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The map label for this gene is ydfH [H]

Identifier: 91786455

GI number: 91786455

Start: 548183

End: 548950

Strand: Reverse

Name: ydfH [H]

Synonym: Bpro_0549

Alternate gene names: 91786455

Gene position: 548950-548183 (Counterclockwise)

Preceding gene: 91786456

Following gene: 91786454

Centisome position: 10.56

GC content: 63.8

Gene sequence:

>768_bases
GTGACACCTTCGGGTGAAGATGCACTCGATAGAATGCAGTCACCCTCCTCCACCAATCAGACCGACATGACCAGCACGCG
CCAGTCCACGAGCCGCCTCGACCGGGAAAACACGATCGATGCGATCTATGAAAGGATCTATGTCGCCATTCTGGAACACC
GCCTGCACCCCGGCACCAAGCTGGGCGAGGAAAGGCTGGCCGACATCTTTGGTACCAGCCGGGCGCGCATCCGCGAGGTG
CTGGCCCGCCTGGCGCACGAGCAGATCGTCGAGCTCTACCCACAGCGCGGAGCCTACCTGGCCAAGCCCTCCATCGAGCA
GGCGCGGGACGTGTTCGAGGCGCGCCGGCTGATCGAGCCCGCCGTGCTCAAGCGCCTGATCGACACCCTCACCCCGGAGA
AAATTGCCCGCCTGCGGCAACACCAGGAACTGGAGCTCGATGCCCGCCGGCGCGAAGACAAGCGCACCGTGATCCGGTTG
TCCGGCGAATTCCACACGTTGACAGCGGAGCTTGCGGGCAATTCGGCACTGGCCAGAAGCATGCGCGAACTCTGCATGCT
CACCTGCCTCATCATCTTCCTGTACGACGCGCCCACGGCCAGCAGTTGCCGTGCCGACGAGCACACGGTGATCGTCGACG
CGATCGCCAAGCGCGACCGGGTACGCGCCGAAAAACTCATGCTGGATCACCTGCACCACATCGAGCACAGCCTCAAGCTC
GACAGCACCGCCGGGGAAGCGGATCTCGAGGCGATTTTCGGCAGCTGA

Upstream 100 bases:

>100_bases
CGCTGCTGGACACCGTGAGCACCACCGTCTGGGGCATGCTGCGCGCTGCCGGCGTTCCATCAGCCAACATCACCGGGTGG
GGGAGGCTTTTCCAATGCTC

Downstream 100 bases:

>100_bases
CCCGGCGTACCCCCGCGCCCACGCTGCCCGCAGCGCTCCGCCCACCCACGCGGCAGGGGTCGGCCCTGCTGCCATCTCTC
GCCCGGACTCCGATTCCGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTPSGEDALDRMQSPSSTNQTDMTSTRQSTSRLDRENTIDAIYERIYVAILEHRLHPGTKLGEERLADIFGTSRARIREV
LARLAHEQIVELYPQRGAYLAKPSIEQARDVFEARRLIEPAVLKRLIDTLTPEKIARLRQHQELELDARRREDKRTVIRL
SGEFHTLTAELAGNSALARSMRELCMLTCLIIFLYDAPTASSCRADEHTVIVDAIAKRDRVRAEKLMLDHLHHIEHSLKL
DSTAGEADLEAIFGS

Sequences:

>Translated_255_residues
MTPSGEDALDRMQSPSSTNQTDMTSTRQSTSRLDRENTIDAIYERIYVAILEHRLHPGTKLGEERLADIFGTSRARIREV
LARLAHEQIVELYPQRGAYLAKPSIEQARDVFEARRLIEPAVLKRLIDTLTPEKIARLRQHQELELDARRREDKRTVIRL
SGEFHTLTAELAGNSALARSMRELCMLTCLIIFLYDAPTASSCRADEHTVIVDAIAKRDRVRAEKLMLDHLHHIEHSLKL
DSTAGEADLEAIFGS
>Mature_254_residues
TPSGEDALDRMQSPSSTNQTDMTSTRQSTSRLDRENTIDAIYERIYVAILEHRLHPGTKLGEERLADIFGTSRARIREVL
ARLAHEQIVELYPQRGAYLAKPSIEQARDVFEARRLIEPAVLKRLIDTLTPEKIARLRQHQELELDARRREDKRTVIRLS
GEFHTLTAELAGNSALARSMRELCMLTCLIIFLYDAPTASSCRADEHTVIVDAIAKRDRVRAEKLMLDHLHHIEHSLKLD
STAGEADLEAIFGS

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=26.4423076923077, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28962; Mature: 28831

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSGEDALDRMQSPSSTNQTDMTSTRQSTSRLDRENTIDAIYERIYVAILEHRLHPGTK
CCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCH
LGEERLADIFGTSRARIREVLARLAHEQIVELYPQRGAYLAKPSIEQARDVFEARRLIEP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHH
AVLKRLIDTLTPEKIARLRQHQELELDARRREDKRTVIRLSGEFHTLTAELAGNSALARS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCHHHHHH
MRELCMLTCLIIFLYDAPTASSCRADEHTVIVDAIAKRDRVRAEKLMLDHLHHIEHSLKL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSTAGEADLEAIFGS
CCCCCHHHHHHHCCC
>Mature Secondary Structure 
TPSGEDALDRMQSPSSTNQTDMTSTRQSTSRLDRENTIDAIYERIYVAILEHRLHPGTK
CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCH
LGEERLADIFGTSRARIREVLARLAHEQIVELYPQRGAYLAKPSIEQARDVFEARRLIEP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHH
AVLKRLIDTLTPEKIARLRQHQELELDARRREDKRTVIRLSGEFHTLTAELAGNSALARS
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHCCHHHHHH
MRELCMLTCLIIFLYDAPTASSCRADEHTVIVDAIAKRDRVRAEKLMLDHLHHIEHSLKL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DSTAGEADLEAIFGS
CCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]