| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787561
Identifier: 91787561
GI number: 91787561
Start: 1731851
End: 1733053
Strand: Direct
Name: 91787561
Synonym: Bpro_1679
Alternate gene names: NA
Gene position: 1731851-1733053 (Clockwise)
Preceding gene: 91787560
Following gene: 91787562
Centisome position: 33.3
GC content: 65.92
Gene sequence:
>1203_bases ATGAAAACAATAGCATTTGCCTGGCGTTACCTGTGGTCCAGGCCGCTGGCCGCCACACTGAACCTGCTGCTCTTGAGCCT GGGGCTGGCCTCCGTCACCTTCCTGCTGCTGGTCAGCCACCAGATCAACCGGGCCTTTGAGCGCGACCTCGCCGGCATTG ATGTGGTGGTGGGCGCCAAGGGCAGCCCCATGCAGCTGATTCTGTCGGGCGTGTTTCACCTGGATGTGCCGACGGGCAAT GTGCCGCTGGCCGCTGTCAGGGCGCTGGAGAGCCATCCGCAGGTGGCCAAAATCATTCCCATCAGCCTGGGGGACAGCTT TCGCGGCTTCCGTGTTGTGGGCACCACGCCCGCCTACATTTCGCACTATGACGCCCGGCTGGCGCAGGGGGCGCTGTGGT CACGGCCCATGCAGGCAGTGATTGGCGCGCAGGTCGCCCGGCAAACCGGCCTGAAAGTAGGTGACACCTTTGCGGGAACC CATGGCCTCGGTGGCGGTGGTGAGGTGCACGGACAAACCCCCTACACCGTGGCCGGGGTGCTGGCGCCCGGCGGCACGGT GCTGGACCGCCTGGTGTTGACCGCGACCGAGTCGGTGTGGAAGGTGCACGAAACCGACACGGCACTCGATGAAGAAGACC AGAAGATTCTCGAAGAGGAGCGCGAGGTCACGCTGGCACTGATCCAGTACAAGACGCCGCTGGCGGCGGTGACTTTTCCG CGCTACATCAACAGCAGCACCGACATGCAGGCGGCGGCCCCGGCGCTCGAAATCACGCGCCTGCTCAACATGGTGGGCGT GGGCACCGATGTATTGCGCGCCCTGGCCGGCGTGCTGCTGCTCACCGCGGCCCTGAGCGTGTTCATTGCCTTGTGGGGTG CCGTGCGCGAGCGCCGCGCCGACCTGGCCCTGCTGCGCATGCTGGGTGCGCCGCCGCGCAAGGTGGCCGGTCTGCTGCTG TGTGAGGCCCTGTGGCTGGCCATGCTCGCCACGCTGCTGGGTGTGCTGGCCGGGCAGGGCCTGACGGCGCTGATCGGCTG GACGCTGCAACTGGAAAAATCGGTGCTGATCGGTGCGCTGTCGTGGCCGGTCGAGTTGATCAGTGTGCCGGTACTGGCGC TGGGTGTGGCGCTAGCGTCCGCGTTGCTGCCCGCCTGGGAGGCCTACCGGGTCAGTGTGTTTGAACTTCTTCAACCAAAG TGA
Upstream 100 bases:
>100_bases AGGGCGCCACGCTGGTGATTGCCACGCACGATGGCCGGGTGGGCAATTTTTTCAAGGATGAACAAGGCCTGCAGTCCCTG AGAACCGGGACTGGCAGGCC
Downstream 100 bases:
>100_bases AACTTCTCATGAAAAACTTTACTGTCCTTCAAAAACCCCTTTCAAAATCACTTTCCATCCTTGCCACTGTTGCGCTGGGT GCCATGCTGTCAGTGGCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptide ABC Transporter Permease; Efflux ABC Transporter Permease Protein; ABC Efflux Transporter Permease Protein; ABC Transporter Permease; ABC-Type Transport System Permease Component; Peptide ABC Transporter Permease Component; Transmembrane Protein; Transmembrane Transporter Component; ABC Transporter Membrane Protein; Permease Component Protein; ABC Transporter Permease Protein; ABC Transport System Permease Protein; Antimicrobial Peptide ABC Transporter Permease; ABC Transporter Transmembrane Permease; ABC-Type Transport System Permease
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAKGSPMQLILSGVFHLDVPTGN VPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYISHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGT HGLGGGGEVHGQTPYTVAGVLAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRADLALLRMLGAPPRKVAGLLL CEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGALSWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK
Sequences:
>Translated_400_residues MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAKGSPMQLILSGVFHLDVPTGN VPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYISHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGT HGLGGGGEVHGQTPYTVAGVLAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRADLALLRMLGAPPRKVAGLLL CEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGALSWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK >Mature_400_residues MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAKGSPMQLILSGVFHLDVPTGN VPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYISHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGT HGLGGGGEVHGQTPYTVAGVLAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRADLALLRMLGAPPRKVAGLLL CEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGALSWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42614; Mature: 42614
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAK CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC GSPMQLILSGVFHLDVPTGNVPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYI CCCHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCHHHH SHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGTHGLGGGGEVHGQTPYTVAGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE LAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP ECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHH RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRA HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLALLRMLGAPPRKVAGLLLCEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGAL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEHHHHHHHHH SWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKTIAFAWRYLWSRPLAATLNLLLLSLGLASVTFLLLVSHQINRAFERDLAGIDVVVGAK CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC GSPMQLILSGVFHLDVPTGNVPLAAVRALESHPQVAKIIPISLGDSFRGFRVVGTTPAYI CCCHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCHHHH SHYDARLAQGALWSRPMQAVIGAQVARQTGLKVGDTFAGTHGLGGGGEVHGQTPYTVAGV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE LAPGGTVLDRLVLTATESVWKVHETDTALDEEDQKILEEEREVTLALIQYKTPLAAVTFP ECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCHHHHHHH RYINSSTDMQAAAPALEITRLLNMVGVGTDVLRALAGVLLLTAALSVFIALWGAVRERRA HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DLALLRMLGAPPRKVAGLLLCEALWLAMLATLLGVLAGQGLTALIGWTLQLEKSVLIGAL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEHHHHHHHHH SWPVELISVPVLALGVALASALLPAWEAYRVSVFELLQPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA