| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is hutH [H]
Identifier: 91787054
GI number: 91787054
Start: 1197789
End: 1199309
Strand: Reverse
Name: hutH [H]
Synonym: Bpro_1157
Alternate gene names: 91787054
Gene position: 1199309-1197789 (Counterclockwise)
Preceding gene: 91787055
Following gene: 91787053
Centisome position: 23.06
GC content: 69.03
Gene sequence:
>1521_bases ATGACGATTGAAGTCGGCGAAACATGGGTGGGCATAGCCGATCTGGTGCGCGTCGCCCGCCAGGGTGAAGCCGTCGCGCT GGCACCCGGTGCCCGTGCGCGGGTTGCCGCGGCGCGCGATGTGGTAGTCCGCCTGGCGGCGTCCGGCGCGCCTGTTTATG GCCTCAATTCCGCGCTGGGTGCCAACACGGGCGCACTGCTGGCGGAAGATGATCTGGAAGACTATCAGCGCCGGGCCGTG CGTGCCCGCGCGGTGGCGGTCGGACCGGCTTATGAGCAGTCCAGTGTTCGCGCCATGCAATTTGCCCGCATCGCCGGCCT GGCGCGCGGTGGCTCCGGCGTGTCACCCGGCGTGCTGGATGCCTGTATCGCGCTGCTGAACCACCGGGTGCACCCGGTGG TGCCACGCTTCGGCTCCATTGGTGTGGCCGACCTGCCCCAGTTGTCGCATTTGGCCTTGCCCCTGTTCGGCGAAGGCGAG GCCGAATTTGGCGGCGAGGTGCTCAAGGGCGGCGTTGCCCTGGAGCGCGCCGGGCTGCAGCCCGTCAAGCTCGGCGCCAA GGACGGCCTGGCGCTGATCAGCTCCAACGCCGCCACCACCGCGCGTGCCGCACTGGTGCTGCATGACGCCACGGCCGCAC TGGACGCCTGGCTGGCCGCGGTGGCGCTGGGATTCGAGGGCTTTCGCGCCAACTTGTCCCCGCTCCATCCCAGCGCGGTC ATGGCCAGGCCCGCGACCGGCCAGGTGGAAGTTGCCAGCCAGCTGCGCGCGCTCCTGAAGGGCAGCGCACTGCTCGCGCC GGGTGCCGCCCGCCGCGTTCAGGACCCGGTCTCGCTGCGTGTCGTGGCCCAGGTGCATGGCGCTGCCCGGGGCATGATAG CCCTGGCCCGGGAGCAGGTCGAAATGGAACTCAACAGCGCCGCCGACAGCCCGCTGGTGCTGGCAGACGACGGCATCATG CTGTCCAACGGAAACTTTCACGTGCCGGCCCTGGCGCTCGCGCTGGACGCCTGCGCGATTGCGCTGGCACAGGCCGCCAG CATGTCTGTGGCCCGCTGCCAGCGCTTCATGTCACCCGCGCTCACCGGCCTGCCCCTGCAGCTGACACGCCACGGGCCAG CCCATTCCGGCTTTGCCACGGTGCAAAAAACCCTGACCGCCCTGTGGGCCGAGATACGGTTGCGCGCCAACCCCGGCTCG CTCGATTACCTGCCGGTCTCCGAAGGGCTGGAGGATCATGCGTGCATGGCGCTGGGCGTTGCCGAAAAACTGGGTGAACT GCTGGAGCGCGTCCGCTACCTCATCGCCATTGAACTTCTGATCGCCGCCCAGGCCGTGGACCTGCGTGAAACCGATCAGG CCACCATGGGTGAAGGCGCGCGCGCGACCTATCTGCAACTGCGCGACCTGGTCGCCATGCTGGACGAAGACCGCCCGCTG GGCCCGGACATTGACCGGGTCCAACGCGCTGTAGCCTCGGGCTTGTTCAGTTCATGGGCCGTCAGTCCAGGGGCCGCGTG A
Upstream 100 bases:
>100_bases GGAACCCAAAGACGTGGCACGCGACTTCCTCAAAGCCAAGGGGCTGGTCAAGTAAGCCCCGCAGGTCACAAGCGCATCAG CCAACGGGAACTGACAGCCC
Downstream 100 bases:
>100_bases CACCGTTATGAAATGGTTCCTGCGCAACTGGACTGACATTGTGTATGCCCTGTGGGAACACATTGCCATCTCCCTGACGG CGCTCACGATTGCATTCGCC
Product: histidine ammonia-lyase
Products: NA
Alternate protein names: Histidase [H]
Number of amino acids: Translated: 506; Mature: 505
Protein sequence:
>506_residues MTIEVGETWVGIADLVRVARQGEAVALAPGARARVAAARDVVVRLAASGAPVYGLNSALGANTGALLAEDDLEDYQRRAV RARAVAVGPAYEQSSVRAMQFARIAGLARGGSGVSPGVLDACIALLNHRVHPVVPRFGSIGVADLPQLSHLALPLFGEGE AEFGGEVLKGGVALERAGLQPVKLGAKDGLALISSNAATTARAALVLHDATAALDAWLAAVALGFEGFRANLSPLHPSAV MARPATGQVEVASQLRALLKGSALLAPGAARRVQDPVSLRVVAQVHGAARGMIALAREQVEMELNSAADSPLVLADDGIM LSNGNFHVPALALALDACAIALAQAASMSVARCQRFMSPALTGLPLQLTRHGPAHSGFATVQKTLTALWAEIRLRANPGS LDYLPVSEGLEDHACMALGVAEKLGELLERVRYLIAIELLIAAQAVDLRETDQATMGEGARATYLQLRDLVAMLDEDRPL GPDIDRVQRAVASGLFSSWAVSPGAA
Sequences:
>Translated_506_residues MTIEVGETWVGIADLVRVARQGEAVALAPGARARVAAARDVVVRLAASGAPVYGLNSALGANTGALLAEDDLEDYQRRAV RARAVAVGPAYEQSSVRAMQFARIAGLARGGSGVSPGVLDACIALLNHRVHPVVPRFGSIGVADLPQLSHLALPLFGEGE AEFGGEVLKGGVALERAGLQPVKLGAKDGLALISSNAATTARAALVLHDATAALDAWLAAVALGFEGFRANLSPLHPSAV MARPATGQVEVASQLRALLKGSALLAPGAARRVQDPVSLRVVAQVHGAARGMIALAREQVEMELNSAADSPLVLADDGIM LSNGNFHVPALALALDACAIALAQAASMSVARCQRFMSPALTGLPLQLTRHGPAHSGFATVQKTLTALWAEIRLRANPGS LDYLPVSEGLEDHACMALGVAEKLGELLERVRYLIAIELLIAAQAVDLRETDQATMGEGARATYLQLRDLVAMLDEDRPL GPDIDRVQRAVASGLFSSWAVSPGAA >Mature_505_residues TIEVGETWVGIADLVRVARQGEAVALAPGARARVAAARDVVVRLAASGAPVYGLNSALGANTGALLAEDDLEDYQRRAVR ARAVAVGPAYEQSSVRAMQFARIAGLARGGSGVSPGVLDACIALLNHRVHPVVPRFGSIGVADLPQLSHLALPLFGEGEA EFGGEVLKGGVALERAGLQPVKLGAKDGLALISSNAATTARAALVLHDATAALDAWLAAVALGFEGFRANLSPLHPSAVM ARPATGQVEVASQLRALLKGSALLAPGAARRVQDPVSLRVVAQVHGAARGMIALAREQVEMELNSAADSPLVLADDGIML SNGNFHVPALALALDACAIALAQAASMSVARCQRFMSPALTGLPLQLTRHGPAHSGFATVQKTLTALWAEIRLRANPGSL DYLPVSEGLEDHACMALGVAEKLGELLERVRYLIAIELLIAAQAVDLRETDQATMGEGARATYLQLRDLVAMLDEDRPLG PDIDRVQRAVASGLFSSWAVSPGAA
Specific function: Unknown
COG id: COG2986
COG function: function code E; Histidine ammonia-lyase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PAL/histidase family [H]
Homologues:
Organism=Homo sapiens, GI4504333, Length=499, Percent_Identity=33.4669338677355, Blast_Score=220, Evalue=2e-57, Organism=Caenorhabditis elegans, GI17567831, Length=483, Percent_Identity=34.1614906832298, Blast_Score=197, Evalue=8e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005921 - InterPro: IPR008948 - InterPro: IPR001106 - InterPro: IPR022313 [H]
Pfam domain/function: PF00221 PAL [H]
EC number: =4.3.1.3 [H]
Molecular weight: Translated: 52483; Mature: 52352
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIEVGETWVGIADLVRVARQGEAVALAPGARARVAAARDVVVRLAASGAPVYGLNSALG CEEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCHHCC ANTGALLAEDDLEDYQRRAVRARAVAVGPAYEQSSVRAMQFARIAGLARGGSGVSPGVLD CCCCCEEECCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH ACIALLNHRVHPVVPRFGSIGVADLPQLSHLALPLFGEGEAEFGGEVLKGGVALERAGLQ HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHCHHHHHCCHHHHHCCCC PVKLGAKDGLALISSNAATTARAALVLHDATAALDAWLAAVALGFEGFRANLSPLHPSAV CEEECCCCCEEEEECCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH MARPATGQVEVASQLRALLKGSALLAPGAARRVQDPVSLRVVAQVHGAARGMIALAREQV EECCCCCCHHHHHHHHHHHCCCCEECCCHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHH EMELNSAADSPLVLADDGIMLSNGNFHVPALALALDACAIALAQAASMSVARCQRFMSPA HHHHHCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTGLPLQLTRHGPAHSGFATVQKTLTALWAEIRLRANPGSLDYLPVSEGLEDHACMALGV HCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCEEEECCCCCCCHHHHHHHH AEKLGELLERVRYLIAIELLIAAQAVDLRETDQATMGEGARATYLQLRDLVAMLDEDRPL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCC GPDIDRVQRAVASGLFSSWAVSPGAA CCCHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TIEVGETWVGIADLVRVARQGEAVALAPGARARVAAARDVVVRLAASGAPVYGLNSALG EEECCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCHHCC ANTGALLAEDDLEDYQRRAVRARAVAVGPAYEQSSVRAMQFARIAGLARGGSGVSPGVLD CCCCCEEECCHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH ACIALLNHRVHPVVPRFGSIGVADLPQLSHLALPLFGEGEAEFGGEVLKGGVALERAGLQ HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHCHHHHHCCHHHHHCCCC PVKLGAKDGLALISSNAATTARAALVLHDATAALDAWLAAVALGFEGFRANLSPLHPSAV CEEECCCCCEEEEECCCCHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH MARPATGQVEVASQLRALLKGSALLAPGAARRVQDPVSLRVVAQVHGAARGMIALAREQV EECCCCCCHHHHHHHHHHHCCCCEECCCHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHH EMELNSAADSPLVLADDGIMLSNGNFHVPALALALDACAIALAQAASMSVARCQRFMSPA HHHHHCCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTGLPLQLTRHGPAHSGFATVQKTLTALWAEIRLRANPGSLDYLPVSEGLEDHACMALGV HCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCEEEECCCCCCCHHHHHHHH AEKLGELLERVRYLIAIELLIAAQAVDLRETDQATMGEGARATYLQLRDLVAMLDEDRPL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCC GPDIDRVQRAVASGLFSSWAVSPGAA CCCHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA