| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91787380
Identifier: 91787380
GI number: 91787380
Start: 1540866
End: 1542026
Strand: Direct
Name: 91787380
Synonym: Bpro_1486
Alternate gene names: NA
Gene position: 1540866-1542026 (Clockwise)
Preceding gene: 91787379
Following gene: 91787381
Centisome position: 29.63
GC content: 61.76
Gene sequence:
>1161_bases ATGACTGACCTGAAAAAACGTTCCTTGCTCCAACTGGCTGCGACATCCGCAGTGGCTGCCATGGCCCTGGCAGGTTGCGG CAAGAAGGATGAGCCTGTACCCGCACCTGCGCCCGCCCCCGCGGCTTCGGCGCCGGCTCCAGCCAAGGCCGAGCCGCTGA AAATAGCGTTTGCCTATGTCGGGCCGGTGGGCGACGGCGGCTGGTCTTTTGCGCACGACAACGGCCGCAAGGCGGTCGAA AAGGAATTTGGCGACAAGGTCGTCACCAAGTTTGTGGAAAGCGTGCCCGAATCGGCCGACGCCGAGCGCGTGATCCGCGA CCTGGCCGGTGAAGGCAACAAGCTGATTTTCGGCACCACCTTCGGCTACATGGAATCCATGCTCAAGGTGGCGGCCGACA ACAAGGGCATCAAGTTCGAGCATGCCACCGGCTACAAAACCGCCGAGAACATGCGCACTTATGACAGCCGAACCTACGAA GGCGCCTACATGGCCGGCGTGATCGCCGGCAAGATGACCAAATCCAACACGCTGGGCGTGGTCGGCTCGGTGCCGATTCC CGAAGTGGTGCGCAACATCAACAGCTTCACGCTGGGCGCACAGAGCTCCAACCCCAAGATCAAGACCAAGGTGGTCTGGG TCAATGAATGGTTCAACCCCGGCAAGGAAACCGAGGCCGCGACGTCCCTGATCAATGGCGGCGCAGACGTGCTGTTCCAG AACACCGATTCGCCCGCCGTGCTCAAGACCGCCCAGGAAAAGGGCAAGCGCGCTTTCGGCTGGGATTCCGACATGACGGC CTACGGCCCCAAGGCCCACCTCGGTTCCGCCGTCATCAACTGGGGTCCGTACTACATCAAGGCCACCCGCGACGCGCTGG AAGGCAAGTGGCAGACTTCGCCGGACAAGATCTGGTGGGGCGTGAAGGAAGGCGCGATCGATATGGTGTCCATCGCCGAG GACGTGCCCGCCGAAACCAAAAAGCGCATCGACGAAATCAAGGCCGGCCTCAAGGACGGCAGCTTTGCCATCTGGAAGGG CCCGATCATGGACAACACCGGCAAGGAATTGCTGGGCAAGGACGTGGTGGCCGACGACAAGTTCCTGGGTGGCCTGAAGA CCTACGTCAAGGGCGTGGAAGGCAAGGTTCCCGGCAACTGA
Upstream 100 bases:
>100_bases CTCCATTGGCAAACCGTTTTACCCTGGGTCCTGATTTTTCGGACTCATTTCCGGGCTCATAATGGCCTTTTTTTGCAAAC CCGTCGCTACAGGAGACGAC
Downstream 100 bases:
>100_bases GTCTTCACTCCCTCTCCCCTCGGAGAGAGCAGGGGTGAGGGCCACTCCTTCTCCCTCTCCCTCTCCCTCTGGGAGAGGGT TGGGGTGAGGGCCGCAGCGC
Product: basic membrane lipoprotein
Products: NA
Alternate protein names: Bmp Family Protein; Basic Membrane Protein; Lipoprotein; Bmp Family Membrane Protein; ABC Transporter Periplasmic/Surface Lipoprotein; ABC Transporter; Lipoprotein Periplasmic Protein; Basic Membrane Protein Family Protein; ABC Transporter Periplasmic Protein Surface Lipoprotein; Basic Membrane Lipoprotein Family; Twin-Arginine Translocation Pathway Signal; Outer Membrane Lipoprotein; Tat Pathway Signal Sequence/Basic Membrane Protein; Surface Lipoprotein; Basic Membrane Protein A-Like Protein; Signal Peptide Protein; ABC Transporter Periplasmic Protein; ABC-Type Transport Periplasmic Component; Med/BMP Family Lipoprotein
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MTDLKKRSLLQLAATSAVAAMALAGCGKKDEPVPAPAPAPAASAPAPAKAEPLKIAFAYVGPVGDGGWSFAHDNGRKAVE KEFGDKVVTKFVESVPESADAERVIRDLAGEGNKLIFGTTFGYMESMLKVAADNKGIKFEHATGYKTAENMRTYDSRTYE GAYMAGVIAGKMTKSNTLGVVGSVPIPEVVRNINSFTLGAQSSNPKIKTKVVWVNEWFNPGKETEAATSLINGGADVLFQ NTDSPAVLKTAQEKGKRAFGWDSDMTAYGPKAHLGSAVINWGPYYIKATRDALEGKWQTSPDKIWWGVKEGAIDMVSIAE DVPAETKKRIDEIKAGLKDGSFAIWKGPIMDNTGKELLGKDVVADDKFLGGLKTYVKGVEGKVPGN
Sequences:
>Translated_386_residues MTDLKKRSLLQLAATSAVAAMALAGCGKKDEPVPAPAPAPAASAPAPAKAEPLKIAFAYVGPVGDGGWSFAHDNGRKAVE KEFGDKVVTKFVESVPESADAERVIRDLAGEGNKLIFGTTFGYMESMLKVAADNKGIKFEHATGYKTAENMRTYDSRTYE GAYMAGVIAGKMTKSNTLGVVGSVPIPEVVRNINSFTLGAQSSNPKIKTKVVWVNEWFNPGKETEAATSLINGGADVLFQ NTDSPAVLKTAQEKGKRAFGWDSDMTAYGPKAHLGSAVINWGPYYIKATRDALEGKWQTSPDKIWWGVKEGAIDMVSIAE DVPAETKKRIDEIKAGLKDGSFAIWKGPIMDNTGKELLGKDVVADDKFLGGLKTYVKGVEGKVPGN >Mature_385_residues TDLKKRSLLQLAATSAVAAMALAGCGKKDEPVPAPAPAPAASAPAPAKAEPLKIAFAYVGPVGDGGWSFAHDNGRKAVEK EFGDKVVTKFVESVPESADAERVIRDLAGEGNKLIFGTTFGYMESMLKVAADNKGIKFEHATGYKTAENMRTYDSRTYEG AYMAGVIAGKMTKSNTLGVVGSVPIPEVVRNINSFTLGAQSSNPKIKTKVVWVNEWFNPGKETEAATSLINGGADVLFQN TDSPAVLKTAQEKGKRAFGWDSDMTAYGPKAHLGSAVINWGPYYIKATRDALEGKWQTSPDKIWWGVKEGAIDMVSIAED VPAETKKRIDEIKAGLKDGSFAIWKGPIMDNTGKELLGKDVVADDKFLGGLKTYVKGVEGKVPGN
Specific function: Unknown
COG id: COG1744
COG function: function code R; Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41196; Mature: 41065
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLKKRSLLQLAATSAVAAMALAGCGKKDEPVPAPAPAPAASAPAPAKAEPLKIAFAYV CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE GPVGDGGWSFAHDNGRKAVEKEFGDKVVTKFVESVPESADAERVIRDLAGEGNKLIFGTT CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECH FGYMESMLKVAADNKGIKFEHATGYKTAENMRTYDSRTYEGAYMAGVIAGKMTKSNTLGV HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCE VGSVPIPEVVRNINSFTLGAQSSNPKIKTKVVWVNEWFNPGKETEAATSLINGGADVLFQ EECCCHHHHHHCCCCEEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEE NTDSPAVLKTAQEKGKRAFGWDSDMTAYGPKAHLGSAVINWGPYYIKATRDALEGKWQTS CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCEEEECCCEEEEECHHHHCCCCCCC PDKIWWGVKEGAIDMVSIAEDVPAETKKRIDEIKAGLKDGSFAIWKGPIMDNTGKELLGK CCCEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCC DVVADDKFLGGLKTYVKGVEGKVPGN CCCCCCHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TDLKKRSLLQLAATSAVAAMALAGCGKKDEPVPAPAPAPAASAPAPAKAEPLKIAFAYV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE GPVGDGGWSFAHDNGRKAVEKEFGDKVVTKFVESVPESADAERVIRDLAGEGNKLIFGTT CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECH FGYMESMLKVAADNKGIKFEHATGYKTAENMRTYDSRTYEGAYMAGVIAGKMTKSNTLGV HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCE VGSVPIPEVVRNINSFTLGAQSSNPKIKTKVVWVNEWFNPGKETEAATSLINGGADVLFQ EECCCHHHHHHCCCCEEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEE NTDSPAVLKTAQEKGKRAFGWDSDMTAYGPKAHLGSAVINWGPYYIKATRDALEGKWQTS CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCEEEECCCEEEEECHHHHCCCCCCC PDKIWWGVKEGAIDMVSIAEDVPAETKKRIDEIKAGLKDGSFAIWKGPIMDNTGKELLGK CCCEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCC DVVADDKFLGGLKTYVKGVEGKVPGN CCCCCCHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA