Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91787561

Identifier: 91787561

GI number: 91787561

Start: 1731851

End: 1733053

Strand: Direct

Name: 91787561

Synonym: Bpro_1679

Alternate gene names: NA

Gene position: 1731851-1733053 (Clockwise)

Preceding gene: 91787560

Following gene: 91787562

Centisome position: 33.3

GC content: 65.92

Gene sequence:

>1203_bases
ATGAAAACAATAGCATTTGCCTGGCGTTACCTGTGGTCCAGGCCGCTGGCCGCCACACTGAACCTGCTGCTCTTGAGCCT
GGGGCTGGCCTCCGTCACCTTCCTGCTGCTGGTCAGCCACCAGATCAACCGGGCCTTTGAGCGCGACCTCGCCGGCATTG
ATGTGGTGGTGGGCGCCAAGGGCAGCCCCATGCAGCTGATTCTGTCGGGCGTGTTTCACCTGGATGTGCCGACGGGCAAT
GTGCCGCTGGCCGCTGTCAGGGCGCTGGAGAGCCATCCGCAGGTGGCCAAAATCATTCCCATCAGCCTGGGGGACAGCTT
TCGCGGCTTCCGTGTTGTGGGCACCACGCCCGCCTACATTTCGCACTATGACGCCCGGCTGGCGCAGGGGGCGCTGTGGT
CACGGCCCATGCAGGCAGTGATTGGCGCGCAGGTCGCCCGGCAAACCGGCCTGAAAGTAGGTGACACCTTTGCGGGAACC
CATGGCCTCGGTGGCGGTGGTGAGGTGCACGGACAAACCCCCTACACCGTGGCCGGGGTGCTGGCGCCCGGCGGCACGGT
GCTGGACCGCCTGGTGTTGACCGCGACCGAGTCGGTGTGGAAGGTGCACGAAACCGACACGGCACTCGATGAAGAAGACC
AGAAGATTCTCGAAGAGGAGCGCGAGGTCACGCTGGCACTGATCCAGTACAAGACGCCGCTGGCGGCGGTGACTTTTCCG
CGCTACATCAACAGCAGCACCGACATGCAGGCGGCGGCCCCGGCGCTCGAAATCACGCGCCTGCTCAACATGGTGGGCGT
GGGCACCGATGTATTGCGCGCCCTGGCCGGCGTGCTGCTGCTCACCGCGGCCCTGAGCGTGTTCATTGCCTTGTGGGGTG
CCGTGCGCGAGCGCCGCGCCGACCTGGCCCTGCTGCGCATGCTGGGTGCGCCGCCGCGCAAGGTGGCCGGTCTGCTGCTG
TGTGAGGCCCTGTGGCTGGCCATGCTCGCCACGCTGCTGGGTGTGCTGGCCGGGCAGGGCCTGACGGCGCTGATCGGCTG
GACGCTGCAACTGGAAAAATCGGTGCTGATCGGTGCGCTGTCGTGGCCGGTCGAGTTGATCAGTGTGCCGGTACTGGCGC
TGGGTGTGGCGCTAGCGTCCGCGTTGCTGCCCGCCTGGGAGGCCTACCGGGTCAGTGTGTTTGAACTTCTTCAACCAAAG
TGA

Upstream 100 bases:

>100_bases
AGGGCGCCACGCTGGTGATTGCCACGCACGATGGCCGGGTGGGCAATTTTTTCAAGGATGAACAAGGCCTGCAGTCCCTG
AGAACCGGGACTGGCAGGCC

Downstream 100 bases:

>100_bases
AACTTCTCATGAAAAACTTTACTGTCCTTCAAAAACCCCTTTCAAAATCACTTTCCATCCTTGCCACTGTTGCGCTGGGT
GCCATGCTGTCAGTGGCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: Peptide ABC Transporter Permease; Efflux ABC Transporter Permease Protein; ABC Efflux Transporter Permease Protein; ABC Transporter Permease; ABC-Type Transport System Permease Component; Peptide ABC Transporter Permease Component; Transmembrane Protein; Transmembrane Transporter Component; ABC Transporter Membrane Protein; Permease Component Protein; ABC Transporter Permease Protein; ABC Transport System Permease Protein; Antimicrobial Peptide ABC Transporter Permease; ABC Transporter Transmembrane Permease; ABC-Type Transport System Permease

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAKGSPMQLILSGVFHLDVPTGN
VPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYISHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGT
HGLGGGGEVHGQTPYTVAGVLAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP
RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRADLALLRMLGAPPRKVAGLLL
CEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGALSWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK

Sequences:

>Translated_400_residues
MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAKGSPMQLILSGVFHLDVPTGN
VPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYISHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGT
HGLGGGGEVHGQTPYTVAGVLAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP
RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRADLALLRMLGAPPRKVAGLLL
CEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGALSWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK
>Mature_400_residues
MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAKGSPMQLILSGVFHLDVPTGN
VPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYISHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGT
HGLGGGGEVHGQTPYTVAGVLAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP
RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRADLALLRMLGAPPRKVAGLLL
CEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGALSWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42614; Mature: 42614

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAK
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
GSPMQLILSGVFHLDVPTGNVPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYI
CCCHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCHHHH
SHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGTHGLGGGGEVHGQTPYTVAGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP
ECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHH
RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRA
HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLALLRMLGAPPRKVAGLLLCEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGAL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEHHHHHHHHH
SWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAK
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
GSPMQLILSGVFHLDVPTGNVPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYI
CCCHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCHHHH
SHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGTHGLGGGGEVHGQTPYTVAGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
LAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP
ECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHH
RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRA
HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLALLRMLGAPPRKVAGLLLCEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGAL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEHHHHHHHHH
SWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA