Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is livM [C]

Identifier: 91786472

GI number: 91786472

Start: 568610

End: 569845

Strand: Direct

Name: livM [C]

Synonym: Bpro_0566

Alternate gene names: 91786472

Gene position: 568610-569845 (Clockwise)

Preceding gene: 91786471

Following gene: 91786473

Centisome position: 10.93

GC content: 61.49

Gene sequence:

>1236_bases
ATGAACAGCCTCAAGCAGTGGGTGGAACGAAACAGGATGGGCAGCGTGCTGTTGCTGGCGGTGGTTCTGCTGGTGATATT
TCCATTGAGTCTTGACCTGTTTCGCCTGAACCTGGTGGGCAAGTATTTGAGCTACTCATTTGTAGCCCTGGGTCTCGTGA
TGCTCTGGGGCTATGGCGGCGTGCTGAGCCTGGGGCAGGGAGTTTTCTTTGGGCTGGGCGGTTACGGCATGGCCATGTTT
CTCAAGCTCGAAGCCAGCGATCCCGTCACCACCAAGATTCAGTCCACGCCCGGCATTCCCGATTTCATGGACTGGAACCA
GATCACCGCACTGCCGCTGTGGTGGGAACCGTTCCGCTCCTTTCCCCTGACCCTGTTGCTGATCCTGGTTGTGCCTACTT
TTTTGGCTTTTATCATCGGCTATGCCATGTTCAAGCGGCGTGTGGGCGGGGTCTACTTCGCCATCATCACGCAGGCCGTG
GCCCTGATCCTCACGGTGCTCATCATCGGCCAGCAGGGCTACACCGGCGGCGTCAACGGCATGACGGACCTCAAGACCAT
ACTGGGCTGGGATACCCGCACCGACAGCGCCAAATACATCCTGTACTTCGTCACGGCCGGCCTGCTGCTGGGTGCCATCG
TACTGTGCACCTGGATCCAGAAGAGCAAGCTTGGCACGCTGCTGCTGGCCATGCGGGACAAGGAGGACCGGGTGCGTTTC
TCCGGCTACGACGTGGCCATGTTCCGGGTGTTTGCCTTCTGCTTTGCCGCCATGCTGTCTGCTGTTGGGGGCGCCATGTT
CACGCTGCAGGTGGGGTTCATGTCGCCTTCGCTGGTGGGCATTGTGCCGTCGATCGAGATGGTGATTTTTGCCGCGGTCG
GCGGGCGGATGTCGCTGGTGGGCGCGGTGTACGGCGCCTTGCTGGTGAATTTTGGCAAGACCTATTTTTCCGAGAGCTTT
CCCGACCTGTGGCTGTTCCTGATGGCCGCCATGTTCCTCGGCGTGGTGCTGGCTTTTCCGGACGGGCTGGCCGGCGTCTA
CAACAACCGCATCAAGCCCTGGTTGGCCAGGCGCTGGGCGGCGCGCCAGAGCATCCAGGCCCCACCCGCAGGACCCACCG
AATCGCCAGCCATGCCCGTGACCGCAGCAGGCTTGAGTCAGCCCAGCCCGGCAGCCGTGAGCATGGCCCAGCCGCTGCCA
GTCATGCCTTCGGGCCTGAGCGGCCAGCAAACCTGA

Upstream 100 bases:

>100_bases
ACCATCGTGACCATTCTGATGCTGCGCCCCCAAGGCTTGTTTGCGGCCAAGGTGCGGCGCTGATGGCGTCCCAGCAACTG
ATATTCAACCGGAGTTTCCT

Downstream 100 bases:

>100_bases
ATCCGCGGAGCCTGCGATGAAAAATACTGATTTCGTGCTGTCGGTAGAAGACCTGACCGTATCGTTCGACGGCTTCAAGG
CCATCGACAGCCTGAACCTC

Product: inner-membrane translocator

Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]

Alternate protein names: Inner-Membrane Translocator; Branched-Chain Amino Acid ABC Transporter Permease Protein; ABC Transporter Permease Protein; Urea ABC Transporter Permease UrtC; Amino Acid Or Sugar ABC Transport System Permease Protein; Branched-Chain Amino Acid ABC Transporter Permease; Branched Chain Amino Acid ABC Transporter Permease; Branched-Chain Amino Acid Transport System Permease Protein; ABC Transporter ; ABC Transporter; ABC Transporter Permease; Urea ABC Transporter Permease; Permease Of ABC Transporter; ABC Transporter Membrane Spanning Protein; Urea Or Short-Chain Amide ABC Transporter Permease Protein; Amide-Urea Transport System Permease Protein; Branched Chain Amino Acid ABC Transporter Permease Protein; Amide-Urea Transporter Permease Protein; Transmembrane Component Of ABC Transporter; High-Affinity Branched-Chain Amino Acid Transport System; Urea/Short Chain-Amide ABC Transporter Permease Protein; Urea ABC Transporter Permease Protein; ABC Transporter Related Protein; ABC Transporter Membrane Protein; Branched-Chain Amino Acid Transporter; ABC-Type Urea Transport System Permease Protein II; Urea Transport System Permease Protein; ABC Transporter Inner-Membrane Translocator; ABC-Type Transport System Permease Protein; Amino Acid ABC Transporter Permease Protein; ABC Transporter-Like Protein; Integral Membrane Protein; Urea ABC Transporter Inner-Membrane Subunit UrtC; ABC Branched Amino Acid Transporter Permease Component; Branched-Chain Amino Acid Transport System Permease; Amino Acid/Amide ABC Transporter Membrane HAAT Family; Permease Protein Of ABC Transporter; Urea Transport System Permease Component Protein; Permease Component Of ABC Transporter; Urea Or Short-Chain Amide ABC Transporter; Permease Transporter Transmembrane Protein; Urea ABC Transport Permease Component UrtC

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MNSLKQWVERNRMGSVLLLAVVLLVIFPLSLDLFRLNLVGKYLSYSFVALGLVMLWGYGGVLSLGQGVFFGLGGYGMAMF
LKLEASDPVTTKIQSTPGIPDFMDWNQITALPLWWEPFRSFPLTLLLILVVPTFLAFIIGYAMFKRRVGGVYFAIITQAV
ALILTVLIIGQQGYTGGVNGMTDLKTILGWDTRTDSAKYILYFVTAGLLLGAIVLCTWIQKSKLGTLLLAMRDKEDRVRF
SGYDVAMFRVFAFCFAAMLSAVGGAMFTLQVGFMSPSLVGIVPSIEMVIFAAVGGRMSLVGAVYGALLVNFGKTYFSESF
PDLWLFLMAAMFLGVVLAFPDGLAGVYNNRIKPWLARRWAARQSIQAPPAGPTESPAMPVTAAGLSQPSPAAVSMAQPLP
VMPSGLSGQQT

Sequences:

>Translated_411_residues
MNSLKQWVERNRMGSVLLLAVVLLVIFPLSLDLFRLNLVGKYLSYSFVALGLVMLWGYGGVLSLGQGVFFGLGGYGMAMF
LKLEASDPVTTKIQSTPGIPDFMDWNQITALPLWWEPFRSFPLTLLLILVVPTFLAFIIGYAMFKRRVGGVYFAIITQAV
ALILTVLIIGQQGYTGGVNGMTDLKTILGWDTRTDSAKYILYFVTAGLLLGAIVLCTWIQKSKLGTLLLAMRDKEDRVRF
SGYDVAMFRVFAFCFAAMLSAVGGAMFTLQVGFMSPSLVGIVPSIEMVIFAAVGGRMSLVGAVYGALLVNFGKTYFSESF
PDLWLFLMAAMFLGVVLAFPDGLAGVYNNRIKPWLARRWAARQSIQAPPAGPTESPAMPVTAAGLSQPSPAAVSMAQPLP
VMPSGLSGQQT
>Mature_411_residues
MNSLKQWVERNRMGSVLLLAVVLLVIFPLSLDLFRLNLVGKYLSYSFVALGLVMLWGYGGVLSLGQGVFFGLGGYGMAMF
LKLEASDPVTTKIQSTPGIPDFMDWNQITALPLWWEPFRSFPLTLLLILVVPTFLAFIIGYAMFKRRVGGVYFAIITQAV
ALILTVLIIGQQGYTGGVNGMTDLKTILGWDTRTDSAKYILYFVTAGLLLGAIVLCTWIQKSKLGTLLLAMRDKEDRVRF
SGYDVAMFRVFAFCFAAMLSAVGGAMFTLQVGFMSPSLVGIVPSIEMVIFAAVGGRMSLVGAVYGALLVNFGKTYFSESF
PDLWLFLMAAMFLGVVLAFPDGLAGVYNNRIKPWLARRWAARQSIQAPPAGPTESPAMPVTAAGLSQPSPAAVSMAQPLP
VMPSGLSGQQT

Specific function: Part Of The Binding-Protein-Dependent Transport System For Branched-Chain Amino Acids. Probably Responsible For The Translocation Of The Substrates Across The Membrane. [C]

COG id: COG4177

COG function: function code E; ABC-type branched-chain amino acid transport system, permease component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44606; Mature: 44606

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLKQWVERNRMGSVLLLAVVLLVIFPLSLDLFRLNLVGKYLSYSFVALGLVMLWGYGG
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VLSLGQGVFFGLGGYGMAMFLKLEASDPVTTKIQSTPGIPDFMDWNQITALPLWWEPFRS
HHHHCCCHHEECCHHCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEECCCCHHHHHH
FPLTLLLILVVPTFLAFIIGYAMFKRRVGGVYFAIITQAVALILTVLIIGQQGYTGGVNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
MTDLKTILGWDTRTDSAKYILYFVTAGLLLGAIVLCTWIQKSKLGTLLLAMRDKEDRVRF
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEE
SGYDVAMFRVFAFCFAAMLSAVGGAMFTLQVGFMSPSLVGIVPSIEMVIFAAVGGRMSLV
CCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHH
GAVYGALLVNFGKTYFSESFPDLWLFLMAAMFLGVVLAFPDGLAGVYNNRIKPWLARRWA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHH
ARQSIQAPPAGPTESPAMPVTAAGLSQPSPAAVSMAQPLPVMPSGLSGQQT
HHHCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNSLKQWVERNRMGSVLLLAVVLLVIFPLSLDLFRLNLVGKYLSYSFVALGLVMLWGYGG
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VLSLGQGVFFGLGGYGMAMFLKLEASDPVTTKIQSTPGIPDFMDWNQITALPLWWEPFRS
HHHHCCCHHEECCHHCEEEEEEEECCCCCEEEECCCCCCCCCCCCCCEEECCCCHHHHHH
FPLTLLLILVVPTFLAFIIGYAMFKRRVGGVYFAIITQAVALILTVLIIGQQGYTGGVNG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
MTDLKTILGWDTRTDSAKYILYFVTAGLLLGAIVLCTWIQKSKLGTLLLAMRDKEDRVRF
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEE
SGYDVAMFRVFAFCFAAMLSAVGGAMFTLQVGFMSPSLVGIVPSIEMVIFAAVGGRMSLV
CCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHH
GAVYGALLVNFGKTYFSESFPDLWLFLMAAMFLGVVLAFPDGLAGVYNNRIKPWLARRWA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHH
ARQSIQAPPAGPTESPAMPVTAAGLSQPSPAAVSMAQPLPVMPSGLSGQQT
HHHCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]

Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA