| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787763
Identifier: 91787763
GI number: 91787763
Start: 1946241
End: 1947929
Strand: Reverse
Name: 91787763
Synonym: Bpro_1884
Alternate gene names: NA
Gene position: 1947929-1946241 (Counterclockwise)
Preceding gene: 91787764
Following gene: 91787762
Centisome position: 37.46
GC content: 67.79
Gene sequence:
>1689_bases ATGATTCTTGATGCCAACAGCATCCAGAACGGCGCCGAGCTGCAGGCCGATGTCTGCGTGGTGGGCGGAGGCCCGGCGGG CATTGCGCTCACGCTGTCCCTGTCGGAGCGCGGCCTCTCGGTGCTGATGCTGGAGTCCGGGCAACTGCAGGAAGACGCCA AAACCCAGTCGCTCTATGAGGGCGAGGTCGCCGATGAGCGATTGCACAGCCCGCCCGACAAGTACCGGCAGCGGCGCCTG GGCGGGTCGTCGGCGATCTGGGGTGGCCGTTGCATGCCGTTTGATCCCATCGACTTTGAAACCCGCAACCATGTGCCGAA CAGCGGATGGCCGCTGTCGTATGACGACCTGCTGCCCTATTACCCGCAGGCCAACGCGCTGGCAGAAGCCGGGCGTTTCA GCTATGACGCCGGCGAAGCCTTCGGCCCGCAGCTGGAGCCGCTGATCCGCGGCTTCGACAGCCCGCGCGTGCGCACCTGC GGGCTCGAGCGGTTTTCCTGCCCGACCCACTTCGGCACCCGTTACGCCAAGCGGCTGCAACTGGCGCCTGGCGTGCAGGT CCTGCTCGGTGCCAATTGCACCGCCGTCCGGCTGCAGGCCGACGGGCAGGCGGTGCGCACGCTGGAAGTTGCCACCCTGG CCGGCAAGCGCTTTACCGTCACGCCGCGCGCGGCGGTGCTGGCCGCCGGCGGCCTTGAAACCGCGCGCCTGCTGCTGGCC TCGCGTGACGTCACACCGGCAGGCGTGGGCAACTTCCACGACGTGGTCGGCCGCTATTACATGTGCCACATCGCGGGCAA CGTCGGCACCCTGACCGTCCAGGGCCCGACCCGCAACGTGCGGCACGGCTACGAGGTGGCGCCGGAGGGTATTTACTGCC GCCGGCGGCTGTCGGTGACAGCGGCCGAGCAGCGGCGGCTGGGGCTGGCGAACGCGGTCGCGCGCCTGCACTTTCCGCGC ATCACCGACCCGGCACACCGCAACGGCGTGCTGTCCGGCTTGTTTCTGGCACGCCGGCTGATCAGCTATGAATACGGCAA ACGGCTGAACGACGGCAACGCCACCTCGCCGGGGCACTATGCCCGCCATCTCTTCAATGTGGTGGCCGACCCGATGGACA CCACGGCATTCCTGGGTCACTGGCTGCTGCGACGCTCGCTCGCCGAGCGCAAATTCCCGTCGGTGATCCTGCGCAACCGC ACCAACCGCTTCAGCCTGGAGGTGCACGGCGAGCAGATGCCGCAAGCCGGCAGCCGCGTGACGCTGACCGACAAGCTCGA TGCCCTCGGCATGCCGCAGCTGCGCGTGGACTGGCGCTACAGCCAGGCGGACATTGATTCGGTCCGCGGCACACTGGACG TGCTGGTGCAGGAGTTTGCGCAAAGCGGAGTTGCCAGCTTTGACTACAACCGCGACACACTGGAGGAAGACATCATGCGC TTCGGCGCCTATGGCGGTCACCACATCGGTACGGCACGCATGGGCCTCGATCCACGCACCAGCGTGGTCGACGCCGATTG CCGGGTGCATTCGGTACGCAACCTGTTCGTGGCGGGCAGCGCCGTGTTCCCCACCTCCAGCCAGGCCAACCCCACGCTCA CCCTGATTGCGATGTCGCTCAGGCTGGGCGAGCACCTGGCGCGGCGCCTGCACACAGAGCATGCCGCGCCCGTGGGAGCG TGCGCATGA
Upstream 100 bases:
>100_bases TTTTTGCCAGCGTGGCACGGGTTCACCAGCGCCACTTCGGCATTGCCGGCCAGCCTCGGAACACCCACATCAGCAGCGCC TCTGCGCAGGAACGGTCGCC
Downstream 100 bases:
>100_bases AAATACTGAGAGTCCTGGTGTTGGGCGGGTCCGGCCACATCGGAACGCAGCTCGTTGAGGCGCTGAAAAGCACCCCGTGG GCGGTACCGGTCAGCGCCTC
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: GMC Oxidoreductase; FAD Dependent Oxidoreductase; Oxidoreductase; GMC Family Oxidoreductase; Choline Dehydrogenase; GMC Oxidoreductase Family; Flavoprotein Related Choline Dehydrogenase; Choline Dehydrogenase-Like Flavoprotein; Glucose Dehydrogenase; Glucose-Methanol-Choline Family Oxidoreductase; Dehydrogenase Protein; NAD-Dependent Epimerase/Dehydratase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Dehydrogenase; Oxidoreductase-Like Protein; Dehydrogenase Subunit-Like Protein; 2-Keto-Gluconate Dehydrogenase; Oxidoreductase GMC Family; Gluconate Dehydrogenase; FAD-Dependent Oxidoreductase; Glucoside 3-Dehydrogenase; Glucose Dehydrogenase Subunit Alpha; Capsular Polysaccharide Biosynthesis Oxidoreductase; Dehydrogenase Subunit I; Solbitol Dehydrogenase Large Subunit
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYEGEVADERLHSPPDKYRQRRL GGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPYYPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTC GLERFSCPTHFGTRYAKRLQLAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVTAAEQRRLGLANAVARLHFPR ITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHYARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNR TNRFSLEVHGEQMPQAGSRVTLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSLRLGEHLARRLHTEHAAPVGA CA
Sequences:
>Translated_562_residues MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYEGEVADERLHSPPDKYRQRRL GGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPYYPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTC GLERFSCPTHFGTRYAKRLQLAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVTAAEQRRLGLANAVARLHFPR ITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHYARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNR TNRFSLEVHGEQMPQAGSRVTLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSLRLGEHLARRLHTEHAAPVGA CA >Mature_562_residues MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYEGEVADERLHSPPDKYRQRRL GGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPYYPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTC GLERFSCPTHFGTRYAKRLQLAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVTAAEQRRLGLANAVARLHFPR ITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHYARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNR TNRFSLEVHGEQMPQAGSRVTLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSLRLGEHLARRLHTEHAAPVGA CA
Specific function: Unknown
COG id: COG2303
COG function: function code E; Choline dehydrogenase and related flavoproteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61393; Mature: 61393
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYE CEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHC GEVADERLHSPPDKYRQRRLGGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPY CCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC YPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTCGLERFSCPTHFGTRYAKRLQ CCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHC LAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA CCCCCEEEECCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCHHEEECCCHHHHHHHHH SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVT CCCCCCCCCCCHHHHHHCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEHCCCEE AAEQRRLGLANAVARLHFPRITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHY HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH ARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNRTNRFSLEVHGEQMPQAGSRV HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCEE TLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR EEECCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSL HCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHEEEECCEECCCCCCCCCEEEEHHHHH RLGEHLARRLHTEHAAPVGACA HHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MILDANSIQNGAELQADVCVVGGGPAGIALTLSLSERGLSVLMLESGQLQEDAKTQSLYE CEECCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHC GEVADERLHSPPDKYRQRRLGGSSAIWGGRCMPFDPIDFETRNHVPNSGWPLSYDDLLPY CCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCC YPQANALAEAGRFSYDAGEAFGPQLEPLIRGFDSPRVRTCGLERFSCPTHFGTRYAKRLQ CCCHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHHHHHHHC LAPGVQVLLGANCTAVRLQADGQAVRTLEVATLAGKRFTVTPRAAVLAAGGLETARLLLA CCCCCEEEECCCCEEEEEECCCCEEEEEEEEEECCCEEEECCCHHEEECCCHHHHHHHHH SRDVTPAGVGNFHDVVGRYYMCHIAGNVGTLTVQGPTRNVRHGYEVAPEGIYCRRRLSVT CCCCCCCCCCCHHHHHHCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEHCCCEE AAEQRRLGLANAVARLHFPRITDPAHRNGVLSGLFLARRLISYEYGKRLNDGNATSPGHY HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH ARHLFNVVADPMDTTAFLGHWLLRRSLAERKFPSVILRNRTNRFSLEVHGEQMPQAGSRV HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCCCCCCEE TLTDKLDALGMPQLRVDWRYSQADIDSVRGTLDVLVQEFAQSGVASFDYNRDTLEEDIMR EEECCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH FGAYGGHHIGTARMGLDPRTSVVDADCRVHSVRNLFVAGSAVFPTSSQANPTLTLIAMSL HCCCCCCCCCEEECCCCCCCCEEECCHHHHHHHHEEEECCEECCCCCCCCCEEEEHHHHH RLGEHLARRLHTEHAAPVGACA HHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA