Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yufP [H]

Identifier: 91787378

GI number: 91787378

Start: 1538767

End: 1539879

Strand: Direct

Name: yufP [H]

Synonym: Bpro_1484

Alternate gene names: 91787378

Gene position: 1538767-1539879 (Clockwise)

Preceding gene: 91787377

Following gene: 91787379

Centisome position: 29.59

GC content: 66.13

Gene sequence:

>1113_bases
ATGCTGCGGCTTGAAGCCAGACCCCAGACTTCGAAGTTCTGGAGCTATGCCTCGCCACTGCTGGCGCTGCTGGTGACCGT
GGTGATCGGCGTGCTGATGTTCACGGCGCTGGGCAAGGACCCGGTCAAGGGTTTGCTGGTGTTCTTCTGGGACCCCATCA
AAACGCCCTATGCGATTGGCGAGCTGATGGTCAAGGCCACGCCGCTGCTGATCATTGCGTTGGGCCTGGCCGTGTGTTTT
CGCTCCAACGTCTGGAACATCGGCGCCGAAGGGCAGTTTGTGATGGGCGCCGTGGTGGCCGGCGGCGTGGCCCTGCTGGC
CGACAAAACCACCGGCAGCTGGATCGTGGCGGCCATTTTGCTGGCCGGGGTGGCCGGCGGCATGGCCTGGGCGGCGCTCA
CCGCCTTGCTGCGGGATCGCTTCAATGCGAACGAAATCCTGGTCAGCCTGATGCTGGTCTATGTTGCCGTGCTGGTGCTC
AGCTACCTGGTGTACGGGCCCTGGAAGGACCCGGCCGGCTACAACTTTCCGCAGACGAAAAATTTCGAGGCCGTCACGCA
AATTCCGCGGCTGGTGCAGGGCTCGCGCGTGAGCATCGGGCTGCTGCTGGCGCTGCTGGGCGCGGCCGCCCTGTGGGTAT
TTTTGTTTCGCACCCGCGCCGGCTTTGCCTTGCAGGTCGGCGGCCTGGCGCCGGCGGCGGCGCGCTATGCCGGCTTTTCC
TCGCGCAAGGCCTTGTGGGTGGCGCTTCTGGCCTCGGGCGGTGCGGCCGGCCTGGCCGGTGCGCTGGAGGTGGCCGGGCC
TATCGGCCAGCTCACGCCTCATGTCCCCGTGGGTTATGGCTTTGCCGCCATCATCGTGGCGTTCGTCGGGCGGCTGCATC
CGGTGGGCATGGTGTTTTCGGCCCTGTTGATGAGCATGTTCTACATTGGTGGCGAGCTGGCCCAGTCGCGGCTGGGGCTG
CCCAAATCGCTCACCGGCGTCTTCCAGGGCCTGCTGCTGTTCACGCTGCTGGCGGCTGACACGCTGATCGCCTACCGCAT
CAAATTCGTCAGGGCTGCGCGCCAGGCGCCCATCCCCGCCATCCCGCAAACAACCCCCCGGGAGGCGCACTGA

Upstream 100 bases:

>100_bases
TCGCCCTCGCTGCGGCGCGCCGACGCGACGGTGGAGCGGGTGGGGCAGTGGATGAGCGGGCTGTGGGATCAAGGTGCCCC
AACGGGAAAAGGAGTTCCAC

Downstream 100 bases:

>100_bases
TGGAATCCTATGCACTGCTGTTTGCCGCCACGCTCAGCGCGGGCACGGTTCTGGCCATTGCCGGGCTGGGCCTGCTGATC
AACGAAAAGGCCGGCATCGT

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MLRLEARPQTSKFWSYASPLLALLVTVVIGVLMFTALGKDPVKGLLVFFWDPIKTPYAIGELMVKATPLLIIALGLAVCF
RSNVWNIGAEGQFVMGAVVAGGVALLADKTTGSWIVAAILLAGVAGGMAWAALTALLRDRFNANEILVSLMLVYVAVLVL
SYLVYGPWKDPAGYNFPQTKNFEAVTQIPRLVQGSRVSIGLLLALLGAAALWVFLFRTRAGFALQVGGLAPAAARYAGFS
SRKALWVALLASGGAAGLAGALEVAGPIGQLTPHVPVGYGFAAIIVAFVGRLHPVGMVFSALLMSMFYIGGELAQSRLGL
PKSLTGVFQGLLLFTLLAADTLIAYRIKFVRAARQAPIPAIPQTTPREAH

Sequences:

>Translated_370_residues
MLRLEARPQTSKFWSYASPLLALLVTVVIGVLMFTALGKDPVKGLLVFFWDPIKTPYAIGELMVKATPLLIIALGLAVCF
RSNVWNIGAEGQFVMGAVVAGGVALLADKTTGSWIVAAILLAGVAGGMAWAALTALLRDRFNANEILVSLMLVYVAVLVL
SYLVYGPWKDPAGYNFPQTKNFEAVTQIPRLVQGSRVSIGLLLALLGAAALWVFLFRTRAGFALQVGGLAPAAARYAGFS
SRKALWVALLASGGAAGLAGALEVAGPIGQLTPHVPVGYGFAAIIVAFVGRLHPVGMVFSALLMSMFYIGGELAQSRLGL
PKSLTGVFQGLLLFTLLAADTLIAYRIKFVRAARQAPIPAIPQTTPREAH
>Mature_370_residues
MLRLEARPQTSKFWSYASPLLALLVTVVIGVLMFTALGKDPVKGLLVFFWDPIKTPYAIGELMVKATPLLIIALGLAVCF
RSNVWNIGAEGQFVMGAVVAGGVALLADKTTGSWIVAAILLAGVAGGMAWAALTALLRDRFNANEILVSLMLVYVAVLVL
SYLVYGPWKDPAGYNFPQTKNFEAVTQIPRLVQGSRVSIGLLLALLGAAALWVFLFRTRAGFALQVGGLAPAAARYAGFS
SRKALWVALLASGGAAGLAGALEVAGPIGQLTPHVPVGYGFAAIIVAFVGRLHPVGMVFSALLMSMFYIGGELAQSRLGL
PKSLTGVFQGLLLFTLLAADTLIAYRIKFVRAARQAPIPAIPQTTPREAH

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4603

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851
- InterPro:   IPR002229 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 39104; Mature: 39104

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLEARPQTSKFWSYASPLLALLVTVVIGVLMFTALGKDPVKGLLVFFWDPIKTPYAIG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCHHHHH
ELMVKATPLLIIALGLAVCFRSNVWNIGAEGQFVMGAVVAGGVALLADKTTGSWIVAAIL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHH
LAGVAGGMAWAALTALLRDRFNANEILVSLMLVYVAVLVLSYLVYGPWKDPAGYNFPQTK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
NFEAVTQIPRLVQGSRVSIGLLLALLGAAALWVFLFRTRAGFALQVGGLAPAAARYAGFS
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCC
SRKALWVALLASGGAAGLAGALEVAGPIGQLTPHVPVGYGFAAIIVAFVGRLHPVGMVFS
CCHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHH
ALLMSMFYIGGELAQSRLGLPKSLTGVFQGLLLFTLLAADTLIAYRIKFVRAARQAPIPA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IPQTTPREAH
CCCCCCCCCC
>Mature Secondary Structure
MLRLEARPQTSKFWSYASPLLALLVTVVIGVLMFTALGKDPVKGLLVFFWDPIKTPYAIG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCHHHHH
ELMVKATPLLIIALGLAVCFRSNVWNIGAEGQFVMGAVVAGGVALLADKTTGSWIVAAIL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHH
LAGVAGGMAWAALTALLRDRFNANEILVSLMLVYVAVLVLSYLVYGPWKDPAGYNFPQTK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
NFEAVTQIPRLVQGSRVSIGLLLALLGAAALWVFLFRTRAGFALQVGGLAPAAARYAGFS
CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCC
SRKALWVALLASGGAAGLAGALEVAGPIGQLTPHVPVGYGFAAIIVAFVGRLHPVGMVFS
CCHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHCHHHHHHH
ALLMSMFYIGGELAQSRLGLPKSLTGVFQGLLLFTLLAADTLIAYRIKFVRAARQAPIPA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
IPQTTPREAH
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]