| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787830
Identifier: 91787830
GI number: 91787830
Start: 2018946
End: 2020934
Strand: Reverse
Name: 91787830
Synonym: Bpro_1953
Alternate gene names: NA
Gene position: 2020934-2018946 (Counterclockwise)
Preceding gene: 91787836
Following gene: 91787824
Centisome position: 38.86
GC content: 55.86
Gene sequence:
>1989_bases GTGTCGGGAGCTCAGTACCTATATCGCCGCGACAGCGGCACTTACTATATTCGCCTTTGCGTGCCAGCGCGTTTGAAGGT GGCGGTCGGCAAAGGTGAAATCCATCGAACCACGGGCTGCCGGGATTACCGGCTTGCCAAGATCGTGGCAGCCGAACTTG CCGCACACTGGCACCGGGCGATTCAAGCGCTGGAACGCATGGACATCTCGAAGATCAAGGCCGGATCCATCAAGCTGCTT GGTGACGGTTACATCCCGTTAACCGATGCGGCTGAGGCGTTAGGCACCACCCCCTCATCTCTTGCCCAACGGCTTACCAT CCGCCAGGCTCATTTCTTTGTCGAGGCGAACGACTGGCTCGGCTGGGCGGTAGAAGACATCCACGAGTCTCTGGAGCACA TCCAGGACGAGCTTGGACAGGTCGAGGTCGTCATCGATGCGAACAAGATGGGCGGGCCGGCAGCACAGCGTCGGTTCAGT GGCCTGCTCCGGATCCGCTTTCCTGAAGAAGTGATCGCGATGGTGCGCACCAATCAACCGGCTGGACTGTGTCAGTTCCT GCTGTGGCCATCCCCCGATCGTGGTTTTGTATGCGACCTACCAGGCCAGCCGGTTGACAGCCAGATGTTGCAGATCCGCC GGATCGATGTTGAGGCCATGCGCCTGGACCTGGCGGCACAGCTCACCCCGGATATGCTGGCCTCGGCACATCCAACCCTG CCCCAGCCGGACACAACGACCACCCTACCCACGCCTTCAACGGGTATGACCTTTTTGGTGTTCCGCGATGAATATTTGAA ACGCAACGCGGGCTTCTGGAAGGCCGACCAGGTGCGCCGACGCCAGGACCAGTTTGAGGCATTTCTTGAACTGATGGGGG ATCTTCAACTCGCCAAAATAGACCGGGCCACGATACGGACATTTTCAGACGAGATCGCAAAAATTCCCGATGAGCGACAT AACGTTCGCCGTAAATTCAAGCGCCCCGACGCAGACTATCAAGAATTGATCGAGCTGGCCGAAAAACACAACTTGCCCAG GTTAACGGTCTCTGCTCAGCAACGGATGCTCGATGGAATTTCGGAAATTTTCGCGTGGGCTGAACGAGAAACGCTAATCA CCAGCAATCCAGCCAAGGGGCTCGGCGGTGAACTGAAAAAACGCTCAGGAAGCACCAAGGTCAAAGCGCATGAGCAACGC GACCCGCTCTCCGACGTGGACCTTCAGAAGATATTTTCTGCAGTCTGGTTCACCACGGGAAGCGGCCTAAAAACTGCCAA AGGCAAGTTCTACACCTACAGGCCGCATTACTTCTGGCTGCCCTTGCTCGCCATCTATCACGGTGGGCGACTGAATGAGC TGTCACAACTCTACCTCGACGACATCAAGACAAGTGAAAGCGGCGTTCCTTATCTCGACTTTAATTTGTTGGGCGAAGAC AAGATGGACGTCGACGAAGCAGACCGGAGCGCCGCCACCGACAAGTCATTAAAAACAGTGAGTTCGCAGCGCGTAGTCCC CATGCACAAGCACCTGGTGGACCTGGGCTTCCGGGAATATGTGAGTGCATTGCGGGACGCCGGCTACAAGCGACTTTTCC CGGAGTTGCGTTTTAACAAGGCTAAGGGCTACGGCAAGGCGGCCGGGAGCTGGTTCAACGAGCGTTTTCTCGGCAAAGAA CTCGGTATCCCAAGAAATGGACGTAAGACGTTTCATTCGATGCGCCACAACTTTGCCACAGCACTGGGCGCCACTGCTAC GCCTACCACCATAAAGTCTGACCTAATGGGACATTCCCGCGGGCTTGCACTGGTAGAGGCCCGCTACGACAAGGGAGGAG ATTTGCTTGAGCGAAAAAAAGTCATTGACGCAATTCAATACGCCTTGCCGCCCATTGCCCACTTCAATATCAAAGACGGA ATCCAGGCGATCAAGGACGCATTGAAGACAAAGGAATCCCACAAAAAAACGAAGAGGTATCCGTCCTGA
Upstream 100 bases:
>100_bases CCCTTCACCCGCTCCATAGTTTCGTAAGCTATTGATCTTGCTTATGATTCTGTGAGGCTGACACGCCGCTTGCAGGTCTA CTACGAAAGTGGGGACCAAA
Downstream 100 bases:
>100_bases AAGGCCGCCGCCGTCAAGGCCTGCGGGTGGTCATGCCAGCAGTTCCTCTTGTCGCTGAACTTTGAGGACGCGCAGTTGTC TGTTCTTCTGTCCGGCTACC
Product: putative integrase
Products: NA
Alternate protein names: Integrase; Phage-Related Integrase; Phage Integrase; Phage Integrase Family Protein; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase; Phage Integerase; DNA-Binfing Protein; Integrase/Resolvase Recombinase Protein
Number of amino acids: Translated: 662; Mature: 661
Protein sequence:
>662_residues MSGAQYLYRRDSGTYYIRLCVPARLKVAVGKGEIHRTTGCRDYRLAKIVAAELAAHWHRAIQALERMDISKIKAGSIKLL GDGYIPLTDAAEALGTTPSSLAQRLTIRQAHFFVEANDWLGWAVEDIHESLEHIQDELGQVEVVIDANKMGGPAAQRRFS GLLRIRFPEEVIAMVRTNQPAGLCQFLLWPSPDRGFVCDLPGQPVDSQMLQIRRIDVEAMRLDLAAQLTPDMLASAHPTL PQPDTTTTLPTPSTGMTFLVFRDEYLKRNAGFWKADQVRRRQDQFEAFLELMGDLQLAKIDRATIRTFSDEIAKIPDERH NVRRKFKRPDADYQELIELAEKHNLPRLTVSAQQRMLDGISEIFAWAERETLITSNPAKGLGGELKKRSGSTKVKAHEQR DPLSDVDLQKIFSAVWFTTGSGLKTAKGKFYTYRPHYFWLPLLAIYHGGRLNELSQLYLDDIKTSESGVPYLDFNLLGED KMDVDEADRSAATDKSLKTVSSQRVVPMHKHLVDLGFREYVSALRDAGYKRLFPELRFNKAKGYGKAAGSWFNERFLGKE LGIPRNGRKTFHSMRHNFATALGATATPTTIKSDLMGHSRGLALVEARYDKGGDLLERKKVIDAIQYALPPIAHFNIKDG IQAIKDALKTKESHKKTKRYPS
Sequences:
>Translated_662_residues MSGAQYLYRRDSGTYYIRLCVPARLKVAVGKGEIHRTTGCRDYRLAKIVAAELAAHWHRAIQALERMDISKIKAGSIKLL GDGYIPLTDAAEALGTTPSSLAQRLTIRQAHFFVEANDWLGWAVEDIHESLEHIQDELGQVEVVIDANKMGGPAAQRRFS GLLRIRFPEEVIAMVRTNQPAGLCQFLLWPSPDRGFVCDLPGQPVDSQMLQIRRIDVEAMRLDLAAQLTPDMLASAHPTL PQPDTTTTLPTPSTGMTFLVFRDEYLKRNAGFWKADQVRRRQDQFEAFLELMGDLQLAKIDRATIRTFSDEIAKIPDERH NVRRKFKRPDADYQELIELAEKHNLPRLTVSAQQRMLDGISEIFAWAERETLITSNPAKGLGGELKKRSGSTKVKAHEQR DPLSDVDLQKIFSAVWFTTGSGLKTAKGKFYTYRPHYFWLPLLAIYHGGRLNELSQLYLDDIKTSESGVPYLDFNLLGED KMDVDEADRSAATDKSLKTVSSQRVVPMHKHLVDLGFREYVSALRDAGYKRLFPELRFNKAKGYGKAAGSWFNERFLGKE LGIPRNGRKTFHSMRHNFATALGATATPTTIKSDLMGHSRGLALVEARYDKGGDLLERKKVIDAIQYALPPIAHFNIKDG IQAIKDALKTKESHKKTKRYPS >Mature_661_residues SGAQYLYRRDSGTYYIRLCVPARLKVAVGKGEIHRTTGCRDYRLAKIVAAELAAHWHRAIQALERMDISKIKAGSIKLLG DGYIPLTDAAEALGTTPSSLAQRLTIRQAHFFVEANDWLGWAVEDIHESLEHIQDELGQVEVVIDANKMGGPAAQRRFSG LLRIRFPEEVIAMVRTNQPAGLCQFLLWPSPDRGFVCDLPGQPVDSQMLQIRRIDVEAMRLDLAAQLTPDMLASAHPTLP QPDTTTTLPTPSTGMTFLVFRDEYLKRNAGFWKADQVRRRQDQFEAFLELMGDLQLAKIDRATIRTFSDEIAKIPDERHN VRRKFKRPDADYQELIELAEKHNLPRLTVSAQQRMLDGISEIFAWAERETLITSNPAKGLGGELKKRSGSTKVKAHEQRD PLSDVDLQKIFSAVWFTTGSGLKTAKGKFYTYRPHYFWLPLLAIYHGGRLNELSQLYLDDIKTSESGVPYLDFNLLGEDK MDVDEADRSAATDKSLKTVSSQRVVPMHKHLVDLGFREYVSALRDAGYKRLFPELRFNKAKGYGKAAGSWFNERFLGKEL GIPRNGRKTFHSMRHNFATALGATATPTTIKSDLMGHSRGLALVEARYDKGGDLLERKKVIDAIQYALPPIAHFNIKDGI QAIKDALKTKESHKKTKRYPS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74661; Mature: 74530
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGAQYLYRRDSGTYYIRLCVPARLKVAVGKGEIHRTTGCRDYRLAKIVAAELAAHWHRA CCCCCEEEEECCCCEEEEEEECCEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHH IQALERMDISKIKAGSIKLLGDGYIPLTDAAEALGTTPSSLAQRLTIRQAHFFVEANDWL HHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHEEEEEECCCC GWAVEDIHESLEHIQDELGQVEVVIDANKMGGPAAQRRFSGLLRIRFPEEVIAMVRTNQP HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCEEEEECHHHHHHHHHCCCC AGLCQFLLWPSPDRGFVCDLPGQPVDSQMLQIRRIDVEAMRLDLAAQLTPDMLASAHPTL HHHHHHEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC PQPDTTTTLPTPSTGMTFLVFRDEYLKRNAGFWKADQVRRRQDQFEAFLELMGDLQLAKI CCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH DRATIRTFSDEIAKIPDERHNVRRKFKRPDADYQELIELAEKHNLPRLTVSAQQRMLDGI HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHH SEIFAWAERETLITSNPAKGLGGELKKRSGSTKVKAHEQRDPLSDVDLQKIFSAVWFTTG HHHHHHHHCCEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC SGLKTAKGKFYTYRPHYFWLPLLAIYHGGRLNELSQLYLDDIKTSESGVPYLDFNLLGED CCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCC KMDVDEADRSAATDKSLKTVSSQRVVPMHKHLVDLGFREYVSALRDAGYKRLFPELRFNK CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHCHHHHHHC AKGYGKAAGSWFNERFLGKELGIPRNGRKTFHSMRHNFATALGATATPTTIKSDLMGHSR CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC GLALVEARYDKGGDLLERKKVIDAIQYALPPIAHFNIKDGIQAIKDALKTKESHKKTKRY CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCC PS CC >Mature Secondary Structure SGAQYLYRRDSGTYYIRLCVPARLKVAVGKGEIHRTTGCRDYRLAKIVAAELAAHWHRA CCCCEEEEECCCCEEEEEEECCEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHH IQALERMDISKIKAGSIKLLGDGYIPLTDAAEALGTTPSSLAQRLTIRQAHFFVEANDWL HHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHEEEEEECCCC GWAVEDIHESLEHIQDELGQVEVVIDANKMGGPAAQRRFSGLLRIRFPEEVIAMVRTNQP HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCEEEEECHHHHHHHHHCCCC AGLCQFLLWPSPDRGFVCDLPGQPVDSQMLQIRRIDVEAMRLDLAAQLTPDMLASAHPTL HHHHHHEECCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCC PQPDTTTTLPTPSTGMTFLVFRDEYLKRNAGFWKADQVRRRQDQFEAFLELMGDLQLAKI CCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH DRATIRTFSDEIAKIPDERHNVRRKFKRPDADYQELIELAEKHNLPRLTVSAQQRMLDGI HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHH SEIFAWAERETLITSNPAKGLGGELKKRSGSTKVKAHEQRDPLSDVDLQKIFSAVWFTTG HHHHHHHHCCEEEECCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC SGLKTAKGKFYTYRPHYFWLPLLAIYHGGRLNELSQLYLDDIKTSESGVPYLDFNLLGED CCCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCC KMDVDEADRSAATDKSLKTVSSQRVVPMHKHLVDLGFREYVSALRDAGYKRLFPELRFNK CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHCHHHHHHC AKGYGKAAGSWFNERFLGKELGIPRNGRKTFHSMRHNFATALGATATPTTIKSDLMGHSR CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC GLALVEARYDKGGDLLERKKVIDAIQYALPPIAHFNIKDGIQAIKDALKTKESHKKTKRY CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCC PS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA