| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is purU [H]
Identifier: 91786348
GI number: 91786348
Start: 455166
End: 456014
Strand: Reverse
Name: purU [H]
Synonym: Bpro_0438
Alternate gene names: 91786348
Gene position: 456014-455166 (Counterclockwise)
Preceding gene: 91786351
Following gene: 91786347
Centisome position: 8.77
GC content: 61.13
Gene sequence:
>849_bases ATGAACCACGCATATATCCTGACCCTGTCCTGCCCGGACCGTAGGGGCATTGTTCACGCCGTTTCCGGTTTTTTGCTGCA GAACGGCGGCAACATTGAAGAAGCCGCCCAGTACAACGACCATGACACGGGCCTGTTTTTCATGCGGGTGCAGTTTGCCT GCGACCAACTGACGCACGAGGAGCTGTCGCAGCAGCTCAAGGGCTTTGCCGAGCCCTTCCAGATGAACTGGAAACTGCAC GCGACCACGCAACCGATGCGCACCGTCATCATGGTCAGCAAGGAAGGCCATTGCCTGAACGACCTGCTGTTTCGCTGCAA GTCGGGCCTGCTGCCGCTGGACGTCCGCGCCATCGTGTCCAACCACCGGGAGTTCTACCAGCTGGCGGCCAGCTACAACA TTCCTTTTCACCATTTCCCGGTGACCGCCGCGAGCAAAGCCCAGGTCGAGGACAAGCAGCTGGAAATCATCGAGTCGGAG GGCGCCGAGCTGGTGGTGCTGGCGCGCTACATGCAGATCCTTTCCAACGACCTGTGCCGCAAACTGGCTGGCCGCGCGAT CAACATCCACCACTCCTTCCTGCCCAGCTTCAAGGGCGCCAAGCCTTACTACCAGGCGCATGACCGCGGCGTGAAACTGA TAGGCGCGACCGCCCACTATGTGACGGGCGACCTGGACGAAGGCCCGATCATCGAACAGGACGTGGCGCGCGTGGACCAC AGCAAGACCGTCGAAGACCTGACGGCCATGGGCCGCGACACCGAAAGCCAGGTGCTGGCGCGCGCCGTCAAGTGGCACAG CGAGCATCGCGTGCTGCTCAACGGCCACAAGACCGTGATTTTCAAGTAA
Upstream 100 bases:
>100_bases AAGGTGTAATCTTGCATCCGGTACTTTTGCGCCTCCCCGGCACCCGGGATTCCGGCCGGATCAGGCGATCGGTGGCGGAG CCTGCGACAATTCATCCCCT
Downstream 100 bases:
>100_bases CCACCATGGCCGCGCCGGCGAGAATTCCACCGATTCAGTGCCTGCTGACGTTTGAAGCGCTGGCACGGCTGCGCAGCGTG ACCCAGGCGGCCGAGGAACT
Product: formyltetrahydrofolate deformylase
Products: NA
Alternate protein names: Formyl-FH(4) hydrolase [H]
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MNHAYILTLSCPDRRGIVHAVSGFLLQNGGNIEEAAQYNDHDTGLFFMRVQFACDQLTHEELSQQLKGFAEPFQMNWKLH ATTQPMRTVIMVSKEGHCLNDLLFRCKSGLLPLDVRAIVSNHREFYQLAASYNIPFHHFPVTAASKAQVEDKQLEIIESE GAELVVLARYMQILSNDLCRKLAGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHYVTGDLDEGPIIEQDVARVDH SKTVEDLTAMGRDTESQVLARAVKWHSEHRVLLNGHKTVIFK
Sequences:
>Translated_282_residues MNHAYILTLSCPDRRGIVHAVSGFLLQNGGNIEEAAQYNDHDTGLFFMRVQFACDQLTHEELSQQLKGFAEPFQMNWKLH ATTQPMRTVIMVSKEGHCLNDLLFRCKSGLLPLDVRAIVSNHREFYQLAASYNIPFHHFPVTAASKAQVEDKQLEIIESE GAELVVLARYMQILSNDLCRKLAGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHYVTGDLDEGPIIEQDVARVDH SKTVEDLTAMGRDTESQVLARAVKWHSEHRVLLNGHKTVIFK >Mature_282_residues MNHAYILTLSCPDRRGIVHAVSGFLLQNGGNIEEAAQYNDHDTGLFFMRVQFACDQLTHEELSQQLKGFAEPFQMNWKLH ATTQPMRTVIMVSKEGHCLNDLLFRCKSGLLPLDVRAIVSNHREFYQLAASYNIPFHHFPVTAASKAQVEDKQLEIIESE GAELVVLARYMQILSNDLCRKLAGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHYVTGDLDEGPIIEQDVARVDH SKTVEDLTAMGRDTESQVLARAVKWHSEHRVLLNGHKTVIFK
Specific function: Produces Formate From Formyl-Tetrahydrofolate. Provides The Major Source Of Formate For The Purt-Dependent Synthesis Of 5'-Phosphoribosyl-N-Formylglycinamide (Fgar) During Aerobic Growth. Has A Role In Regulating The One-Carbon Pool. [C]
COG id: COG0788
COG function: function code F; Formyltetrahydrofolate hydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=119, Percent_Identity=35.2941176470588, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI209869995, Length=119, Percent_Identity=35.2941176470588, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI209869993, Length=119, Percent_Identity=35.2941176470588, Blast_Score=77, Evalue=1e-14, Organism=Escherichia coli, GI1787483, Length=279, Percent_Identity=38.3512544802867, Blast_Score=204, Evalue=7e-54, Organism=Escherichia coli, GI1788846, Length=189, Percent_Identity=30.6878306878307, Blast_Score=91, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17567511, Length=162, Percent_Identity=36.4197530864198, Blast_Score=93, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR004810 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =3.5.1.10 [H]
Molecular weight: Translated: 31814; Mature: 31814
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHAYILTLSCPDRRGIVHAVSGFLLQNGGNIEEAAQYNDHDTGLFFMRVQFACDQLTHE CCCEEEEEEECCCCCCHHHHHHHHHEECCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHH ELSQQLKGFAEPFQMNWKLHATTQPMRTVIMVSKEGHCLNDLLFRCKSGLLPLDVRAIVS HHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHH NHREFYQLAASYNIPFHHFPVTAASKAQVEDKQLEIIESEGAELVVLARYMQILSNDLCR CHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHEECCCCCCEEHHHHHHHHHHHHHHH KLAGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHYVTGDLDEGPIIEQDVARVDH HHCCCEEEEEHHHCCCCCCCCCHHHHCCCCEEEEEEEEHEEECCCCCCCCCHHHHHHCCC SKTVEDLTAMGRDTESQVLARAVKWHSEHRVLLNGHKTVIFK HHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEC >Mature Secondary Structure MNHAYILTLSCPDRRGIVHAVSGFLLQNGGNIEEAAQYNDHDTGLFFMRVQFACDQLTHE CCCEEEEEEECCCCCCHHHHHHHHHEECCCCHHHHHHCCCCCCCEEEEEHHHHHHHHHHH ELSQQLKGFAEPFQMNWKLHATTQPMRTVIMVSKEGHCLNDLLFRCKSGLLPLDVRAIVS HHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHH NHREFYQLAASYNIPFHHFPVTAASKAQVEDKQLEIIESEGAELVVLARYMQILSNDLCR CHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHEECCCCCCEEHHHHHHHHHHHHHHH KLAGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHYVTGDLDEGPIIEQDVARVDH HHCCCEEEEEHHHCCCCCCCCCHHHHCCCCEEEEEEEEHEEECCCCCCCCCHHHHHHCCC SKTVEDLTAMGRDTESQVLARAVKWHSEHRVLLNGHKTVIFK HHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7543100 [H]