BacMap

Definition	Polaromonas sp. JS666 chromosome, complete genome.
Accession	NC_007948
Length	5,200,264

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The map label for this gene is rbpE [H]

Identifier: 91786529

GI number: 91786529

Start: 631859

End: 632263

Strand: Reverse

Name: rbpE [H]

Synonym: Bpro_0624

Alternate gene names: 91786529

Gene position: 632263-631859 (Counterclockwise)

Preceding gene: 91786531

Following gene: 91786528

Centisome position: 12.16

GC content: 63.7

Gene sequence:

>405_bases
ATGGGCAACAAACTTTACGTCGGCAACCTGCCTTACACAGTGCGCGACGAAGATCTGCAACAATCTTTTGGCGCTTTCGG
CTCCATCACCAGCGCCAAAGTCATGATGGAACGCGACACGGGTCGCTCCAAAGGCTTTGGTTTTGTCGAAATGGGCAGCG
ATGCCGAAGCGCAAGCCGCAATTGCCGGCATGAATGGCCAGTCTCTTGGCGGCCGTAGCATCACCGTGAACGAAGCACGC
CCCATGGAAGCACGCCCTCCCCGCACCGGCGGCTTTGGCGGTGGTGGTGGTTACGGCGGCGGTGGCGATCGCTCTGGCGG
CGGTGGCTACGGCGGCGGCGGTGGTGGCCGTTCTGGCGGTGGTGGCTATGGCGGCGGCAGCGGTGGTGGCCGCGGCGGCT
ACTAA

Upstream 100 bases:

>100_bases
TAGTGATCGGTCAGTTTCGCGCGCTACGGCGGTACTTTTGAGTTTGTTGTGCTTTCGGGACCCCATCGCTTTTGTTTTTA
TGTGTTTTTGAGGAGTCCTT

Downstream 100 bases:

>100_bases
GCCCTGCAAACCCCGTCAACGGCAGAGATGCCGTTGCAAACCAGCTGTCTCAGCCTTGCGCTGAGCAAAGCCTGTAAGGC
TTCGAAACTTCGGTTTTGAA

Product: RNA recognition motif-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MGNKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNEAR
PMEARPPRTGGFGGGGGYGGGGDRSGGGGYGGGGGGRSGGGGYGGGSGGGRGGY

Sequences:

>Translated_134_residues
MGNKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNEAR
PMEARPPRTGGFGGGGGYGGGGDRSGGGGYGGGGGGRSGGGGYGGGSGGGRGGY
>Mature_133_residues
GNKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSLGGRSITVNEARP
MEARPPRTGGFGGGGGYGGGGDRSGGGGYGGGGGGRSGGGGYGGGSGGGRGGY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI208431833, Length=81, Percent_Identity=50.6172839506173, Blast_Score=77, Evalue=6e-15,
Organism=Homo sapiens, GI4504715, Length=81, Percent_Identity=50.6172839506173, Blast_Score=77, Evalue=6e-15,
Organism=Homo sapiens, GI208431836, Length=81, Percent_Identity=50.6172839506173, Blast_Score=76, Evalue=7e-15,
Organism=Homo sapiens, GI24762232, Length=80, Percent_Identity=45, Blast_Score=73, Evalue=6e-14,
Organism=Homo sapiens, GI289547602, Length=86, Percent_Identity=41.8604651162791, Blast_Score=73, Evalue=7e-14,
Organism=Homo sapiens, GI71164894, Length=86, Percent_Identity=41.8604651162791, Blast_Score=73, Evalue=8e-14,
Organism=Homo sapiens, GI289547605, Length=86, Percent_Identity=41.8604651162791, Blast_Score=73, Evalue=9e-14,
Organism=Homo sapiens, GI289547741, Length=86, Percent_Identity=41.8604651162791, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI70780381, Length=86, Percent_Identity=41.8604651162791, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI289547743, Length=86, Percent_Identity=41.8604651162791, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI4502847, Length=76, Percent_Identity=40.7894736842105, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI45238849, Length=81, Percent_Identity=49.3827160493827, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI46367787, Length=81, Percent_Identity=49.3827160493827, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI153252068, Length=76, Percent_Identity=40.7894736842105, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI71164871, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI289547568, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI38570081, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI5729794, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI289547566, Length=79, Percent_Identity=41.7721518987342, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI68303645, Length=79, Percent_Identity=40.5063291139241, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI134152719, Length=79, Percent_Identity=40.5063291139241, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI134152680, Length=79, Percent_Identity=40.5063291139241, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI68303647, Length=79, Percent_Identity=40.5063291139241, Blast_Score=66, Evalue=8e-12,
Organism=Homo sapiens, GI4507499, Length=83, Percent_Identity=40.9638554216867, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI291084655, Length=75, Percent_Identity=44, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI77695912, Length=83, Percent_Identity=40.9638554216867, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI18201888, Length=72, Percent_Identity=45.8333333333333, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI56699409, Length=76, Percent_Identity=39.4736842105263, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI5032069, Length=80, Percent_Identity=41.25, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI188219593, Length=84, Percent_Identity=40.4761904761905, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI188219591, Length=84, Percent_Identity=40.4761904761905, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI185135971, Length=84, Percent_Identity=45.2380952380952, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI242117971, Length=76, Percent_Identity=38.1578947368421, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI21361809, Length=76, Percent_Identity=38.1578947368421, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI14149675, Length=75, Percent_Identity=36, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71980775, Length=86, Percent_Identity=43.0232558139535, Blast_Score=69, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=40, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17567131, Length=84, Percent_Identity=44.047619047619, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=38.6666666666667, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17567133, Length=84, Percent_Identity=44.047619047619, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32564506, Length=75, Percent_Identity=42.6666666666667, Blast_Score=67, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32564504, Length=75, Percent_Identity=42.6666666666667, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531963, Length=75, Percent_Identity=42.6666666666667, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531965, Length=75, Percent_Identity=42.6666666666667, Blast_Score=66, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71993209, Length=81, Percent_Identity=44.4444444444444, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71993203, Length=81, Percent_Identity=44.4444444444444, Blast_Score=66, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71993217, Length=81, Percent_Identity=44.4444444444444, Blast_Score=66, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17508587, Length=76, Percent_Identity=38.1578947368421, Blast_Score=66, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6321013, Length=81, Percent_Identity=43.2098765432099, Blast_Score=65, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324312, Length=75, Percent_Identity=44, Blast_Score=63, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574919, Length=86, Percent_Identity=43.0232558139535, Blast_Score=73, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24663908, Length=86, Percent_Identity=43.0232558139535, Blast_Score=72, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24583875, Length=85, Percent_Identity=37.6470588235294, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI281364913, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24583877, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24583873, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24583879, Length=85, Percent_Identity=37.6470588235294, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161078704, Length=88, Percent_Identity=38.6363636363636, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI161078702, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281362714, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24649515, Length=86, Percent_Identity=37.2093023255814, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649517, Length=86, Percent_Identity=37.2093023255814, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649513, Length=86, Percent_Identity=37.2093023255814, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649519, Length=86, Percent_Identity=37.2093023255814, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24650782, Length=83, Percent_Identity=39.7590361445783, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24654797, Length=81, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45552715, Length=81, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24654810, Length=81, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24654800, Length=81, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24654793, Length=81, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24654807, Length=81, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17136378, Length=81, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24654804, Length=81, Percent_Identity=44.4444444444444, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI17137710, Length=75, Percent_Identity=37.3333333333333, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 13045; Mature: 12914

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAA
CCCEEEECCCCCEECCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEE
IAGMNGQSLGGRSITVNEARPMEARPPRTGGFGGGGGYGGGGDRSGGGGYGGGGGGRSGG
EECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGYGGGSGGGRGGY
CCCCCCCCCCCCCC
>Mature Secondary Structure 
GNKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAA
CCEEEECCCCCEECCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEE
IAGMNGQSLGGRSITVNEARPMEARPPRTGGFGGGGGYGGGGDRSGGGGYGGGGGGRSGG
EECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GGYGGGSGGGRGGY
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]