| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is mrcA [H]
Identifier: 91786682
GI number: 91786682
Start: 801194
End: 803608
Strand: Reverse
Name: mrcA [H]
Synonym: Bpro_0780
Alternate gene names: 91786682
Gene position: 803608-801194 (Counterclockwise)
Preceding gene: 91786719
Following gene: 91786679
Centisome position: 15.45
GC content: 60.91
Gene sequence:
>2415_bases ATGTCCTCCAAGCCCTCCTCTTCGAACTCAAACTCCCACGCGGTGATGCAGCCCTCCTGGCAACGCTGGCTGATCAAGCT GGTTTTGTGGGGCGCCGGGCTGGCAGTCGCGGGGGTGGTCGGCATCCTTCTGTTTGTAGCCGTCGCCCTGTCGGTGGCCT ACCCCAACCTGCCGGACATCTCGGATTTGCTGGACTACCGGCCCAAGTTGCCGCTGCGTGTGTATTCCGCAGATGGCGTG GTGATTGGCGAGTTTGGCGAAGAACGCCGCAACCTCACGCCCATCAAAGACATCCCCCAGGTCATGAAGGACGCCGTGCT GGCGATCGAAGATGCCCGCTTTTTTTCGCATGGCGGCGTGGACTATCTTGGTGTGATCCGCGCCGGCTTTGCCAATGTGG GCCGTGCAAAAAGCCAGGGCGCCTCCACCATCACCATGCAGGTGGCCCGCAATGTGTACCTGTCTGCCGAAAAGAGCTAT ACGCGCAAGATTTATGAAATCCTGCTGACGTTCAAGCTGGAGCACCTGCTGACCAAGGATCAGATCCTCGAAATCTACAT GAACCAGATTTTTCTGGGAAACCGGGCCTACGGCTTTGCCGCGGCTTCGGAGGCCTACTTTGGCAAGCCCCTCAAAAACA TCTCGATCGCCGAAGCCGCCATGCTGGCCGGCCTGCCCAAAGCGCCCTCGGCGTACAACCCGATCGTCAACCCCAAGCGC GCGAAAGCCCGCCAGCTCTACATCATTGAGCGCATGCAGGAGAACGGCTTCATCACGGCAGAGCAGGCCAAGGCAGCCAA AGAGGAAGAGCTCCAGGTCAGGGTCGGGCGCGATAACGGCCGGGTGCATGCCGAATATGTCGCTGAAACCGTACGCCAGC TGGTCCATAACCAGTATGGCGACGAAACCTATACACGCGGCCTCAATGTCTACACCACCTTGCGCGCCGCCGACCAGACA GTAGCTTACAAGGCCTTGCGCAAGGGCATCATGGACTACGAGCGCCGGCAAATTTACCGCGGTCCTGAGAAGTTCATCGA CCTTCCGGCCAACCCGCAGGAGACGGAAGATGCGATTGACGACGCACTGACCGACAACCCCGACAACGGCGACGTGATGT CGGCGGTGGTGCTGGAAGCCACTCCCAAGCGGATTCTCGCGATGCGCCAGAACAGCGAGACGGTTGAAATCACCGGCGAA GGGCTTCGGCCGGCGCAATCCGGCCTGGCCGACAAGGCGGGCCCCAGCATCAAAATTCGCCGTGGCGCCCTGATCCGGGT GGCCAAAACGCCAAAAAACACCTGGGAGATCACCCAGCTGCCTGAGGTCGAAGGGGCTTTTGTGGCGCTGGACCCGCGTG ATGGCTCCATTCGCGCGCTGGTGGGCGGGTTTGATTTTGAGAAGAACAAGTTCAACCATGTGACCCAGGCCTGGCGGCAA CCGGGCTCCAGCTTCAAGCCCTTCATCTATTCGGCTGCCCTGGAAAAAGGCTTCACGCCGGCCACCGTGGTCAACGACGC GCCCCTGTTTTTTGACGCCGGCGTGACCGGCGGCCAGCCATGGGAGCCCAAGAACTATGACGGCACCTTCGAGGGGCCCA TGAATTTACGGACCGGCCTGAAAAAATCAAAAAACATGATTTCCATCCGCATTCTGCAGTCGGTGGGCGCGCAGTATGCA CAGGACTGGATCACCCACTTCGGCTTTGAAGCTGAAAAACATCCGGCGTACCTGACCATGGCACTGGGCGCCGGCTCCGT CACGCCCATGCAAATGGCCACGGCTTATTCGGTGTTTGCCAATGGCGGCTACCGCGTCAACCCCTACCTGGTGACCAAGA TCACCGACCAGCGCGGCAAGGTGCTGCTCGAAACCACACCGCCCGTCCTGGATGAGTCCGCCAGGGCCATCGATGCCCGC AACGCCTTCATCATGGACAGCCTGTTGCAGGAAGTGGCGCGCTCAGGCACAGCCGCCAGAGCGCAGGCGACCCTCAAGCG CCCCGACCTCTTCGGTAAAACCGGTACCACCAATGACTCGATCGATACCTGGTTCGTCGGCTTCCAGCCCACCCTGGCGG CAGCCGTCTGGATGGGTTACGACACGCCCAAAAAGCTTGGCGATCGGGAAACCGGCGGCGGCCTGAGCCTGCCGATCTGG ATCAACTTCATGGAATACGCCCTGAAAGGCGTGCCGGTCACCGAATACCCGGCGCCCGAAGGCGTGGTGAATGTCAATGG CGAGTGGTACTACAACGAGTACGCCAGGGGCTCGGGGGTGAGCAGCGTGGGAACGCAGGATCCGGCAGCGGTCAACGCCG GCCAACTGCCCGCCCCGGGCACGCCGGGCGGCCCGATTCAGGTCTTGCCACCCTCTGACGAAAAGAAACGGATTCTGGAT CTGTTCAAGAACTGA
Upstream 100 bases:
>100_bases CAATGTCTGCAAACGTAAAAGTACGGCGTTCTGAGCAGCGCCGGACAGGTACGTGTTTCAGGGATTTTTATAATAGCTTC GCGACTTTACGATTGCCTAC
Downstream 100 bases:
>100_bases CGGACAAAAATTGCGGCGTCACAGTTGACTCCCGCTGCCGGCACCGGCGCGGATTCGACCTTCCTCGCTACCCGAAGGCC TACTTGCCGGTCACCGGAAC
Product: penicillin-binding protein 1A
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 804; Mature: 803
Protein sequence:
>804_residues MSSKPSSSNSNSHAVMQPSWQRWLIKLVLWGAGLAVAGVVGILLFVAVALSVAYPNLPDISDLLDYRPKLPLRVYSADGV VIGEFGEERRNLTPIKDIPQVMKDAVLAIEDARFFSHGGVDYLGVIRAGFANVGRAKSQGASTITMQVARNVYLSAEKSY TRKIYEILLTFKLEHLLTKDQILEIYMNQIFLGNRAYGFAAASEAYFGKPLKNISIAEAAMLAGLPKAPSAYNPIVNPKR AKARQLYIIERMQENGFITAEQAKAAKEEELQVRVGRDNGRVHAEYVAETVRQLVHNQYGDETYTRGLNVYTTLRAADQT VAYKALRKGIMDYERRQIYRGPEKFIDLPANPQETEDAIDDALTDNPDNGDVMSAVVLEATPKRILAMRQNSETVEITGE GLRPAQSGLADKAGPSIKIRRGALIRVAKTPKNTWEITQLPEVEGAFVALDPRDGSIRALVGGFDFEKNKFNHVTQAWRQ PGSSFKPFIYSAALEKGFTPATVVNDAPLFFDAGVTGGQPWEPKNYDGTFEGPMNLRTGLKKSKNMISIRILQSVGAQYA QDWITHFGFEAEKHPAYLTMALGAGSVTPMQMATAYSVFANGGYRVNPYLVTKITDQRGKVLLETTPPVLDESARAIDAR NAFIMDSLLQEVARSGTAARAQATLKRPDLFGKTGTTNDSIDTWFVGFQPTLAAAVWMGYDTPKKLGDRETGGGLSLPIW INFMEYALKGVPVTEYPAPEGVVNVNGEWYYNEYARGSGVSSVGTQDPAAVNAGQLPAPGTPGGPIQVLPPSDEKKRILD LFKN
Sequences:
>Translated_804_residues MSSKPSSSNSNSHAVMQPSWQRWLIKLVLWGAGLAVAGVVGILLFVAVALSVAYPNLPDISDLLDYRPKLPLRVYSADGV VIGEFGEERRNLTPIKDIPQVMKDAVLAIEDARFFSHGGVDYLGVIRAGFANVGRAKSQGASTITMQVARNVYLSAEKSY TRKIYEILLTFKLEHLLTKDQILEIYMNQIFLGNRAYGFAAASEAYFGKPLKNISIAEAAMLAGLPKAPSAYNPIVNPKR AKARQLYIIERMQENGFITAEQAKAAKEEELQVRVGRDNGRVHAEYVAETVRQLVHNQYGDETYTRGLNVYTTLRAADQT VAYKALRKGIMDYERRQIYRGPEKFIDLPANPQETEDAIDDALTDNPDNGDVMSAVVLEATPKRILAMRQNSETVEITGE GLRPAQSGLADKAGPSIKIRRGALIRVAKTPKNTWEITQLPEVEGAFVALDPRDGSIRALVGGFDFEKNKFNHVTQAWRQ PGSSFKPFIYSAALEKGFTPATVVNDAPLFFDAGVTGGQPWEPKNYDGTFEGPMNLRTGLKKSKNMISIRILQSVGAQYA QDWITHFGFEAEKHPAYLTMALGAGSVTPMQMATAYSVFANGGYRVNPYLVTKITDQRGKVLLETTPPVLDESARAIDAR NAFIMDSLLQEVARSGTAARAQATLKRPDLFGKTGTTNDSIDTWFVGFQPTLAAAVWMGYDTPKKLGDRETGGGLSLPIW INFMEYALKGVPVTEYPAPEGVVNVNGEWYYNEYARGSGVSSVGTQDPAAVNAGQLPAPGTPGGPIQVLPPSDEKKRILD LFKN >Mature_803_residues SSKPSSSNSNSHAVMQPSWQRWLIKLVLWGAGLAVAGVVGILLFVAVALSVAYPNLPDISDLLDYRPKLPLRVYSADGVV IGEFGEERRNLTPIKDIPQVMKDAVLAIEDARFFSHGGVDYLGVIRAGFANVGRAKSQGASTITMQVARNVYLSAEKSYT RKIYEILLTFKLEHLLTKDQILEIYMNQIFLGNRAYGFAAASEAYFGKPLKNISIAEAAMLAGLPKAPSAYNPIVNPKRA KARQLYIIERMQENGFITAEQAKAAKEEELQVRVGRDNGRVHAEYVAETVRQLVHNQYGDETYTRGLNVYTTLRAADQTV AYKALRKGIMDYERRQIYRGPEKFIDLPANPQETEDAIDDALTDNPDNGDVMSAVVLEATPKRILAMRQNSETVEITGEG LRPAQSGLADKAGPSIKIRRGALIRVAKTPKNTWEITQLPEVEGAFVALDPRDGSIRALVGGFDFEKNKFNHVTQAWRQP GSSFKPFIYSAALEKGFTPATVVNDAPLFFDAGVTGGQPWEPKNYDGTFEGPMNLRTGLKKSKNMISIRILQSVGAQYAQ DWITHFGFEAEKHPAYLTMALGAGSVTPMQMATAYSVFANGGYRVNPYLVTKITDQRGKVLLETTPPVLDESARAIDARN AFIMDSLLQEVARSGTAARAQATLKRPDLFGKTGTTNDSIDTWFVGFQPTLAAAVWMGYDTPKKLGDRETGGGLSLPIWI NFMEYALKGVPVTEYPAPEGVVNVNGEWYYNEYARGSGVSSVGTQDPAAVNAGQLPAPGTPGGPIQVLPPSDEKKRILDL FKN
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=806, Percent_Identity=35.9801488833747, Blast_Score=504, Evalue=1e-144, Organism=Escherichia coli, GI1786343, Length=251, Percent_Identity=34.6613545816733, Blast_Score=131, Evalue=1e-31, Organism=Escherichia coli, GI1788867, Length=209, Percent_Identity=37.799043062201, Blast_Score=117, Evalue=4e-27, Organism=Escherichia coli, GI1789601, Length=167, Percent_Identity=31.7365269461078, Blast_Score=86, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 88122; Mature: 87991
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKPSSSNSNSHAVMQPSWQRWLIKLVLWGAGLAVAGVVGILLFVAVALSVAYPNLPDI CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCH SDLLDYRPKLPLRVYSADGVVIGEFGEERRNLTPIKDIPQVMKDAVLAIEDARFFSHGGV HHHHHCCCCCCEEEEECCCEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC DYLGVIRAGFANVGRAKSQGASTITMQVARNVYLSAEKSYTRKIYEILLTFKLEHLLTKD HHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHH QILEIYMNQIFLGNRAYGFAAASEAYFGKPLKNISIAEAAMLAGLPKAPSAYNPIVNPKR HHHHHHHHHHEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH AKARQLYIIERMQENGFITAEQAKAAKEEELQVRVGRDNGRVHAEYVAETVRQLVHNQYG HHHHHHHHHHHHHCCCCEEHHHHHCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHCC DETYTRGLNVYTTLRAADQTVAYKALRKGIMDYERRQIYRGPEKFIDLPANPQETEDAID CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCHHHHHHH DALTDNPDNGDVMSAVVLEATPKRILAMRQNSETVEITGEGLRPAQSGLADKAGPSIKIR HHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCEEEE RGALIRVAKTPKNTWEITQLPEVEGAFVALDPRDGSIRALVGGFDFEKNKFNHVTQAWRQ CCEEEEEECCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHC PGSSFKPFIYSAALEKGFTPATVVNDAPLFFDAGVTGGQPWEPKNYDGTFEGPMNLRTGL CCCCCCCHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH KKSKNMISIRILQSVGAQYAQDWITHFGFEAEKHPAYLTMALGAGSVTPMQMATAYSVFA HHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC NGGYRVNPYLVTKITDQRGKVLLETTPPVLDESARAIDARNAFIMDSLLQEVARSGTAAR CCCEEECCEEEEEEECCCCCEEEECCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCHHH AQATLKRPDLFGKTGTTNDSIDTWFVGFQPTLAAAVWMGYDTPKKLGDRETGGGLSLPIW HHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCHHHCCCCCCCCCEEEHHH INFMEYALKGVPVTEYPAPEGVVNVNGEWYYNEYARGSGVSSVGTQDPAAVNAGQLPAPG HHHHHHHHCCCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC TPGGPIQVLPPSDEKKRILDLFKN CCCCCEEEECCCCHHHHHHHHHCC >Mature Secondary Structure SSKPSSSNSNSHAVMQPSWQRWLIKLVLWGAGLAVAGVVGILLFVAVALSVAYPNLPDI CCCCCCCCCCCEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCH SDLLDYRPKLPLRVYSADGVVIGEFGEERRNLTPIKDIPQVMKDAVLAIEDARFFSHGGV HHHHHCCCCCCEEEEECCCEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC DYLGVIRAGFANVGRAKSQGASTITMQVARNVYLSAEKSYTRKIYEILLTFKLEHLLTKD HHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHH QILEIYMNQIFLGNRAYGFAAASEAYFGKPLKNISIAEAAMLAGLPKAPSAYNPIVNPKR HHHHHHHHHHEECCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCH AKARQLYIIERMQENGFITAEQAKAAKEEELQVRVGRDNGRVHAEYVAETVRQLVHNQYG HHHHHHHHHHHHHCCCCEEHHHHHCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHCC DETYTRGLNVYTTLRAADQTVAYKALRKGIMDYERRQIYRGPEKFIDLPANPQETEDAID CHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCHHHHHHH DALTDNPDNGDVMSAVVLEATPKRILAMRQNSETVEITGEGLRPAQSGLADKAGPSIKIR HHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCEEEE RGALIRVAKTPKNTWEITQLPEVEGAFVALDPRDGSIRALVGGFDFEKNKFNHVTQAWRQ CCEEEEEECCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHC PGSSFKPFIYSAALEKGFTPATVVNDAPLFFDAGVTGGQPWEPKNYDGTFEGPMNLRTGL CCCCCCCHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH KKSKNMISIRILQSVGAQYAQDWITHFGFEAEKHPAYLTMALGAGSVTPMQMATAYSVFA HHCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC NGGYRVNPYLVTKITDQRGKVLLETTPPVLDESARAIDARNAFIMDSLLQEVARSGTAAR CCCEEECCEEEEEEECCCCCEEEECCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCHHH AQATLKRPDLFGKTGTTNDSIDTWFVGFQPTLAAAVWMGYDTPKKLGDRETGGGLSLPIW HHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCHHHCCCCCCCCCEEEHHH INFMEYALKGVPVTEYPAPEGVVNVNGEWYYNEYARGSGVSSVGTQDPAAVNAGQLPAPG HHHHHHHHCCCCCCCCCCCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC TPGGPIQVLPPSDEKKRILDLFKN CCCCCEEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA