| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786317
Identifier: 91786317
GI number: 91786317
Start: 420252
End: 421421
Strand: Reverse
Name: 91786317
Synonym: Bpro_0407
Alternate gene names: NA
Gene position: 421421-420252 (Counterclockwise)
Preceding gene: 91786323
Following gene: 91786310
Centisome position: 8.1
GC content: 58.38
Gene sequence:
>1170_bases ATGATGTTAGTTAGAAAAACACAAGAAACCGTATTACAGGCCCTATCGCGTCAAGCCTCCGTCGCGCTGATTGGCCCGCG CCAAGTGGGCAAAACCACCTTGGCGCTCGAAATTGGCAAACAGCAAAACGCCCTTTACCTTGACCTTGAAGCTATTGAAG AGCGCGACAAGCTGAGCAACCCGACAGCCTTTTTGTCTGCTTATGAAGACCGGCTGGTCATCTTGGACGAAATTCACCGC GTGCCCGACCTGTTTTTAACCCTGCGCGGCCTGATTGACCAAGGCCGACGCCATGGCCAGCGTACCGGGCGCTTCTTGTT GCTCGGCTCGGCTTCGCTGGATTTGATGCGCCAAAGTGGCGAGAGCCTGGCCGGGCGCATCAGCTATATCGACATGACGC CCTTGAGCGTTCTGGAAGTGCCAACCGATGCAATTGAGGCACTCTGGATACGCGGCGGCTTCCCCGACAGCTTTCTCGCA CAGGACGACCGGCAAAGCCTGGACTGGCGCAAAGACCTGCTCAGGACCTACCTGGAGCGTGACGTGCCCATGTTTGGCTC GCGAATTCCGGCCGAAACCCTGCGCCGCTTTTGGACTATGCTGGCGCACAACCAGGGCGCCTTGCACAACGCCTCTCGCC TGGCCGCAGGCCTGGAAGTAAGCAGCCAGACAGTCAGCCGCTACACCGATTTGCTGGTTGATTTGTTGCTGGTGCGCAGG CTGCAGCCTTACCACGCCAATGTAGGCAAACGGCTGGTGAAGTCGCCCAAGGTCTACATCCGTGACAGCGGCTTGCTGCA TGCACTGCTCAACATCGCGGTTAGAGACGCCTTGCTAGGACACCCCGTGGTGGGCGCTAGCTGGGAGGGTTTTGTGATCG AAAACCTGATTAACGCCGCGCCCGCCTTTACGGTGCCGGGTTTTTATCGCACCTCAGGTGGCGCTGAAATCGATCTGCTT TTAGAGCTTCCGGGCGGTGAACTCTGGGCGATCGAAGTCAAGCGCAGCCGCGCCGCCAAACCTGCCAGAGGGTTTTACGA AGCCTGCGAAGACTTGAAGCCCGCCAAGCGCTTTGTGGTTCACGGCGGGCTTGAGCGTTACCCCATTAGTGCGGATGTTG AAGCGATTGGGATGCGGGAATTGGCGGAGACCTTGTCGCAGCTGGCGTAA
Upstream 100 bases:
>100_bases TTCGAGAAGTATTCGAGTTCCTGCCTGCCCTGTTTGCCTCATTGCCGGTGCCACCGCAGATGATAACCATGAAAATTAAC CACTATATGGTAAATTTGCA
Downstream 100 bases:
>100_bases GTCAAACGGCAAAATCCAGAACGCCACGGTGATGCAATCGCCAGCCTTAGCCCGCCAACAGCGCCGCGTTGCCGCCCGCC GCCGTCGTATTGACCGTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MMLVRKTQETVLQALSRQASVALIGPRQVGKTTLALEIGKQQNALYLDLEAIEERDKLSNPTAFLSAYEDRLVILDEIHR VPDLFLTLRGLIDQGRRHGQRTGRFLLLGSASLDLMRQSGESLAGRISYIDMTPLSVLEVPTDAIEALWIRGGFPDSFLA QDDRQSLDWRKDLLRTYLERDVPMFGSRIPAETLRRFWTMLAHNQGALHNASRLAAGLEVSSQTVSRYTDLLVDLLLVRR LQPYHANVGKRLVKSPKVYIRDSGLLHALLNIAVRDALLGHPVVGASWEGFVIENLINAAPAFTVPGFYRTSGGAEIDLL LELPGGELWAIEVKRSRAAKPARGFYEACEDLKPAKRFVVHGGLERYPISADVEAIGMRELAETLSQLA
Sequences:
>Translated_389_residues MMLVRKTQETVLQALSRQASVALIGPRQVGKTTLALEIGKQQNALYLDLEAIEERDKLSNPTAFLSAYEDRLVILDEIHR VPDLFLTLRGLIDQGRRHGQRTGRFLLLGSASLDLMRQSGESLAGRISYIDMTPLSVLEVPTDAIEALWIRGGFPDSFLA QDDRQSLDWRKDLLRTYLERDVPMFGSRIPAETLRRFWTMLAHNQGALHNASRLAAGLEVSSQTVSRYTDLLVDLLLVRR LQPYHANVGKRLVKSPKVYIRDSGLLHALLNIAVRDALLGHPVVGASWEGFVIENLINAAPAFTVPGFYRTSGGAEIDLL LELPGGELWAIEVKRSRAAKPARGFYEACEDLKPAKRFVVHGGLERYPISADVEAIGMRELAETLSQLA >Mature_389_residues MMLVRKTQETVLQALSRQASVALIGPRQVGKTTLALEIGKQQNALYLDLEAIEERDKLSNPTAFLSAYEDRLVILDEIHR VPDLFLTLRGLIDQGRRHGQRTGRFLLLGSASLDLMRQSGESLAGRISYIDMTPLSVLEVPTDAIEALWIRGGFPDSFLA QDDRQSLDWRKDLLRTYLERDVPMFGSRIPAETLRRFWTMLAHNQGALHNASRLAAGLEVSSQTVSRYTDLLVDLLLVRR LQPYHANVGKRLVKSPKVYIRDSGLLHALLNIAVRDALLGHPVVGASWEGFVIENLINAAPAFTVPGFYRTSGGAEIDLL LELPGGELWAIEVKRSRAAKPARGFYEACEDLKPAKRFVVHGGLERYPISADVEAIGMRELAETLSQLA
Specific function: Unknown
COG id: COG1373
COG function: function code R; Predicted ATPase (AAA+ superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 [H]
Pfam domain/function: PF08279 HTH_11 [H]
EC number: NA
Molecular weight: Translated: 43299; Mature: 43299
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLVRKTQETVLQALSRQASVALIGPRQVGKTTLALEIGKQQNALYLDLEAIEERDKLSN CCEEEHHHHHHHHHHHCCCCEEEECCHHHCCEEEEEEECCCCCEEEEEHHHHHHHHHCCC PTAFLSAYEDRLVILDEIHRVPDLFLTLRGLIDQGRRHGQRTGRFLLLGSASLDLMRQSG CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCC ESLAGRISYIDMTPLSVLEVPTDAIEALWIRGGFPDSFLAQDDRQSLDWRKDLLRTYLER HHHHCEEEEEECCCHHHHHCCHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHC DVPMFGSRIPAETLRRFWTMLAHNQGALHNASRLAAGLEVSSQTVSRYTDLLVDLLLVRR CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LQPYHANVGKRLVKSPKVYIRDSGLLHALLNIAVRDALLGHPVVGASWEGFVIENLINAA CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC PAFTVPGFYRTSGGAEIDLLLELPGGELWAIEVKRSRAAKPARGFYEACEDLKPAKRFVV CCCCCCCCEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHH HGGLERYPISADVEAIGMRELAETLSQLA CCCCCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMLVRKTQETVLQALSRQASVALIGPRQVGKTTLALEIGKQQNALYLDLEAIEERDKLSN CCEEEHHHHHHHHHHHCCCCEEEECCHHHCCEEEEEEECCCCCEEEEEHHHHHHHHHCCC PTAFLSAYEDRLVILDEIHRVPDLFLTLRGLIDQGRRHGQRTGRFLLLGSASLDLMRQSG CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCC ESLAGRISYIDMTPLSVLEVPTDAIEALWIRGGFPDSFLAQDDRQSLDWRKDLLRTYLER HHHHCEEEEEECCCHHHHHCCHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHC DVPMFGSRIPAETLRRFWTMLAHNQGALHNASRLAAGLEVSSQTVSRYTDLLVDLLLVRR CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH LQPYHANVGKRLVKSPKVYIRDSGLLHALLNIAVRDALLGHPVVGASWEGFVIENLINAA CCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCC PAFTVPGFYRTSGGAEIDLLLELPGGELWAIEVKRSRAAKPARGFYEACEDLKPAKRFVV CCCCCCCCEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHH HGGLERYPISADVEAIGMRELAETLSQLA CCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]