| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yxeQ [H]
Identifier: 91786487
GI number: 91786487
Start: 584752
End: 586140
Strand: Reverse
Name: yxeQ [H]
Synonym: Bpro_0581
Alternate gene names: 91786487
Gene position: 586140-584752 (Counterclockwise)
Preceding gene: 91786488
Following gene: 91786486
Centisome position: 11.27
GC content: 71.35
Gene sequence:
>1389_bases ATGAGTTCTCCCACCGCCCAGCTGGCCGCGTTTGCCGCCAGCCTGACTTTCGAGGCCATTCCCGCGCCGGTGGTGCGCAA GGCCGAAGACCTGCTGGTCGACTGGTTCGGCTCGGCGCTTGCCGGAAAGGGCGCGCGCCCGGTGGAGACCATCGCGCGCT TTGCCGCGCAGATGGGGCCGCAGCCAACGCGCAGCGGCAGCGCGCTGCCCGCCGGCGCCTCCGAAGTGCTGATCAACCGC AGCTGCACCAGCCCCTACCTGGCGGCCATGGTCAACGCGGCCGCCTCGCATGTGGCCGAGCAGGACGACGTCCACAATGG CTCGGTGTTTCACCCCGCCACGGTGGTGTTTCCGGCGGCGCTGGCGGTGGCCCAGGCGCTGGGCGCCAGCGGCCGGCAGC TGCTGACGGCCTCGGTGGCAGGCTACGAGGTCGGGATCCGGGTGGGCGAGTTCCTGGGCCGCTCGCATTACAAGGTGTTC CACACCACCGGAACGGCCGGCACGCTGGCCGCCGCCGCAGCGGTGAGCCATCTGCTGGGGCTCACGGCGCAGCAGATGCG GCACGCCTTCGGTTTGGCCGGCACGCAGTCGGCCGGCCTGTGGGAATTCCTGCGTACCGCGGCCGACTCCAAGCAGCTGC ACACCGCGCATGCCGCCGCCGCGGGGCTGATGTCGGCCTACCTGGCGCAGGGCGGCTTTACCGGGGCGGCGCAGATCTTC GAAGGCCCGCAGGGCATGGCGGCCGGCATGTCGAGCGATGCCGACCCCGCCCGGCTCACCGCGGGTCTCGGCACCCGCTG GGCCACGGCCGAAACCTCGTTCAAGTACCACGCCTCGTGCCGCCACACGCACCCGGCCGCCGACGCGCTGCTGCAGGTGA TGCAAACCCACCACCTCCGGCCCGACGACCTGGCCAGCGTGGTCACCCATGTGCATCAGGGCGCCCTTGACGTCCTCGGG CCGGTGACGCATCCCGCCACCGTGCACCAGAGCAAATTCTCCATGGGCACGGTGCTGGCGCTGGTGGCGCGCTTCAAGCA CGCCGGCCTGGCCGAGTTCGACCAGCACTTCGACGATGCCGCCACGCAAAGCCTGCGCGACCGTGTGAGCATGGTGCTGG ACGCCGAAGTGGACCGCGCCTACCCGCAGCGCTGGATTGGTAAGGTCACGGTGACCACGACCGATGGCCGGGTGCTGCAG GGCCGCGTCGATGAGCCCAAGGGCGACCCCGGCAACACCCTCAGCCGCGAGGAGATCACCGCCAAGGCCTTGCGGCTGGC GGCTTACAGCAGTGCCGCCGCGCCCGCCGACATGCAGGCAGCCATCGATGGCCTGTGGGCGGTGGCGCAGTGCCCGCGGC TCGGGCCGCTGCTCGGAGGTGTGGCATGA
Upstream 100 bases:
>100_bases CGAGCTGGGTCGTGACGAGGCCGCCATCGCCCAACTGTACGCGGCCCAGGCCGTTTAACCCTATGGGCCTTGTACCGATT GCATTCACAAGGATGACCCG
Downstream 100 bases:
>100_bases CCACCGTCCCGGCGCCCGCCCTCGCAACCACTATAGCTATCGCACCCGCAGTGGCGCGCGCGCACGCCCTGCTTTTTGTG CCCGCCAACCGGCCGGAGCG
Product: MmgE/PrpD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MSSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGPQPTRSGSALPAGASEVLINR SCTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAALAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVF HTTGTAGTLAAAAAVSHLLGLTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIF EGPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLRPDDLASVVTHVHQGALDVLG PVTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDAATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQ GRVDEPKGDPGNTLSREEITAKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA
Sequences:
>Translated_462_residues MSSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGPQPTRSGSALPAGASEVLINR SCTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAALAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVF HTTGTAGTLAAAAAVSHLLGLTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIF EGPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLRPDDLASVVTHVHQGALDVLG PVTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDAATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQ GRVDEPKGDPGNTLSREEITAKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA >Mature_461_residues SSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGPQPTRSGSALPAGASEVLINRS CTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAALAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVFH TTGTAGTLAAAAAVSHLLGLTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIFE GPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLRPDDLASVVTHVHQGALDVLGP VTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDAATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQG RVDEPKGDPGNTLSREEITAKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA
Specific function: Unknown
COG id: COG2079
COG function: function code R; Uncharacterized protein involved in propionate catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prpD family [H]
Homologues:
Organism=Homo sapiens, GI310129732, Length=460, Percent_Identity=24.7826086956522, Blast_Score=81, Evalue=3e-15, Organism=Homo sapiens, GI310110533, Length=460, Percent_Identity=24.7826086956522, Blast_Score=81, Evalue=3e-15, Organism=Homo sapiens, GI310123058, Length=460, Percent_Identity=24.7826086956522, Blast_Score=80, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005656 [H]
Pfam domain/function: PF03972 MmgE_PrpD [H]
EC number: NA
Molecular weight: Translated: 48025; Mature: 47894
Theoretical pI: Translated: 7.22; Mature: 7.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGP CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC QPTRSGSALPAGASEVLINRSCTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAA CCCCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH LAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVFHTTGTAGTLAAAAAVSHLLG HHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH LTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIF HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH EGPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLR CCCCCHHCCCCCCCCHHHHHHCCCCCEECCCCCCEECCCCCCCCHHHHHHHHHHHHHCCC PDDLASVVTHVHQGALDVLGPVTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDA HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQGRVDEPKGDPGNTLSREEIT HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCCCCCCCCCHHHHH AKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCC >Mature Secondary Structure SSPTAQLAAFAASLTFEAIPAPVVRKAEDLLVDWFGSALAGKGARPVETIARFAAQMGP CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC QPTRSGSALPAGASEVLINRSCTSPYLAAMVNAAASHVAEQDDVHNGSVFHPATVVFPAA CCCCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH LAVAQALGASGRQLLTASVAGYEVGIRVGEFLGRSHYKVFHTTGTAGTLAAAAAVSHLLG HHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH LTAQQMRHAFGLAGTQSAGLWEFLRTAADSKQLHTAHAAAAGLMSAYLAQGGFTGAAQIF HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH EGPQGMAAGMSSDADPARLTAGLGTRWATAETSFKYHASCRHTHPAADALLQVMQTHHLR CCCCCHHCCCCCCCCHHHHHHCCCCCEECCCCCCEECCCCCCCCHHHHHHHHHHHHHCCC PDDLASVVTHVHQGALDVLGPVTHPATVHQSKFSMGTVLALVARFKHAGLAEFDQHFDDA HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ATQSLRDRVSMVLDAEVDRAYPQRWIGKVTVTTTDGRVLQGRVDEPKGDPGNTLSREEIT HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCCCCCCCCCHHHHH AKALRLAAYSSAAAPADMQAAIDGLWAVAQCPRLGPLLGGVA HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]