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The map label for this gene is yckA [H]

Identifier: 91787333

GI number: 91787333

Start: 1488196

End: 1488846

Strand: Reverse

Name: yckA [H]

Synonym: Bpro_1439

Alternate gene names: 91787333

Gene position: 1488846-1488196 (Counterclockwise)

Preceding gene: 91787334

Following gene: 91787332

Centisome position: 28.63

GC content: 62.06

Gene sequence:

>651_bases
ATGATCCAGTTTCTGCACCATGCACGGGAGTTCATGCCCATCCTGCTCCAGGGGGCCTGGCTCACCATCCTCGTGACGCT
GGGCTCCTTGCTGCTGTCCACCATGCTGGGCCTGGTGTGGGCCGTCATGCGCGTGTCGGGCATCCCGCTGCTGGCCAATG
CAAGTGCCGCCGTCATCAACCTGCTGCGCGGTATCCCGATCATCGTGATCTTGTTTTTCCTGTATTTCGTGATGCCTGAT
GTCGGCATTTCGCTGTCGGCGCTGCAGGCCGGCATCCTCGGCCTGGGCATCGCCTATTCGGCCTACCAGGCCGAGAATTT
CCGCGCCGGCATCGAAGCGGTGGACCATGGCCAGGTCGAGGCGGCCCGTGCCATGGGCATGAGCTGGGGGCTGATGATGC
GCCGCGTGGTGCTGCCGCAGGCCGTCAAGATCGTGCTGCCGCCCTACGGCAACATCATGATCATGATGCTCAAGGATTCG
TCGCAGGCCTCGACCATCACCGTCGCCGAACTGGCGCTGCAGGGCAAGATGATCGCCACGTCCACCTTCCAGAACGCGAC
CGTTTTCACGCTGGTCGCGCTGATTTACCTGGTCATGTGCGTGCCGCTGATTCTGCTGGTGCGCCATCTTGAGAAGCGGG
GCAAAAAATGA

Upstream 100 bases:

>100_bases
CAAGCTCAAGGCCAACGGCACCATTGACGCCATCCTGAAAAAGTGGGGCCTGTGAGCCTGACCCCGACCCACTCAGCAAT
CTACTGAAAAACGAATACCC

Downstream 100 bases:

>100_bases
TTGAAATACGCGACTTGCAGAAGTCCTACGGAACGCACCACGTTCTCAAAGGCATCAACGCCACCGTTTCCAAAGGCGAG
GTGGTGTGCATCATCGGCCC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MIQFLHHAREFMPILLQGAWLTILVTLGSLLLSTMLGLVWAVMRVSGIPLLANASAAVINLLRGIPIIVILFFLYFVMPD
VGISLSALQAGILGLGIAYSAYQAENFRAGIEAVDHGQVEAARAMGMSWGLMMRRVVLPQAVKIVLPPYGNIMIMMLKDS
SQASTITVAELALQGKMIATSTFQNATVFTLVALIYLVMCVPLILLVRHLEKRGKK

Sequences:

>Translated_216_residues
MIQFLHHAREFMPILLQGAWLTILVTLGSLLLSTMLGLVWAVMRVSGIPLLANASAAVINLLRGIPIIVILFFLYFVMPD
VGISLSALQAGILGLGIAYSAYQAENFRAGIEAVDHGQVEAARAMGMSWGLMMRRVVLPQAVKIVLPPYGNIMIMMLKDS
SQASTITVAELALQGKMIATSTFQNATVFTLVALIYLVMCVPLILLVRHLEKRGKK
>Mature_216_residues
MIQFLHHAREFMPILLQGAWLTILVTLGSLLLSTMLGLVWAVMRVSGIPLLANASAAVINLLRGIPIIVILFFLYFVMPD
VGISLSALQAGILGLGIAYSAYQAENFRAGIEAVDHGQVEAARAMGMSWGLMMRRVVLPQAVKIVLPPYGNIMIMMLKDS
SQASTITVAELALQGKMIATSTFQNATVFTLVALIYLVMCVPLILLVRHLEKRGKK

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=204, Percent_Identity=37.2549019607843, Blast_Score=144, Evalue=3e-36,
Organism=Escherichia coli, GI1787030, Length=206, Percent_Identity=32.0388349514563, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1788645, Length=229, Percent_Identity=33.6244541484716, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787087, Length=232, Percent_Identity=28.8793103448276, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786873, Length=210, Percent_Identity=26.6666666666667, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=28.0373831775701, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082239, Length=191, Percent_Identity=31.413612565445, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786874, Length=206, Percent_Identity=25.7281553398058, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=26.8518518518519, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48994930, Length=127, Percent_Identity=32.2834645669291, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23521; Mature: 23521

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQFLHHAREFMPILLQGAWLTILVTLGSLLLSTMLGLVWAVMRVSGIPLLANASAAVIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHH
LLRGIPIIVILFFLYFVMPDVGISLSALQAGILGLGIAYSAYQAENFRAGIEAVDHGQVE
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AARAMGMSWGLMMRRVVLPQAVKIVLPPYGNIMIMMLKDSSQASTITVAELALQGKMIAT
HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHH
STFQNATVFTLVALIYLVMCVPLILLVRHLEKRGKK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIQFLHHAREFMPILLQGAWLTILVTLGSLLLSTMLGLVWAVMRVSGIPLLANASAAVIN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHH
LLRGIPIIVILFFLYFVMPDVGISLSALQAGILGLGIAYSAYQAENFRAGIEAVDHGQVE
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AARAMGMSWGLMMRRVVLPQAVKIVLPPYGNIMIMMLKDSSQASTITVAELALQGKMIAT
HHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHH
STFQNATVFTLVALIYLVMCVPLILLVRHLEKRGKK
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]