| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786429
Identifier: 91786429
GI number: 91786429
Start: 524986
End: 525540
Strand: Direct
Name: 91786429
Synonym: Bpro_0520
Alternate gene names: NA
Gene position: 524986-525540 (Clockwise)
Preceding gene: 91786427
Following gene: 91786430
Centisome position: 10.1
GC content: 55.86
Gene sequence:
>555_bases ATGTCACGACTTCACACTCCCGCTTCAATCGGAGCTTCGCCTGTTGCTGCACAGGCTGCGCTTAATGCGATCGACAAGCA ACTTGGATTGGTACCTAACCTGTTTCGCGTCGTTGCAAACAGCCCGGCTGCGTTACAAGGGTACGTTGATTTCAACAGCG CGGCGTCTAAGGGGAAACTCAGCGCCCAAACACGCGAACGCATTGCATTGGCAGTTGCAGAGATCAACGGCTGTGGCTAC TGCCTAGCAGCCCATACCTACTTGGCAGGCAACGTCGCCAAGCTCGACGAGGCTGAGATTGTCGCCAACCGTAAGGGCGC ATCGAATGATCCCAAGGCTGATAAGGCTGTGCGATTCGCCGCGCAGGTGGTGCATAACCGCGGCCATGTGAGCGATAACG AACTGGCGACGGTACGCGAAGCCGGCTATGACGACGCCGAGATTGTCGAAATAGTGCTTGCCGTTGCGCTCAATACCTTT ACCAACTACCTCAACGAGGTAGCTGGAACCCAGATTGATTTTCCAGCCACTGCACCTCTGGTTGCAGCGTCCTGA
Upstream 100 bases:
>100_bases GTGATTATCAAATGTCCCGGCTTATCAAGCAAGCCAAGAAGATCCATCATTACACCACGCAAAAAAAGCGCCATTCTCAA CTGACGAAAAGGATTTCCGG
Downstream 100 bases:
>100_bases GAACGATCTGCCCATTTGCCAATCGACCCATTTTTAAGAACACAGATTATGCTGAACCCTGCACTCCTAAACCTCCCGTC CACTTCATACCATTTCACGG
Product: alkylhydroperoxidase AhpD
Products: NA
Alternate protein names: Carboxymuconolactone Decarboxylase; Alkylhydroperoxidase Like Protein AhpD Family; Alkylhydroperoxidase AhpD Core; Peroxidase-Related; Alkylhydroperoxidase AhpD Family Core Domain Protein; Alkylhydroperoxidase AhpD Domain Protein; Carboxymuconolactone Decarboxylase Family Protein; Alkylhydroperoxidase AhpD; Macrophage Infectivity Potentiator-Related Protein; Peroxidase; Alkylhydroperoxidase-Like Protein AhpD Family; Alpha/Beta Hydrolase; 24 KDa Macrophage-Induced Protein; Carboxymuconolactone Decarboxylase Family; 4-Carboxymuconolactone Decarboxylase; Macrophage Infectivity Potentiator Protein; Alkylhydroperoxidase-Like Protein; Mip Protein; Ypothetical Protein SMU.; MIP-(Macrophage Infectivity Potentiator)-Like Protein; AhpD-Like Alkylhydroperoxidase; Antioxydant Protein; Alkylhydroperoxidase AhpD Family Protein; AhpD Family Alkylhydroperoxidase; Alkylhydroperoxidase AhpD Family Core Domain Protein MED; Peroxidase-Like Protein; Alkylhydroperoxidase Like Protein AhpD Family Protein
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MSRLHTPASIGASPVAAQAALNAIDKQLGLVPNLFRVVANSPAALQGYVDFNSAASKGKLSAQTRERIALAVAEINGCGY CLAAHTYLAGNVAKLDEAEIVANRKGASNDPKADKAVRFAAQVVHNRGHVSDNELATVREAGYDDAEIVEIVLAVALNTF TNYLNEVAGTQIDFPATAPLVAAS
Sequences:
>Translated_184_residues MSRLHTPASIGASPVAAQAALNAIDKQLGLVPNLFRVVANSPAALQGYVDFNSAASKGKLSAQTRERIALAVAEINGCGY CLAAHTYLAGNVAKLDEAEIVANRKGASNDPKADKAVRFAAQVVHNRGHVSDNELATVREAGYDDAEIVEIVLAVALNTF TNYLNEVAGTQIDFPATAPLVAAS >Mature_183_residues SRLHTPASIGASPVAAQAALNAIDKQLGLVPNLFRVVANSPAALQGYVDFNSAASKGKLSAQTRERIALAVAEINGCGYC LAAHTYLAGNVAKLDEAEIVANRKGASNDPKADKAVRFAAQVVHNRGHVSDNELATVREAGYDDAEIVEIVLAVALNTFT NYLNEVAGTQIDFPATAPLVAAS
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19170; Mature: 19039
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLHTPASIGASPVAAQAALNAIDKQLGLVPNLFRVVANSPAALQGYVDFNSAASKGKL CCCCCCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCC SAQTRERIALAVAEINGCGYCLAAHTYLAGNVAKLDEAEIVANRKGASNDPKADKAVRFA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHCCCCCCCCCCHHHHHHHH AQVVHNRGHVSDNELATVREAGYDDAEIVEIVLAVALNTFTNYLNEVAGTQIDFPATAPL HHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC VAAS EECC >Mature Secondary Structure SRLHTPASIGASPVAAQAALNAIDKQLGLVPNLFRVVANSPAALQGYVDFNSAASKGKL CCCCCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCC SAQTRERIALAVAEINGCGYCLAAHTYLAGNVAKLDEAEIVANRKGASNDPKADKAVRFA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHHHHHCCCCCCCCCCHHHHHHHH AQVVHNRGHVSDNELATVREAGYDDAEIVEIVLAVALNTFTNYLNEVAGTQIDFPATAPL HHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC VAAS EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA