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The map label for this gene is kdgR [H]

Identifier: 91787620

GI number: 91787620

Start: 1795751

End: 1796827

Strand: Reverse

Name: kdgR [H]

Synonym: Bpro_1738

Alternate gene names: 91787620

Gene position: 1796827-1795751 (Counterclockwise)

Preceding gene: 91787621

Following gene: 91787619

Centisome position: 34.55

GC content: 68.43

Gene sequence:

>1077_bases
ATGCCCGGCAAGAAAATTCTGCCTCCTCTTTCCGCCACCCAGCCTTCGGCACGCGCCACGATTGCCGATGTCGCGCGCGA
AGCCGGCGTCTCCAAAGCCACGGTGTCACGATTTCTGAACCACCGCGAACGGCTGCTCACGCCGGACATTGCGGCCCGCG
TTGAAGTCGCCATTGCCGCGCTGAACTTCAGCCCCAGCCCCATGGCCCAGGCGCTGAAGCGGGGCCGTTCCCGCCTGATC
GGCCTGGTGGTGGCCGATGTCAGCAACCCGTTTTCCGTCGCCGTGTTGCGGGGCGCCGAGAAGGCCTGCCGGGAGGCCGG
TTACCTGCTCATGCTGTTCAACCTCGGCAATGACAGCCAGCGCGAGAGCGAAGCCATCGAGGCCCTGACCGCCTACCAGG
TGGAAGGGCTGATTCTGAACACGCTGGGGCGCGATGCCGGCGCCGCCGCCGAAGCCGCGCGCCACGGCAAGCCGGTGGTG
CTGGTGGACCGGCGCCACCAGGACATGCAGGCCGACTTCGTGTCGCTCGACAACGCCGGCGCCGTGCGGCTGGGCGCCCG
ACACCTGGTGGAGGCGGGCTACCGCGAGCTGCTTTTTGTCTCGGAGCCGCTGAAGGATGTGAGCTCACGCATGGAGCGCG
AAAGCGCGTTTCGCAACTTTATCGGCGAGTCTGCGGCGGATACGCCAGGGCTGGCAGGCCACACGTTTGAAAGCGCGGCA
GACGACACGCAAGGGCTGGACCAGGCCCTGCGTGACTTGCGCCAGCGCGCCGGTGACCGCCTGCCCGGCGTGGTCTCCAG
CAACGCCGTGGTGACCCTGCGGGTGGTGGCGGCCATGGCGCGGCTGGGCTGGCGCTTTGGCTCCGAGGTGGGCCTGGTGG
GTTTTGACGAGACCGAGTGGTCGCCTTATGTGGGCCCAGGCCTGAGCACCATCGCCCAGCCGACCGACGAACTGGGCCAG
CTGGCTGCCGGCTGCCTGATTGAGCGCCTCAAAGGCCTGGACCTGCCGCCGCGCCAGATTTTGCTGTCCGGCCGGCTGGT
GCCGCGCGGCTCGTCGGTGCCAGACCGGACTGCTTAG

Upstream 100 bases:

>100_bases
CGCATCGCTCGTCAGATCGCAGGCCCACTCGATCGCCTTGAATGAATCGACTGGTGCTACCATTCGCTGAAACTGGTTTC
AAAACCCCAGCACCCAACCC

Downstream 100 bases:

>100_bases
CCGCCAGATTGACGGGAAGAATGCCCGGGAACCCTGGAGATTCCCGGTTGCGGCGCAAGTCACGCTTCTTTTATAATTCA
CTGAAACCGATTTCACAATC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: Kdg operon repressor [H]

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MPGKKILPPLSATQPSARATIADVAREAGVSKATVSRFLNHRERLLTPDIAARVEVAIAALNFSPSPMAQALKRGRSRLI
GLVVADVSNPFSVAVLRGAEKACREAGYLLMLFNLGNDSQRESEAIEALTAYQVEGLILNTLGRDAGAAAEAARHGKPVV
LVDRRHQDMQADFVSLDNAGAVRLGARHLVEAGYRELLFVSEPLKDVSSRMERESAFRNFIGESAADTPGLAGHTFESAA
DDTQGLDQALRDLRQRAGDRLPGVVSSNAVVTLRVVAAMARLGWRFGSEVGLVGFDETEWSPYVGPGLSTIAQPTDELGQ
LAAGCLIERLKGLDLPPRQILLSGRLVPRGSSVPDRTA

Sequences:

>Translated_358_residues
MPGKKILPPLSATQPSARATIADVAREAGVSKATVSRFLNHRERLLTPDIAARVEVAIAALNFSPSPMAQALKRGRSRLI
GLVVADVSNPFSVAVLRGAEKACREAGYLLMLFNLGNDSQRESEAIEALTAYQVEGLILNTLGRDAGAAAEAARHGKPVV
LVDRRHQDMQADFVSLDNAGAVRLGARHLVEAGYRELLFVSEPLKDVSSRMERESAFRNFIGESAADTPGLAGHTFESAA
DDTQGLDQALRDLRQRAGDRLPGVVSSNAVVTLRVVAAMARLGWRFGSEVGLVGFDETEWSPYVGPGLSTIAQPTDELGQ
LAAGCLIERLKGLDLPPRQILLSGRLVPRGSSVPDRTA
>Mature_357_residues
PGKKILPPLSATQPSARATIADVAREAGVSKATVSRFLNHRERLLTPDIAARVEVAIAALNFSPSPMAQALKRGRSRLIG
LVVADVSNPFSVAVLRGAEKACREAGYLLMLFNLGNDSQRESEAIEALTAYQVEGLILNTLGRDAGAAAEAARHGKPVVL
VDRRHQDMQADFVSLDNAGAVRLGARHLVEAGYRELLFVSEPLKDVSSRMERESAFRNFIGESAADTPGLAGHTFESAAD
DTQGLDQALRDLRQRAGDRLPGVVSSNAVVTLRVVAAMARLGWRFGSEVGLVGFDETEWSPYVGPGLSTIAQPTDELGQL
AAGCLIERLKGLDLPPRQILLSGRLVPRGSSVPDRTA

Specific function: Transcriptional repressor of the kdg operon for pectin utilization [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=335, Percent_Identity=30.4477611940298, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1790369, Length=351, Percent_Identity=26.7806267806268, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787948, Length=340, Percent_Identity=28.2352941176471, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1789202, Length=302, Percent_Identity=29.1390728476821, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI48994940, Length=340, Percent_Identity=25.5882352941176, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788474, Length=330, Percent_Identity=26.969696969697, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1789068, Length=343, Percent_Identity=25.6559766763848, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786540, Length=348, Percent_Identity=27.0114942528736, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787580, Length=326, Percent_Identity=25.7668711656442, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1787906, Length=190, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790689, Length=220, Percent_Identity=26.8181818181818, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790715, Length=323, Percent_Identity=21.671826625387, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786268, Length=226, Percent_Identity=26.1061946902655, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38245; Mature: 38114

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGKKILPPLSATQPSARATIADVAREAGVSKATVSRFLNHRERLLTPDIAARVEVAIAA
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEE
LNFSPSPMAQALKRGRSRLIGLVVADVSNPFSVAVLRGAEKACREAGYLLMLFNLGNDSQ
ECCCCCHHHHHHHHHHHHEEEHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
RESEAIEALTAYQVEGLILNTLGRDAGAAAEAARHGKPVVLVDRRHQDMQADFVSLDNAG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCC
AVRLGARHLVEAGYRELLFVSEPLKDVSSRMERESAFRNFIGESAADTPGLAGHTFESAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHC
DDTQGLDQALRDLRQRAGDRLPGVVSSNAVVTLRVVAAMARLGWRFGSEVGLVGFDETEW
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC
SPYVGPGLSTIAQPTDELGQLAAGCLIERLKGLDLPPRQILLSGRLVPRGSSVPDRTA
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PGKKILPPLSATQPSARATIADVAREAGVSKATVSRFLNHRERLLTPDIAARVEVAIAA
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHEE
LNFSPSPMAQALKRGRSRLIGLVVADVSNPFSVAVLRGAEKACREAGYLLMLFNLGNDSQ
ECCCCCHHHHHHHHHHHHEEEHEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
RESEAIEALTAYQVEGLILNTLGRDAGAAAEAARHGKPVVLVDRRHQDMQADFVSLDNAG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCC
AVRLGARHLVEAGYRELLFVSEPLKDVSSRMERESAFRNFIGESAADTPGLAGHTFESAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHC
DDTQGLDQALRDLRQRAGDRLPGVVSSNAVVTLRVVAAMARLGWRFGSEVGLVGFDETEW
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC
SPYVGPGLSTIAQPTDELGQLAAGCLIERLKGLDLPPRQILLSGRLVPRGSSVPDRTA
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]