ATCTAGAGTCAGTGGTTTAA
Downstream 100 bases:
>100_bases AGTGGTCGCTCCGGCACCCATCGACTTTTCACCTGTTTGAAAGGGTCCTGAAATGCCTGCTGCTTCCCTTCTCAACAAGG CCTCCAGCGATGCCGCCCTG
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 678; Mature: 678
Protein sequence:
>678_residues MITLKNVVLRRGAKVILDSASVSLNPGEKIGLVGRNGAGKSSLFAMLNGTLHEDGGEYTIPAQWRMSQVAQDMPETEQSA TSYVVEGDVVLLAAQAEVEASEASGDGDRMAHAYMELYDAGAHDAQARAQALILGLGFKVSELDNPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLKRYQGTMLVISHDREFLDAVTDVTVHIENAKLTRYGGNYSKFEDLRSE QMALQQTAFAKQQDKIAHLQKFIARFKAKASKAKQAQSRVKALDRMEKIAPLLAEADFTFEFKEPANLPNPMLSMQNVYF GYPPPADAPEGTPPTVIVQNVSKSVLAGQRIGILGANGQGKSTVVKTIARALAPIQGEMTEGKGLNIGYFAQQELDVLRP ADNPLEHMIRLVKEVTAAGKISGQATREQDLRSFLGNFNFGGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN HLDLATREALSMALNEFEGTVMLVSHDRALLRAVCDEFWMVSRGGVAPFDGDLDDYQRYLLDEAKRQREEAKKSTSSAAA PATATSTSATKPIAGNVNSTGAKAGSDAKKSSGKKDEAQRRQQQSDVTKPLRKELDKIDSRLQSLNTERDSLQTALTTIT APAEIAQAGKRLKAIDSEIGTLEERWLELTEQIETATV
Sequences:
>Translated_678_residues MITLKNVVLRRGAKVILDSASVSLNPGEKIGLVGRNGAGKSSLFAMLNGTLHEDGGEYTIPAQWRMSQVAQDMPETEQSA TSYVVEGDVVLLAAQAEVEASEASGDGDRMAHAYMELYDAGAHDAQARAQALILGLGFKVSELDNPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLKRYQGTMLVISHDREFLDAVTDVTVHIENAKLTRYGGNYSKFEDLRSE QMALQQTAFAKQQDKIAHLQKFIARFKAKASKAKQAQSRVKALDRMEKIAPLLAEADFTFEFKEPANLPNPMLSMQNVYF GYPPPADAPEGTPPTVIVQNVSKSVLAGQRIGILGANGQGKSTVVKTIARALAPIQGEMTEGKGLNIGYFAQQELDVLRP ADNPLEHMIRLVKEVTAAGKISGQATREQDLRSFLGNFNFGGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN HLDLATREALSMALNEFEGTVMLVSHDRALLRAVCDEFWMVSRGGVAPFDGDLDDYQRYLLDEAKRQREEAKKSTSSAAA PATATSTSATKPIAGNVNSTGAKAGSDAKKSSGKKDEAQRRQQQSDVTKPLRKELDKIDSRLQSLNTERDSLQTALTTIT APAEIAQAGKRLKAIDSEIGTLEERWLELTEQIETATV >Mature_678_residues MITLKNVVLRRGAKVILDSASVSLNPGEKIGLVGRNGAGKSSLFAMLNGTLHEDGGEYTIPAQWRMSQVAQDMPETEQSA TSYVVEGDVVLLAAQAEVEASEASGDGDRMAHAYMELYDAGAHDAQARAQALILGLGFKVSELDNPVNSFSGGWRMRLQL ARALMCPSDLLLLDEPTNHLDLDALVWLEAWLKRYQGTMLVISHDREFLDAVTDVTVHIENAKLTRYGGNYSKFEDLRSE QMALQQTAFAKQQDKIAHLQKFIARFKAKASKAKQAQSRVKALDRMEKIAPLLAEADFTFEFKEPANLPNPMLSMQNVYF GYPPPADAPEGTPPTVIVQNVSKSVLAGQRIGILGANGQGKSTVVKTIARALAPIQGEMTEGKGLNIGYFAQQELDVLRP ADNPLEHMIRLVKEVTAAGKISGQATREQDLRSFLGNFNFGGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN HLDLATREALSMALNEFEGTVMLVSHDRALLRAVCDEFWMVSRGGVAPFDGDLDDYQRYLLDEAKRQREEAKKSTSSAAA PATATSTSATKPIAGNVNSTGAKAGSDAKKSSGKKDEAQRRQQQSDVTKPLRKELDKIDSRLQSLNTERDSLQTALTTIT APAEIAQAGKRLKAIDSEIGTLEERWLELTEQIETATV
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=555, Percent_Identity=36.036036036036, Blast_Score=343, Evalue=2e-94, Organism=Homo sapiens, GI10947137, Length=580, Percent_Identity=32.9310344827586, Blast_Score=320, Evalue=4e-87, Organism=Homo sapiens, GI27881506, Length=548, Percent_Identity=33.7591240875912, Blast_Score=318, Evalue=9e-87, Organism=Homo sapiens, GI69354671, Length=558, Percent_Identity=33.1541218637993, Blast_Score=258, Evalue=1e-68, Organism=Homo sapiens, GI10947135, Length=557, Percent_Identity=33.0341113105925, Blast_Score=258, Evalue=1e-68, Organism=Escherichia coli, GI1789751, Length=679, Percent_Identity=43.4462444771723, Blast_Score=579, Evalue=1e-166, Organism=Escherichia coli, GI1787041, Length=551, Percent_Identity=31.7604355716878, Blast_Score=281, Evalue=8e-77, Organism=Escherichia coli, GI1787182, Length=670, Percent_Identity=27.6119402985075, Blast_Score=211, Evalue=2e-55, Organism=Escherichia coli, GI2367384, Length=541, Percent_Identity=29.3900184842884, Blast_Score=208, Evalue=8e-55, Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=29.3193717277487, Blast_Score=73, Evalue=7e-14, Organism=Escherichia coli, GI1786345, Length=219, Percent_Identity=30.5936073059361, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87081782, Length=232, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1786398, Length=211, Percent_Identity=26.5402843601896, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI48994997, Length=239, Percent_Identity=27.1966527196653, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1788506, Length=228, Percent_Identity=23.2456140350877, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI145693107, Length=579, Percent_Identity=21.0708117443869, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI87081709, Length=209, Percent_Identity=23.9234449760766, Blast_Score=62, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17553372, Length=549, Percent_Identity=36.6120218579235, Blast_Score=340, Evalue=2e-93, Organism=Caenorhabditis elegans, GI17555318, Length=553, Percent_Identity=34.3580470162749, Blast_Score=306, Evalue=3e-83, Organism=Caenorhabditis elegans, GI17559834, Length=569, Percent_Identity=32.5131810193322, Blast_Score=298, Evalue=6e-81, Organism=Caenorhabditis elegans, GI25146777, Length=233, Percent_Identity=29.1845493562232, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193211017, Length=262, Percent_Identity=28.2442748091603, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71996809, Length=262, Percent_Identity=28.2442748091603, Blast_Score=68, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193211015, Length=262, Percent_Identity=28.2442748091603, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17541710, Length=217, Percent_Identity=27.1889400921659, Blast_Score=67, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115533592, Length=212, Percent_Identity=25.9433962264151, Blast_Score=66, Evalue=6e-11, Organism=Caenorhabditis elegans, GI212646699, Length=242, Percent_Identity=28.099173553719, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=558, Percent_Identity=32.9749103942652, Blast_Score=314, Evalue=3e-86, Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=33.394495412844, Blast_Score=297, Evalue=3e-81, Organism=Saccharomyces cerevisiae, GI6325030, Length=389, Percent_Identity=29.5629820051414, Blast_Score=143, Evalue=7e-35, Organism=Saccharomyces cerevisiae, GI6324314, Length=394, Percent_Identity=28.4263959390863, Blast_Score=141, Evalue=4e-34, Organism=Saccharomyces cerevisiae, GI6323278, Length=394, Percent_Identity=28.4263959390863, Blast_Score=139, Evalue=1e-33, Organism=Drosophila melanogaster, GI24666836, Length=552, Percent_Identity=37.6811594202899, Blast_Score=367, Evalue=1e-101, Organism=Drosophila melanogaster, GI24642252, Length=549, Percent_Identity=34.4262295081967, Blast_Score=321, Evalue=1e-87, Organism=Drosophila melanogaster, GI18859989, Length=549, Percent_Identity=34.4262295081967, Blast_Score=321, Evalue=1e-87, Organism=Drosophila melanogaster, GI24641342, Length=558, Percent_Identity=31.7204301075269, Blast_Score=287, Evalue=1e-77, Organism=Drosophila melanogaster, GI116007184, Length=196, Percent_Identity=27.0408163265306, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI221500365, Length=196, Percent_Identity=27.0408163265306, Blast_Score=67, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 74030; Mature: 74030
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITLKNVVLRRGAKVILDSASVSLNPGEKIGLVGRNGAGKSSLFAMLNGTLHEDGGEYTI CCCHHHHHHHCCCEEEEECCCEECCCCCEEEEEECCCCCHHHHHHHHCCCEECCCCCEEC PAQWRMSQVAQDMPETEQSATSYVVEGDVVLLAAQAEVEASEASGDGDRMAHAYMELYDA CHHHHHHHHHHCCCCHHHHHCCEEEECCEEEEEECCCCCHHCCCCCHHHHHHHHHHHHHC GAHDAQARAQALILGLGFKVSELDNPVNSFSGGWRMRLQLARALMCPSDLLLLDEPTNHL CCCHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC DLDALVWLEAWLKRYQGTMLVISHDREFLDAVTDVTVHIENAKLTRYGGNYSKFEDLRSE CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCEEEEEECCEEEECCCCHHHHHHHHHH QMALQQTAFAKQQDKIAHLQKFIARFKAKASKAKQAQSRVKALDRMEKIAPLLAEADFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE EFKEPANLPNPMLSMQNVYFGYPPPADAPEGTPPTVIVQNVSKSVLAGQRIGILGANGQG EECCCCCCCCHHHHHCCCEECCCCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEECCCCC KSTVVKTIARALAPIQGEMTEGKGLNIGYFAQQELDVLRPADNPLEHMIRLVKEVTAAGK HHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHC ISGQATREQDLRSFLGNFNFGGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHEEEEEEEECCCCEEEEECCCC HLDLATREALSMALNEFEGTVMLVSHDRALLRAVCDEFWMVSRGGVAPFDGDLDDYQRYL CHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH LDEAKRQREEAKKSTSSAAAPATATSTSATKPIAGNVNSTGAKAGSDAKKSSGKKDEAQR HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHH RQQQSDVTKPLRKELDKIDSRLQSLNTERDSLQTALTTITAPAEIAQAGKRLKAIDSEIG HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH TLEERWLELTEQIETATV HHHHHHHHHHHHHHHCCC >Mature Secondary Structure MITLKNVVLRRGAKVILDSASVSLNPGEKIGLVGRNGAGKSSLFAMLNGTLHEDGGEYTI CCCHHHHHHHCCCEEEEECCCEECCCCCEEEEEECCCCCHHHHHHHHCCCEECCCCCEEC PAQWRMSQVAQDMPETEQSATSYVVEGDVVLLAAQAEVEASEASGDGDRMAHAYMELYDA CHHHHHHHHHHCCCCHHHHHCCEEEECCEEEEEECCCCCHHCCCCCHHHHHHHHHHHHHC GAHDAQARAQALILGLGFKVSELDNPVNSFSGGWRMRLQLARALMCPSDLLLLDEPTNHL CCCHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC DLDALVWLEAWLKRYQGTMLVISHDREFLDAVTDVTVHIENAKLTRYGGNYSKFEDLRSE CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCEEEEEECCEEEECCCCHHHHHHHHHH QMALQQTAFAKQQDKIAHLQKFIARFKAKASKAKQAQSRVKALDRMEKIAPLLAEADFTF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE EFKEPANLPNPMLSMQNVYFGYPPPADAPEGTPPTVIVQNVSKSVLAGQRIGILGANGQG EECCCCCCCCHHHHHCCCEECCCCCCCCCCCCCCEEEEHHHHHHHHCCCCEEEEECCCCC KSTVVKTIARALAPIQGEMTEGKGLNIGYFAQQELDVLRPADNPLEHMIRLVKEVTAAGK HHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHHC ISGQATREQDLRSFLGNFNFGGDMVKQAVGSMSGGEKARLVLCMIVWQRPNLLLLDEPTN CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHEEEEEEEECCCCEEEEECCCC HLDLATREALSMALNEFEGTVMLVSHDRALLRAVCDEFWMVSRGGVAPFDGDLDDYQRYL CHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH LDEAKRQREEAKKSTSSAAAPATATSTSATKPIAGNVNSTGAKAGSDAKKSSGKKDEAQR HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHH RQQQSDVTKPLRKELDKIDSRLQSLNTERDSLQTALTTITAPAEIAQAGKRLKAIDSEIG HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH TLEERWLELTEQIETATV HHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]