| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ada [H]
Identifier: 91787520
GI number: 91787520
Start: 1692391
End: 1693905
Strand: Reverse
Name: ada [H]
Synonym: Bpro_1638
Alternate gene names: 91787520
Gene position: 1693905-1692391 (Counterclockwise)
Preceding gene: 91787533
Following gene: 91787519
Centisome position: 32.57
GC content: 67.85
Gene sequence:
>1515_bases ATGACCAGCGCCCAGCCCCCCCTCGCCGACAACGACTGCTACCTCGCCCTGAAGGCGCGGGACGCACGCTTTGACGGCAG TTTTTTTACCGGTGTTACATCCACCGGCATCTACTGCCGGCCGGTCTGCAGCGTCAAAACACCCAAGCGCGAAAACTGCC GGTTTTTCAGCCATGCGGCACAGGCCGAAAGCGCCGGCTTTCGTCCCTGCCTGCGCTGCCGGCCCGAACTGGCGCCGCAC TCGGTGGTGTGGTCCATCCAGGACGCGTCCTACATCCTGGCCCACCAGGCGGCCCGCCTGCTGGACGAGCCTGAGCTGTC CGACGAAGCCCCTTCGGTCGAAAAACTGGCGGCGCGGCTGGGCGTGAGCGACCGCCACGTGCGGCGGATTTTCGAGGCGC AGTTTGGCGTGTCGCCCATGCAGTACCTGCAGACGCGCCGGCTGCACACCGCCAAGCAGTTGCTGGCCGATACCAGCCTG CCCATCACGCAGGTTGCGCTGATCAGCGGCTTTGCCAGCGTGCGGCGCTTCAATGCCGCCTTTGTCGAGCACTACAAGCT AAACCCCACGCAGCTGCGGCGCCAGGGGGTGAGCGATGCCGGCCACATCAACGGCACCGCGCCGGGCATCACCATCCGGC TGGGCTACCGGCCCCCTTACGACGTGGCGGCCATGCTCGGATTTTTTAGCAAACGCACCATCAGCGCTATTGAATTCGTG GCTGCCGATGCGCAACACCCCTCGATAGGCAGGACATTTCGTGTGGAGTCGGGCGGCAAGGTACATGCCGGCTGGCTGCT GGCGGCCTTTGATGAAACCCGTTCCCGGCTGGTGCTCAACGTCAGCGACTCGCTGCGCGAGGTGCTGCCGCTGGTGATTC GCCGGGTGCGCGCCACGTTTGACCTCGACGCCGACCCTGCGGCCATCAACAGCGTGCTGCATGCCGGCTTTCCGCAGGGC GATGGCCTGCGCGTGCCCGGTGCGCTCGATGGCTATGAGCTGGCCGTGCGCGCGGTGCTGGGCCAGCAGATCACCGTGGC CGCGGCGCGCACGCTGGCGCAGCGCATGGTCGACCGCTTTGGCGAGCCGGTGCAAACCCCCTGGCCGCAGCTGACCCGGC TGTTCCCGGCGCCTGCCATGCTGGCCGCCGCCAGCGGCGATGCGCTGGGGCAGCTCGGCATAGTCAGGCAGCGCCAGGCC GCCATTGTGGGCATTGCGCAAGCGGTGGCCGACAAACGCCTGCAGCTGCACAGCGGCGCCGATGTGCATGCCACGCTGGA GGCGCTGAAGGCCTTGCCCGGCATCGGCGACTGGACCGCGCAGTACATCGCCATGCGCGCCCTGCGCTGGCCCGATGCGT TTCCGGCGGGCGATGTGGCGCTGCACAAGGCGATGGGCGTGCAGGGACTGAAAAATCCGGCCCGGGAAGCCGAGTTGGCC TCGCATGCGTGGAAGCCCTGGCGCAGCTATGCCGTGATCCGCGCGTGGAGCGGCACGCTGGAGCGGCCCGGTTGA
Upstream 100 bases:
>100_bases ATTGTAGGGTGGCGCCCTCCCTCGGGACGGGCCCCGGCGGGCTTGAGGGATATGTCCGAAAACGGCTAGTCAAAAGCTGC GCCCGGCGTAACATGCCCCC
Downstream 100 bases:
>100_bases CGGGGGCTGAGGAGATTCATGCGCCTAGGGAATGAATACGCCCTCTCGATTTCATTGGACGGGAAAGCGCCTTCGGGCGA CCATCACCGGCGAATGATCG
Product: transcriptional regulator Ada/DNA-O6-methylguanine--protein-cysteine S-methyltransferase/DNA-3-methyladenine glycosylase II
Products: NA
Alternate protein names: Regulatory protein of adaptative response; Methylated-DNA--protein-cysteine methyltransferase; O-6-methylguanine-DNA alkyltransferase [H]
Number of amino acids: Translated: 504; Mature: 503
Protein sequence:
>504_residues MTSAQPPLADNDCYLALKARDARFDGSFFTGVTSTGIYCRPVCSVKTPKRENCRFFSHAAQAESAGFRPCLRCRPELAPH SVVWSIQDASYILAHQAARLLDEPELSDEAPSVEKLAARLGVSDRHVRRIFEAQFGVSPMQYLQTRRLHTAKQLLADTSL PITQVALISGFASVRRFNAAFVEHYKLNPTQLRRQGVSDAGHINGTAPGITIRLGYRPPYDVAAMLGFFSKRTISAIEFV AADAQHPSIGRTFRVESGGKVHAGWLLAAFDETRSRLVLNVSDSLREVLPLVIRRVRATFDLDADPAAINSVLHAGFPQG DGLRVPGALDGYELAVRAVLGQQITVAAARTLAQRMVDRFGEPVQTPWPQLTRLFPAPAMLAAASGDALGQLGIVRQRQA AIVGIAQAVADKRLQLHSGADVHATLEALKALPGIGDWTAQYIAMRALRWPDAFPAGDVALHKAMGVQGLKNPAREAELA SHAWKPWRSYAVIRAWSGTLERPG
Sequences:
>Translated_504_residues MTSAQPPLADNDCYLALKARDARFDGSFFTGVTSTGIYCRPVCSVKTPKRENCRFFSHAAQAESAGFRPCLRCRPELAPH SVVWSIQDASYILAHQAARLLDEPELSDEAPSVEKLAARLGVSDRHVRRIFEAQFGVSPMQYLQTRRLHTAKQLLADTSL PITQVALISGFASVRRFNAAFVEHYKLNPTQLRRQGVSDAGHINGTAPGITIRLGYRPPYDVAAMLGFFSKRTISAIEFV AADAQHPSIGRTFRVESGGKVHAGWLLAAFDETRSRLVLNVSDSLREVLPLVIRRVRATFDLDADPAAINSVLHAGFPQG DGLRVPGALDGYELAVRAVLGQQITVAAARTLAQRMVDRFGEPVQTPWPQLTRLFPAPAMLAAASGDALGQLGIVRQRQA AIVGIAQAVADKRLQLHSGADVHATLEALKALPGIGDWTAQYIAMRALRWPDAFPAGDVALHKAMGVQGLKNPAREAELA SHAWKPWRSYAVIRAWSGTLERPG >Mature_503_residues TSAQPPLADNDCYLALKARDARFDGSFFTGVTSTGIYCRPVCSVKTPKRENCRFFSHAAQAESAGFRPCLRCRPELAPHS VVWSIQDASYILAHQAARLLDEPELSDEAPSVEKLAARLGVSDRHVRRIFEAQFGVSPMQYLQTRRLHTAKQLLADTSLP ITQVALISGFASVRRFNAAFVEHYKLNPTQLRRQGVSDAGHINGTAPGITIRLGYRPPYDVAAMLGFFSKRTISAIEFVA ADAQHPSIGRTFRVESGGKVHAGWLLAAFDETRSRLVLNVSDSLREVLPLVIRRVRATFDLDADPAAINSVLHAGFPQGD GLRVPGALDGYELAVRAVLGQQITVAAARTLAQRMVDRFGEPVQTPWPQLTRLFPAPAMLAAASGDALGQLGIVRQRQAA IVGIAQAVADKRLQLHSGADVHATLEALKALPGIGDWTAQYIAMRALRWPDAFPAGDVALHKAMGVQGLKNPAREAELAS HAWKPWRSYAVIRAWSGTLERPG
Specific function: The methylated ADA protein acts as a positive regulator of its own synthesis, as well as that of other proteins. The transcription-activating function of the ADA protein resides in its N-terminus [H]
COG id: COG0122
COG function: function code L; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788383, Length=283, Percent_Identity=34.2756183745583, Blast_Score=142, Evalue=7e-35, Organism=Escherichia coli, GI1788542, Length=190, Percent_Identity=32.6315789473684, Blast_Score=93, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004026 - InterPro: IPR010316 - InterPro: IPR011257 - InterPro: IPR003265 - InterPro: IPR003583 - InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR018062 - InterPro: IPR018060 - InterPro: IPR023170 - InterPro: IPR012294 [H]
Pfam domain/function: PF02805 Ada_Zn_binding; PF06029 AlkA_N; PF00730 HhH-GPD [H]
EC number: =2.1.1.63 [H]
Molecular weight: Translated: 54880; Mature: 54749
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSAQPPLADNDCYLALKARDARFDGSFFTGVTSTGIYCRPVCSVKTPKRENCRFFSHAA CCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHH QAESAGFRPCLRCRPELAPHSVVWSIQDASYILAHQAARLLDEPELSDEAPSVEKLAARL HHHCCCCCHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH GVSDRHVRRIFEAQFGVSPMQYLQTRRLHTAKQLLADTSLPITQVALISGFASVRRFNAA CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH FVEHYKLNPTQLRRQGVSDAGHINGTAPGITIRLGYRPPYDVAAMLGFFSKRTISAIEFV HHHHHCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH AADAQHPSIGRTFRVESGGKVHAGWLLAAFDETRSRLVLNVSDSLREVLPLVIRRVRATF HCCCCCCCCCCEEEECCCCEEECCCEEEEEHHCCCEEEEECHHHHHHHHHHHHHHHHHHC DLDADPAAINSVLHAGFPQGDGLRVPGALDGYELAVRAVLGQQITVAAARTLAQRMVDRF CCCCCHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC GEPVQTPWPQLTRLFPAPAMLAAASGDALGQLGIVRQRQAAIVGIAQAVADKRLQLHSGA CCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DVHATLEALKALPGIGDWTAQYIAMRALRWPDAFPAGDVALHKAMGVQGLKNPAREAELA CHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHCCCHHHHHHHH SHAWKPWRSYAVIRAWSGTLERPG HHCCCHHHHEEEEEECCCCCCCCC >Mature Secondary Structure TSAQPPLADNDCYLALKARDARFDGSFFTGVTSTGIYCRPVCSVKTPKRENCRFFSHAA CCCCCCCCCCCEEEEEEECCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHH QAESAGFRPCLRCRPELAPHSVVWSIQDASYILAHQAARLLDEPELSDEAPSVEKLAARL HHHCCCCCHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH GVSDRHVRRIFEAQFGVSPMQYLQTRRLHTAKQLLADTSLPITQVALISGFASVRRFNAA CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH FVEHYKLNPTQLRRQGVSDAGHINGTAPGITIRLGYRPPYDVAAMLGFFSKRTISAIEFV HHHHHCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH AADAQHPSIGRTFRVESGGKVHAGWLLAAFDETRSRLVLNVSDSLREVLPLVIRRVRATF HCCCCCCCCCCEEEECCCCEEECCCEEEEEHHCCCEEEEECHHHHHHHHHHHHHHHHHHC DLDADPAAINSVLHAGFPQGDGLRVPGALDGYELAVRAVLGQQITVAAARTLAQRMVDRF CCCCCHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC GEPVQTPWPQLTRLFPAPAMLAAASGDALGQLGIVRQRQAAIVGIAQAVADKRLQLHSGA CCCCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DVHATLEALKALPGIGDWTAQYIAMRALRWPDAFPAGDVALHKAMGVQGLKNPAREAELA CHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHCCCHHHHHHHH SHAWKPWRSYAVIRAWSGTLERPG HHCCCHHHHEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]