BacMap

Definition	Polaromonas sp. JS666 chromosome, complete genome.
Accession	NC_007948
Length	5,200,264

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The map label for this gene is ytrE [H]

Identifier: 91787560

GI number: 91787560

Start: 1731198

End: 1731854

Strand: Direct

Name: ytrE [H]

Synonym: Bpro_1678

Alternate gene names: 91787560

Gene position: 1731198-1731854 (Clockwise)

Preceding gene: 91787559

Following gene: 91787561

Centisome position: 33.29

GC content: 69.1

Gene sequence:

>657_bases
GTGATCAGTACCCGCCAACTCGCCTACCGCTACCCCGGCGGTCCGGAATTACGGTTTGACGATGTGGACGTGGCGCAGGG
TGGCGTGCTGTTGCTTCGCGGCGCGTCGGGTTCGGGCAAGTCGACCTGGCTGGCGCTGGCGGCTGGTTTGCTGAGCCCCA
GCGAGGGCAACATGACTGTGGCGGGGCAGTCCCTCCAGGCGCTGGGGAAGGCTGCCGGCGATGCGTGGCGCGCGCAGACC
ATCGGTTTCCTGCCGCAACGCCTTCACTTGAGCGCCGCACTGACGGTCCACGGCAACCTGGCCCTGGCGCAATGGGCGGC
CGGCCAGCCGCTTCAGGAGGGCCGCATCACCGAAGCACTGGCAGCGCTGGATGTGCAGGCGCTGGCCGACCGCAGGCCGG
CGCAGCTTTCGGGCGGGCAGGCCCAGCGGGTGGCGCTGGCCCGGGCGGTGCTGCTCAAACCGTCGGTGATCCTGGCCGAC
GAACCCACCGCGAGCCTGGACGATGACGCTGCGTGCGCATCGCTGGCCCTGTTGCGGAGCACGGCGCAGCAGCAGGGCGC
CACGCTGGTGATTGCCACGCACGATGGCCGGGTGGGCAATTTTTTCAAGGATGAACAAGGCCTGCAGTCCCTGAGAACCG
GGACTGGCAGGCCATGA

Upstream 100 bases:

>100_bases
CTTTGGGCTACCAGGGCACGAGCATGGACTTTGCGGTGCGGGGCGTGTGTGCCGACTGTGTGGCCGCTACTGCTACTGCT
GATTCGCGGGGCATGACCGC

Downstream 100 bases:

>100_bases
AAACAATAGCATTTGCCTGGCGTTACCTGTGGTCCAGGCCGCTGGCCGCCACACTGAACCTGCTGCTCTTGAGCCTGGGG
CTGGCCTCCGTCACCTTCCT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MISTRQLAYRYPGGPELRFDDVDVAQGGVLLLRGASGSGKSTWLALAAGLLSPSEGNMTVAGQSLQALGKAAGDAWRAQT
IGFLPQRLHLSAALTVHGNLALAQWAAGQPLQEGRITEALAALDVQALADRRPAQLSGGQAQRVALARAVLLKPSVILAD
EPTASLDDDAACASLALLRSTAQQQGATLVIATHDGRVGNFFKDEQGLQSLRTGTGRP

Sequences:

>Translated_218_residues
MISTRQLAYRYPGGPELRFDDVDVAQGGVLLLRGASGSGKSTWLALAAGLLSPSEGNMTVAGQSLQALGKAAGDAWRAQT
IGFLPQRLHLSAALTVHGNLALAQWAAGQPLQEGRITEALAALDVQALADRRPAQLSGGQAQRVALARAVLLKPSVILAD
EPTASLDDDAACASLALLRSTAQQQGATLVIATHDGRVGNFFKDEQGLQSLRTGTGRP
>Mature_218_residues
MISTRQLAYRYPGGPELRFDDVDVAQGGVLLLRGASGSGKSTWLALAAGLLSPSEGNMTVAGQSLQALGKAAGDAWRAQT
IGFLPQRLHLSAALTVHGNLALAQWAAGQPLQEGRITEALAALDVQALADRRPAQLSGGQAQRVALARAVLLKPSVILAD
EPTASLDDDAACASLALLRSTAQQQGATLVIATHDGRVGNFFKDEQGLQSLRTGTGRP

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27262624, Length=174, Percent_Identity=35.0574712643678, Blast_Score=84, Evalue=7e-17,
Organism=Homo sapiens, GI27262626, Length=174, Percent_Identity=35.0574712643678, Blast_Score=84, Evalue=7e-17,
Organism=Homo sapiens, GI255708477, Length=221, Percent_Identity=28.9592760180996, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI148612844, Length=221, Percent_Identity=28.9592760180996, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI153792144, Length=147, Percent_Identity=35.3741496598639, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI215820660, Length=164, Percent_Identity=32.3170731707317, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI20143975, Length=164, Percent_Identity=32.3170731707317, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI42741659, Length=201, Percent_Identity=30.8457711442786, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27477115, Length=147, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI9961252, Length=203, Percent_Identity=29.064039408867, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI9961250, Length=188, Percent_Identity=30.3191489361702, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4505771, Length=188, Percent_Identity=30.3191489361702, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI46592978, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592898, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27436953, Length=160, Percent_Identity=31.875, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI46592964, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI46592915, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI46592956, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI150417984, Length=201, Percent_Identity=30.3482587064677, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI46592971, Length=208, Percent_Identity=29.8076923076923, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI42490749, Length=177, Percent_Identity=31.0734463276836, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI171184400, Length=181, Percent_Identity=29.2817679558011, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI156105685, Length=221, Percent_Identity=25.7918552036199, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI87081834, Length=174, Percent_Identity=38.5057471264368, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787105, Length=204, Percent_Identity=35.7843137254902, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786703, Length=174, Percent_Identity=40.2298850574713, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87081709, Length=197, Percent_Identity=32.994923857868, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1786398, Length=167, Percent_Identity=38.9221556886228, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1789873, Length=199, Percent_Identity=38.1909547738693, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787089, Length=197, Percent_Identity=35.0253807106599, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790544, Length=211, Percent_Identity=33.6492890995261, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787029, Length=198, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788761, Length=182, Percent_Identity=35.1648351648352, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI87081791, Length=199, Percent_Identity=33.6683417085427, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788225, Length=202, Percent_Identity=34.6534653465347, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787370, Length=177, Percent_Identity=33.8983050847458, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789672, Length=199, Percent_Identity=32.1608040201005, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082267, Length=177, Percent_Identity=33.8983050847458, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1786253, Length=196, Percent_Identity=32.1428571428571, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790467, Length=176, Percent_Identity=31.8181818181818, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786872, Length=182, Percent_Identity=35.1648351648352, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789891, Length=181, Percent_Identity=34.8066298342541, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1786563, Length=219, Percent_Identity=31.9634703196347, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788450, Length=179, Percent_Identity=34.6368715083799, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786319, Length=196, Percent_Identity=29.5918367346939, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789032, Length=206, Percent_Identity=29.126213592233, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1786345, Length=216, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788506, Length=183, Percent_Identity=36.6120218579235, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI48994943, Length=197, Percent_Identity=29.9492385786802, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788644, Length=169, Percent_Identity=32.5443786982249, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787712, Length=176, Percent_Identity=31.25, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787500, Length=189, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787758, Length=197, Percent_Identity=31.9796954314721, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1789962, Length=199, Percent_Identity=29.6482412060301, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081782, Length=173, Percent_Identity=29.4797687861272, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788165, Length=175, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787143, Length=201, Percent_Identity=30.8457711442786, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789890, Length=190, Percent_Identity=33.1578947368421, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786803, Length=181, Percent_Identity=30.3867403314917, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786698, Length=173, Percent_Identity=30.635838150289, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994997, Length=216, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788897, Length=199, Percent_Identity=33.1658291457286, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790534, Length=215, Percent_Identity=32.5581395348837, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787164, Length=178, Percent_Identity=33.7078651685393, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790739, Length=212, Percent_Identity=28.7735849056604, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994883, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789593, Length=202, Percent_Identity=28.7128712871287, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI48995001, Length=203, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789963, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787112, Length=203, Percent_Identity=29.5566502463054, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788210, Length=230, Percent_Identity=27.8260869565217, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1790190, Length=214, Percent_Identity=26.6355140186916, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789586, Length=182, Percent_Identity=30.2197802197802, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787759, Length=214, Percent_Identity=28.5046728971963, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788053, Length=171, Percent_Identity=31.5789473684211, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=231, Percent_Identity=29.8701298701299, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=203, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=203, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=203, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=200, Percent_Identity=29, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=209, Percent_Identity=28.7081339712919, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=207, Percent_Identity=28.5024154589372, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=217, Percent_Identity=30.4147465437788, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=174, Percent_Identity=31.6091954022989, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=171, Percent_Identity=28.0701754385965, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=191, Percent_Identity=25.6544502617801, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115532730, Length=178, Percent_Identity=27.5280898876405, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71984940, Length=185, Percent_Identity=29.1891891891892, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6320296, Length=204, Percent_Identity=25.4901960784314, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85726357, Length=203, Percent_Identity=30.5418719211823, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281363262, Length=224, Percent_Identity=31.6964285714286, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24653245, Length=224, Percent_Identity=31.6964285714286, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24659289, Length=224, Percent_Identity=27.2321428571429, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24641565, Length=215, Percent_Identity=31.1627906976744, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI17136662, Length=220, Percent_Identity=25.9090909090909, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 22625; Mature: 22625

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTRQLAYRYPGGPELRFDDVDVAQGGVLLLRGASGSGKSTWLALAAGLLSPSEGNMTV
CCCCCCEEEECCCCCCEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEE
AGQSLQALGKAAGDAWRAQTIGFLPQRLHLSAALTVHGNLALAQWAAGQPLQEGRITEAL
ECHHHHHHHHHCCCHHHHHHHHCCCHHHEEEEEEEEECCEEEEHHCCCCCCCCCHHHHHH
AALDVQALADRRPAQLSGGQAQRVALARAVLLKPSVILADEPTASLDDDAACASLALLRS
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
TAQQQGATLVIATHDGRVGNFFKDEQGLQSLRTGTGRP
HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MISTRQLAYRYPGGPELRFDDVDVAQGGVLLLRGASGSGKSTWLALAAGLLSPSEGNMTV
CCCCCCEEEECCCCCCEEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEE
AGQSLQALGKAAGDAWRAQTIGFLPQRLHLSAALTVHGNLALAQWAAGQPLQEGRITEAL
ECHHHHHHHHHCCCHHHHHHHHCCCHHHEEEEEEEEECCEEEEHHCCCCCCCCCHHHHHH
AALDVQALADRRPAQLSGGQAQRVALARAVLLKPSVILADEPTASLDDDAACASLALLRS
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHH
TAQQQGATLVIATHDGRVGNFFKDEQGLQSLRTGTGRP
HHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]