| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is rsgA [H]
Identifier: 91787579
GI number: 91787579
Start: 1746914
End: 1747888
Strand: Reverse
Name: rsgA [H]
Synonym: Bpro_1697
Alternate gene names: 91787579
Gene position: 1747888-1746914 (Counterclockwise)
Preceding gene: 91787580
Following gene: 91787571
Centisome position: 33.61
GC content: 62.26
Gene sequence:
>975_bases TTGAGCAAACCGGCCCGCGCCTGGGCGGTGCCGGTCTCGGGCACCCGGCCAGGTCTGGTGGTGGCCGGTTTTGGCCGCCA TGTGCTGGTGGAAACCGAGTCGGGCGAACGCGTGATTTGCCACCCGCGCGGCAAGAAAAGCCAGGCCGTGGTCGGTGACC GCATACGCTGGCTGCCCTCACAGGATGAAGGCACCATCGAGAAAATCGAGGAGCGCAGCAACCTGTTTTACCGGCAGGAC GAGATGCGCACCAAGTCGTTTGCCGCCAACCTGGACCAGGTGCTCATCCTGATCGCGGCTGAGCCCGAATTCTCGGAAAG CCAGCTGACCCGGGCCCTGATCGCGGCTGAAGCCGAGCGCATCACCCCCATCATTGCCTTGAACAAAAGCGACTTGACCG AGCCGTTCCAGCGCGCATGGACCAAACTGGCGCCTTACCGCGCCATGGGCTACCAGATGCTGCCGCTGGCCATCAAGCCC AAGGCAGCCCAGCCCGAAGCCGACACCGACATCGACGGAACGCAGTCCGCCAGGCTCATCGAACTGCTGCAGGGCAAAAA GACGTTGGTGCTCGGGCCCTCCGGAGCCGGGAAAAGCAGCCTCACCAATCTTCTGGTGCCGCAGGCCCGGGTGCTGACGG CCGAGATTTCACAAGCGCTGAACTCAGGCAAGCACACCACCACCAGCACCACGCTGTACTGGGTGGACAGCGCCAGGACC ACGGCACTCATCGACTCGCCGGGTTTTCAGGAGTTCGGCCTGCACCACATCGACCCGATGCAGCTGGCCGGCTACATGCC CGACCTCAAGGCGCACGCACAGAACTGCAAGTTCTACAACTGCACGCATCTTCATGAGCCCGGCTGCGGCGTGATTTCAG AAGTGAATTCGGCAGATAAGCCCAGCAGCATCAGCCCAAACCGCTATCGTTTGTATGGCGAATTGTTTGCGGAGTTGTCG CAGACCCGATACTGA
Upstream 100 bases:
>100_bases TGAGTTACAGCAAATGCACGGTCCGCTTCAACACGCACGATGTAAACGGCATTTCCGCCAGCGACTTCTTCTGCGCGTCC AAGGTTGACGCCCTGCTCAC
Downstream 100 bases:
>100_bases AAACCCGACGTCAGGCGGCAAGCAGTACACGCAAAGCGCCTACCAGTGCCTCACATTGCAACGGAGTGCCTACGCTGATA CGGAGGTATTGCTCAATGCG
Product: GTPase EngC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSKPARAWAVPVSGTRPGLVVAGFGRHVLVETESGERVICHPRGKKSQAVVGDRIRWLPSQDEGTIEKIEERSNLFYRQD EMRTKSFAANLDQVLILIAAEPEFSESQLTRALIAAEAERITPIIALNKSDLTEPFQRAWTKLAPYRAMGYQMLPLAIKP KAAQPEADTDIDGTQSARLIELLQGKKTLVLGPSGAGKSSLTNLLVPQARVLTAEISQALNSGKHTTTSTTLYWVDSART TALIDSPGFQEFGLHHIDPMQLAGYMPDLKAHAQNCKFYNCTHLHEPGCGVISEVNSADKPSSISPNRYRLYGELFAELS QTRY
Sequences:
>Translated_324_residues MSKPARAWAVPVSGTRPGLVVAGFGRHVLVETESGERVICHPRGKKSQAVVGDRIRWLPSQDEGTIEKIEERSNLFYRQD EMRTKSFAANLDQVLILIAAEPEFSESQLTRALIAAEAERITPIIALNKSDLTEPFQRAWTKLAPYRAMGYQMLPLAIKP KAAQPEADTDIDGTQSARLIELLQGKKTLVLGPSGAGKSSLTNLLVPQARVLTAEISQALNSGKHTTTSTTLYWVDSART TALIDSPGFQEFGLHHIDPMQLAGYMPDLKAHAQNCKFYNCTHLHEPGCGVISEVNSADKPSSISPNRYRLYGELFAELS QTRY >Mature_323_residues SKPARAWAVPVSGTRPGLVVAGFGRHVLVETESGERVICHPRGKKSQAVVGDRIRWLPSQDEGTIEKIEERSNLFYRQDE MRTKSFAANLDQVLILIAAEPEFSESQLTRALIAAEAERITPIIALNKSDLTEPFQRAWTKLAPYRAMGYQMLPLAIKPK AAQPEADTDIDGTQSARLIELLQGKKTLVLGPSGAGKSSLTNLLVPQARVLTAEISQALNSGKHTTTSTTLYWVDSARTT ALIDSPGFQEFGLHHIDPMQLAGYMPDLKAHAQNCKFYNCTHLHEPGCGVISEVNSADKPSSISPNRYRLYGELFAELSQ TRY
Specific function: May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover [H]
COG id: COG1162
COG function: function code R; Predicted GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 engC GTPase domain [H]
Homologues:
Organism=Escherichia coli, GI87082381, Length=317, Percent_Identity=33.1230283911672, Blast_Score=158, Evalue=4e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010914 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004881 [H]
Pfam domain/function: PF03193 DUF258 [H]
EC number: NA
Molecular weight: Translated: 35686; Mature: 35555
Theoretical pI: Translated: 8.00; Mature: 8.00
Prosite motif: PS50936 ENGC_GTPASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPARAWAVPVSGTRPGLVVAGFGRHVLVETESGERVICHPRGKKSQAVVGDRIRWLPS CCCCCCEEEEECCCCCCCEEEEECCCEEEEEECCCCEEEECCCCCCCCCHHCCCEEECCC QDEGTIEKIEERSNLFYRQDEMRTKSFAANLDQVLILIAAEPEFSESQLTRALIAAEAER CCCCHHHHHHHHHCCEEEHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH ITPIIALNKSDLTEPFQRAWTKLAPYRAMGYQMLPLAIKPKAAQPEADTDIDGTQSARLI CCEEEEECCHHCHHHHHHHHHHHCCHHHCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHH ELLQGKKTLVLGPSGAGKSSLTNLLVPQARVLTAEISQALNSGKHTTTSTTLYWVDSART HHHCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCE TALIDSPGFQEFGLHHIDPMQLAGYMPDLKAHAQNCKFYNCTHLHEPGCGVISEVNSADK EEEECCCCCHHCCCCCCCHHHHHCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCC PSSISPNRYRLYGELFAELSQTRY CCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SKPARAWAVPVSGTRPGLVVAGFGRHVLVETESGERVICHPRGKKSQAVVGDRIRWLPS CCCCCEEEEECCCCCCCEEEEECCCEEEEEECCCCEEEECCCCCCCCCHHCCCEEECCC QDEGTIEKIEERSNLFYRQDEMRTKSFAANLDQVLILIAAEPEFSESQLTRALIAAEAER CCCCHHHHHHHHHCCEEEHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH ITPIIALNKSDLTEPFQRAWTKLAPYRAMGYQMLPLAIKPKAAQPEADTDIDGTQSARLI CCEEEEECCHHCHHHHHHHHHHHCCHHHCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHH ELLQGKKTLVLGPSGAGKSSLTNLLVPQARVLTAEISQALNSGKHTTTSTTLYWVDSART HHHCCCEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCE TALIDSPGFQEFGLHHIDPMQLAGYMPDLKAHAQNCKFYNCTHLHEPGCGVISEVNSADK EEEECCCCCHHCCCCCCCHHHHHCCCCCHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCC PSSISPNRYRLYGELFAELSQTRY CCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP [C]
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA