Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is yxeQ [H]

Identifier: 91786487

GI number: 91786487

Start: 584752

End: 586140

Strand: Reverse

Name: yxeQ [H]

Synonym: Bpro_0581

Alternate gene names: 91786487

Gene position: 586140-584752 (Counterclockwise)

Preceding gene: 91786488

Following gene: 91786486

Centisome position: 11.27

GC content: 71.35

Gene sequence:

>1389_bases
ATGAGTTCTCCCACCGCCCAGCTGGCCGCGTTTGCCGCCAGCCTGACTTTCGAGGCCATTCCCGCGCCGGTGGTGCGCAA
GGCCGAAGACCTGCTGGTCGACTGGTTCGGCTCGGCGCTTGCCGGAAAGGGCGCGCGCCCGGTGGAGACCATCGCGCGCT
TTGCCGCGCAGATGGGGCCGCAGCCAACGCGCAGCGGCAGCGCGCTGCCCGCCGGCGCCTCCGAAGTGCTGATCAACCGC
AGCTGCACCAGCCCCTACCTGGCGGCCATGGTCAACGCGGCCGCCTCGCATGTGGCCGAGCAGGACGACGTCCACAATGG
CTCGGTGTTTCACCCCGCCACGGTGGTGTTTCCGGCGGCGCTGGCGGTGGCCCAGGCGCTGGGCGCCAGCGGCCGGCAGC
TGCTGACGGCCTCGGTGGCAGGCTACGAGGTCGGGATCCGGGTGGGCGAGTTCCTGGGCCGCTCGCATTACAAGGTGTTC
CACACCACCGGAACGGCCGGCACGCTGGCCGCCGCCGCAGCGGTGAGCCATCTGCTGGGGCTCACGGCGCAGCAGATGCG
GCACGCCTTCGGTTTGGCCGGCACGCAGTCGGCCGGCCTGTGGGAATTCCTGCGTACCGCGGCCGACTCCAAGCAGCTGC
ACACCGCGCATGCCGCCGCCGCGGGGCTGATGTCGGCCTACCTGGCGCAGGGCGGCTTTACCGGGGCGGCGCAGATCTTC
GAAGGCCCGCAGGGCATGGCGGCCGGCATGTCGAGCGATGCCGACCCCGCCCGGCTCACCGCGGGTCTCGGCACCCGCTG
GGCCACGGCCGAAACCTCGTTCAAGTACCACGCCTCGTGCCGCCACACGCACCCGGCCGCCGACGCGCTGCTGCAGGTGA
TGCAAACCCACCACCTCCGGCCCGACGACCTGGCCAGCGTGGTCACCCATGTGCATCAGGGCGCCCTTGACGTCCTCGGG
CCGGTGACGCATCCCGCCACCGTGCACCAGAGCAAATTCTCCATGGGCACGGTGCTGGCGCTGGTGGCGCGCTTCAAGCA
CGCCGGCCTGGCCGAGTTCGACCAGCACTTCGACGATGCCGCCACGCAAAGCCTGCGCGACCGTGTGAGCATGGTGCTGG
ACGCCGAAGTGGACCGCGCCTACCCGCAGCGCTGGATTGGTAAGGTCACGGTGACCACGACCGATGGCCGGGTGCTGCAG
GGCCGCGTCGATGAGCCCAAGGGCGACCCCGGCAACACCCTCAGCCGCGAGGAGATCACCGCCAAGGCCTTGCGGCTGGC
GGCTTACAGCAGTGCCGCCGCGCCCGCCGACATGCAGGCAGCCATCGATGGCCTGTGGGCGGTGGCGCAGTGCCCGCGGC
TCGGGCCGCTGCTCGGAGGTGTGGCATGA

Upstream 100 bases:

>100_bases
CGAGCTGGGTCGTGACGAGGCCGCCATCGCCCAACTGTACGCGGCCCAGGCCGTTTAACCCTATGGGCCTTGTACCGATT
GCATTCACAAGGATGACCCG

Downstream 100 bases:

>100_bases
CCACCGTCCCGGCGCCCGCCCTCGCAACCACTATAGCTATCGCACCCGCAGTGGCGCGCGCGCACGCCCTGCTTTTTGTG
CCCGCCAACCGGCCGGAGCG

Product: MmgE/PrpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MSSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGPQPTRSGSALPAGASEVLINR
SCTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAALAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVF
HTTGTAGTLAAAAAVSHLLGLTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIF
EGPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLRPDDLASVVTHVHQGALDVLG
PVTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDAATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQ
GRVDEPKGDPGNTLSREEITAKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA

Sequences:

>Translated_462_residues
MSSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGPQPTRSGSALPAGASEVLINR
SCTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAALAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVF
HTTGTAGTLAAAAAVSHLLGLTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIF
EGPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLRPDDLASVVTHVHQGALDVLG
PVTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDAATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQ
GRVDEPKGDPGNTLSREEITAKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA
>Mature_461_residues
SSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGPQPTRSGSALPAGASEVLINRS
CTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAALAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVFH
TTGTAGTLAAAAAVSHLLGLTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIFE
GPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLRPDDLASVVTHVHQGALDVLGP
VTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDAATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQG
RVDEPKGDPGNTLSREEITAKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA

Specific function: Unknown

COG id: COG2079

COG function: function code R; Uncharacterized protein involved in propionate catabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prpD family [H]

Homologues:

Organism=Homo sapiens, GI310129732, Length=460, Percent_Identity=24.7826086956522, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI310110533, Length=460, Percent_Identity=24.7826086956522, Blast_Score=81, Evalue=3e-15,
Organism=Homo sapiens, GI310123058, Length=460, Percent_Identity=24.7826086956522, Blast_Score=80, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005656 [H]

Pfam domain/function: PF03972 MmgE_PrpD [H]

EC number: NA

Molecular weight: Translated: 48025; Mature: 47894

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGP
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
QPTRSGSALPAGASEVLINRSCTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAA
CCCCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVFHTTGTAGTLAAAAAVSHLLG
HHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
LTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIF
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EGPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLR
CCCCCHHCCCCCCCCHHHHHHCCCCCEECCCCCCEECCCCCCCCHHHHHHHHHHHHHCCC
PDDLASVVTHVHQGALDVLGPVTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQGRVDEPKGDPGNTLSREEIT
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCCCCCCCCCHHHHH
AKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure 
SSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGP
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
QPTRSGSALPAGASEVLINRSCTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAA
CCCCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
LAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVFHTTGTAGTLAAAAAVSHLLG
HHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
LTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIF
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EGPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLR
CCCCCHHCCCCCCCCHHHHHHCCCCCEECCCCCCEECCCCCCCCHHHHHHHHHHHHHCCC
PDDLASVVTHVHQGALDVLGPVTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
ATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQGRVDEPKGDPGNTLSREEIT
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCCCCCCCCCHHHHH
AKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377 [H]