| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is fliY [H]
Identifier: 91787334
GI number: 91787334
Start: 1488892
End: 1489713
Strand: Reverse
Name: fliY [H]
Synonym: Bpro_1440
Alternate gene names: 91787334
Gene position: 1489713-1488892 (Counterclockwise)
Preceding gene: 91787335
Following gene: 91787333
Centisome position: 28.65
GC content: 59.73
Gene sequence:
>822_bases ATGCCGCCAGGGCTGGCCCATCGCAACCGCGGCATGGATTTTTTTGACATTACAGAACGGAAACTCACCATGAAATTCGC AACGCTTGCAACTTCTCTTGCCGTCACCTTTGCACTATCGCTGTCAGGCCCGGCTTCGGCGCAGACGGTGCTGAAGGTCG GATCCACGCCGACCGGCAGCCCTTTCACTTTCCTGGACACCAAGACCAACACCATTGACGGCGTGATGGTCGACATCGTC AATGCGGTGGCCAAGGAATCGGGCTTCGGGGTACAGATCGAACCCATGCAGTTCTCGGCGCTGATCTCCTCGCTGACTTC CAAGCGCATCGATTTGATCTCGGCGGCGATGTTCATCACGCCGACGCGCCAGGAAGTCGTGGACTTTTCGCTGCCGATCT ACAGCTACGGCGAAGGCGTGGTTGTGTTGAAGCAGGACACGGTCGCCTACCAGAGCTTCGCCGACATGAAAGGCAAGCGG GTCGGGGTGCAGGTCGGCACGGCCTTCGTGGAACCGTTGCAAAAGAGCGGGATGTTTTCAGAGGTCAAGCTCTACGAAAC CACGCCCGACCTGATGCGCGACGCCAACGCCGGGCGCATCGACGCGGGCGTGCTGGACTACCCGATTGCCGCCTTCGCCG TGGCCAAGGGACAGTTTCCCAACCTGCGCATGGTCACCAGCTTCAAGCCGACCATGGTCAACAGCATCGGCATGGCCACC CGAAAAGGCGACACCGAGCTGATGGGCAAGGTGAATGTCGCCGTGACCAAGCTCAAGGCCAACGGCACCATTGACGCCAT CCTGAAAAAGTGGGGCCTGTGA
Upstream 100 bases:
>100_bases TCACGACGGTGCTTTGGGCCATCACCGGCACGCTCAGGTAGCTGGCCGCATTGATCCCATCGACCCCATCGACCCATTTC TCCCACGGCCACCCGGAAAA
Downstream 100 bases:
>100_bases GCCTGACCCCGACCCACTCAGCAATCTACTGAAAAACGAATACCCATGATCCAGTTTCTGCACCATGCACGGGAGTTCAT GCCCATCCTGCTCCAGGGGG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: CBP; Protein fliY; Sulfate starvation-induced protein 7; SSI7 [H]
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MPPGLAHRNRGMDFFDITERKLTMKFATLATSLAVTFALSLSGPASAQTVLKVGSTPTGSPFTFLDTKTNTIDGVMVDIV NAVAKESGFGVQIEPMQFSALISSLTSKRIDLISAAMFITPTRQEVVDFSLPIYSYGEGVVVLKQDTVAYQSFADMKGKR VGVQVGTAFVEPLQKSGMFSEVKLYETTPDLMRDANAGRIDAGVLDYPIAAFAVAKGQFPNLRMVTSFKPTMVNSIGMAT RKGDTELMGKVNVAVTKLKANGTIDAILKKWGL
Sequences:
>Translated_273_residues MPPGLAHRNRGMDFFDITERKLTMKFATLATSLAVTFALSLSGPASAQTVLKVGSTPTGSPFTFLDTKTNTIDGVMVDIV NAVAKESGFGVQIEPMQFSALISSLTSKRIDLISAAMFITPTRQEVVDFSLPIYSYGEGVVVLKQDTVAYQSFADMKGKR VGVQVGTAFVEPLQKSGMFSEVKLYETTPDLMRDANAGRIDAGVLDYPIAAFAVAKGQFPNLRMVTSFKPTMVNSIGMAT RKGDTELMGKVNVAVTKLKANGTIDAILKKWGL >Mature_272_residues PPGLAHRNRGMDFFDITERKLTMKFATLATSLAVTFALSLSGPASAQTVLKVGSTPTGSPFTFLDTKTNTIDGVMVDIVN AVAKESGFGVQIEPMQFSALISSLTSKRIDLISAAMFITPTRQEVVDFSLPIYSYGEGVVVLKQDTVAYQSFADMKGKRV GVQVGTAFVEPLQKSGMFSEVKLYETTPDLMRDANAGRIDAGVLDYPIAAFAVAKGQFPNLRMVTSFKPTMVNSIGMATR KGDTELMGKVNVAVTKLKANGTIDAILKKWGL
Specific function: Part of a binding-protein-dependent transport system for cystine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788228, Length=221, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787088, Length=250, Percent_Identity=31.2, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787085, Length=251, Percent_Identity=30.2788844621514, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787031, Length=249, Percent_Identity=30.5220883534137, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788649, Length=256, Percent_Identity=28.90625, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788648, Length=231, Percent_Identity=28.1385281385281, Blast_Score=78, Evalue=7e-16,
Paralogues:
None
Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 29368; Mature: 29237
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPGLAHRNRGMDFFDITERKLTMKFATLATSLAVTFALSLSGPASAQTVLKVGSTPTGS CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCCCCCC PFTFLDTKTNTIDGVMVDIVNAVAKESGFGVQIEPMQFSALISSLTSKRIDLISAAMFIT CEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHEEEC PTRQEVVDFSLPIYSYGEGVVVLKQDTVAYQSFADMKGKRVGVQVGTAFVEPLQKSGMFS CCHHHHHEECCCEEECCCCEEEEECCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCEE EVKLYETTPDLMRDANAGRIDAGVLDYPIAAFAVAKGQFPNLRMVTSFKPTMVNSIGMAT EEEEEECCHHHHHCCCCCCCCCCHHHCCHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCC RKGDTELMGKVNVAVTKLKANGTIDAILKKWGL CCCCHHHHEEEEEEEEEEECCCCHHHHHHHHCC >Mature Secondary Structure PPGLAHRNRGMDFFDITERKLTMKFATLATSLAVTFALSLSGPASAQTVLKVGSTPTGS CCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCCCCCC PFTFLDTKTNTIDGVMVDIVNAVAKESGFGVQIEPMQFSALISSLTSKRIDLISAAMFIT CEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHEEEC PTRQEVVDFSLPIYSYGEGVVVLKQDTVAYQSFADMKGKRVGVQVGTAFVEPLQKSGMFS CCHHHHHEECCCEEECCCCEEEEECCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCEE EVKLYETTPDLMRDANAGRIDAGVLDYPIAAFAVAKGQFPNLRMVTSFKPTMVNSIGMAT EEEEEECCHHHHHCCCCCCCCCCHHHCCHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCC RKGDTELMGKVNVAVTKLKANGTIDAILKKWGL CCCCHHHHEEEEEEEEEEECCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]