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The map label for this gene is abgR [H]

Identifier: 91787647

GI number: 91787647

Start: 1824611

End: 1825558

Strand: Reverse

Name: abgR [H]

Synonym: Bpro_1765

Alternate gene names: 91787647

Gene position: 1825558-1824611 (Counterclockwise)

Preceding gene: 91787650

Following gene: 91787639

Centisome position: 35.11

GC content: 68.67

Gene sequence:

>948_bases
ATGCGCCTTCAAAGAATCGAACAATTCATCGCCGTCGTCGACGCCGGTAGCATCCGTGGCGCAGCGCGCCGGCTCGGCGT
GTCCCAACCTGCGCTCACCCGCGCCTTGCAGCAACTCGAGGAGGAGCTGGGCGTGCAGCTGATGCAGCGCAGCGTTCGCG
GCGCTTCGCTCACCGCTGCGGGCAGCGCGTTCCTTGCGCGCGCGCGTGTGGCCGAGGCGGAGTTGCGCATGGGTGCCGAC
GAAGCCAGGCGCAGCAGCGACGATGGCGGCGGCCTCGTAACGGTGGGTGTCTCGCCGTCGGCTGCGAGCCTGCTGCTGCC
GGAATTCGTGACGGCCTTGCGGCAGCAGCGCCCGAACACCAGAATCCGCCTGCTCGAGTTGAGCCCGGGGACCTTGCCGC
CTTTGGTGCGCGAAGCGGCGCTGGACATGGCGGTGGCGCATCACGCGCGCTCGCATCTCGATGCCGGCCTGCGCTTTCGG
CCCTTGTTCGAGATTCAGATGCGAGTGGTCGTCCGTCCGGGCCATCCGCTGGCCAGCGCGCGCAGCCTGAACGAGCTCGT
GCAGTGCGCGTGGCTGTCAATGGCCGCACCGGGACTTCCCGGCGACCTCATCAGGCAGTCGTTTCTAGCGGAGGGCTTGC
CCGCCCCAGTGCCGGCTGTGCATTGCGGGTCTCACTCCGTTGCGCTTGACCTCATCGCTGCAAGCGACATGGTGGGCCTG
TTGCCTCCCGCACTGCTGCGTTCATGCATGGCGGCCGGACGGCTGGTCGAGCTGCCGATGGCGAAGCCACTGGTGCCCCT
GGATGTGGGCCTCTACACGCGCGCCGACAGCCCAACGGCGCCGGCGGCCAAGGCGGCCGCCCAAATCATCGTGGGTATCG
CGCGCCGACTCGCCTTGTCAGGTGAGCTGCGAAGTACGGACCCCATCGTGGGCTCACCGCCGGCTTAG

Upstream 100 bases:

>100_bases
GATGCATTCGATGAGCCCGATTTGCGCACATCGGCCGAGTTGGGGGAAGATGCATGATGCGGCATGTCGATGCCGACCGT
GCATCACCCTGGGGAATGCC

Downstream 100 bases:

>100_bases
CGTCGTCGCGCAAGCCGTTGACAGGCGTCCGGGAAAGCGGATTGAGCGGAAAGCTGCCTTCCGCCTATTGCAGCGGCCGA
AATCGGACACCGAATATTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRLQRIEQFIAVVDAGSIRGAARRLGVSQPALTRALQQLEEELGVQLMQRSVRGASLTAAGSAFLARARVAEAELRMGAD
EARRSSDDGGGLVTVGVSPSAASLLLPEFVTALRQQRPNTRIRLLELSPGTLPPLVREAALDMAVAHHARSHLDAGLRFR
PLFEIQMRVVVRPGHPLASARSLNELVQCAWLSMAAPGLPGDLIRQSFLAEGLPAPVPAVHCGSHSVALDLIAASDMVGL
LPPALLRSCMAAGRLVELPMAKPLVPLDVGLYTRADSPTAPAAKAAAQIIVGIARRLALSGELRSTDPIVGSPPA

Sequences:

>Translated_315_residues
MRLQRIEQFIAVVDAGSIRGAARRLGVSQPALTRALQQLEEELGVQLMQRSVRGASLTAAGSAFLARARVAEAELRMGAD
EARRSSDDGGGLVTVGVSPSAASLLLPEFVTALRQQRPNTRIRLLELSPGTLPPLVREAALDMAVAHHARSHLDAGLRFR
PLFEIQMRVVVRPGHPLASARSLNELVQCAWLSMAAPGLPGDLIRQSFLAEGLPAPVPAVHCGSHSVALDLIAASDMVGL
LPPALLRSCMAAGRLVELPMAKPLVPLDVGLYTRADSPTAPAAKAAAQIIVGIARRLALSGELRSTDPIVGSPPA
>Mature_315_residues
MRLQRIEQFIAVVDAGSIRGAARRLGVSQPALTRALQQLEEELGVQLMQRSVRGASLTAAGSAFLARARVAEAELRMGAD
EARRSSDDGGGLVTVGVSPSAASLLLPEFVTALRQQRPNTRIRLLELSPGTLPPLVREAALDMAVAHHARSHLDAGLRFR
PLFEIQMRVVVRPGHPLASARSLNELVQCAWLSMAAPGLPGDLIRQSFLAEGLPAPVPAVHCGSHSVALDLIAASDMVGL
LPPALLRSCMAAGRLVELPMAKPLVPLDVGLYTRADSPTAPAAKAAAQIIVGIARRLALSGELRSTDPIVGSPPA

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=283, Percent_Identity=31.095406360424, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI87081904, Length=302, Percent_Identity=26.8211920529801, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI145693105, Length=300, Percent_Identity=27, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789506, Length=302, Percent_Identity=22.1854304635762, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=29.9295774647887, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788887, Length=183, Percent_Identity=31.1475409836066, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786401, Length=266, Percent_Identity=26.6917293233083, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790399, Length=182, Percent_Identity=26.9230769230769, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788297, Length=154, Percent_Identity=34.4155844155844, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787530, Length=193, Percent_Identity=25.9067357512953, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=25.8503401360544, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787806, Length=284, Percent_Identity=27.112676056338, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1788296, Length=203, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33153; Mature: 33153

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLQRIEQFIAVVDAGSIRGAARRLGVSQPALTRALQQLEEELGVQLMQRSVRGASLTAA
CCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
GSAFLARARVAEAELRMGADEARRSSDDGGGLVTVGVSPSAASLLLPEFVTALRQQRPNT
HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCC
RIRLLELSPGTLPPLVREAALDMAVAHHARSHLDAGLRFRPLFEIQMRVVVRPGHPLASA
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHEEEEEEEEECCCCCHHH
RSLNELVQCAWLSMAAPGLPGDLIRQSFLAEGLPAPVPAVHCGSHSVALDLIAASDMVGL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHH
LPPALLRSCMAAGRLVELPMAKPLVPLDVGLYTRADSPTAPAAKAAAQIIVGIARRLALS
CCHHHHHHHHHCCCEEECCCCCCCCEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
GELRSTDPIVGSPPA
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLQRIEQFIAVVDAGSIRGAARRLGVSQPALTRALQQLEEELGVQLMQRSVRGASLTAA
CCHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
GSAFLARARVAEAELRMGADEARRSSDDGGGLVTVGVSPSAASLLLPEFVTALRQQRPNT
HHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCC
RIRLLELSPGTLPPLVREAALDMAVAHHARSHLDAGLRFRPLFEIQMRVVVRPGHPLASA
EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHEEEEEEEEECCCCCHHH
RSLNELVQCAWLSMAAPGLPGDLIRQSFLAEGLPAPVPAVHCGSHSVALDLIAASDMVGL
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHH
LPPALLRSCMAAGRLVELPMAKPLVPLDVGLYTRADSPTAPAAKAAAQIIVGIARRLALS
CCHHHHHHHHHCCCEEECCCCCCCCEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
GELRSTDPIVGSPPA
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]