| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is glxR [C]
Identifier: 91786304
GI number: 91786304
Start: 406162
End: 407076
Strand: Reverse
Name: glxR [C]
Synonym: Bpro_0394
Alternate gene names: 91786304
Gene position: 407076-406162 (Counterclockwise)
Preceding gene: 91786305
Following gene: 91786300
Centisome position: 7.83
GC content: 65.46
Gene sequence:
>915_bases GTGAGCAGCATCAACACCAAAACCTACGAACCTTCTTCCCCGCGCAAAGTTGCATTCCTCGGCCTGGGCGTGATGGGCTA TCCCATGGCCGGTCATCTGGCGCTCGCCGGCCATCAAGTCACCGTGTACAACCGCAGCCCCGCCAGGTCGACGGCCTGGT GCGCTGAATTTGCGGCCACGGCCCGGCCATCCAGTGCGACCGTGCCCCGCCTGGCAGCGGCCGGGGCCGATGTGGTGTTC AGCTGCGTCGGCAACGATGATGACCTGCGTTCCGTCACGCTGGGCCCGGACGGTGCCTTTGCGGGCATGAAGCCCGGCGC GGTGATGGTGGACCACACCACCGCCTCGGCCGATGTTGCCCGCGAGCTCCATGCGGCTGCACAACAGCTCGGGCTGCACT TCATTGACGCGCCGGTGTCCGGTGGCCAGGCGGGCGCACAGAACGGCATCCTTACGGTGATGTGCGGCGGCGATGCGGCG GCGTTCGAGAGCATCAAGCCGGCCGGCATGGCCTTCTCCAGGGCTTTCACACTGATGGGCGACAGCGGCGCGGGCCAGCT CACCAAGATGGTCAACCAGGTCTGCATTGCCGGCCTGGTGCAGGGCCTGAGTGAAGCCATCGCCTTTGGCCAGAAAGCAG GGCTGGACATGAACCAGGTACTCGACGTGATCGGCAAGGGTGCAGCCCAAAGCTGGCAGCTCGACAACCGCGGCAAGACC ATGGCGGCCGATCAGTTCGATTTCGGCTTCGCGGTTGACTGGATGCGCAAGGATCTGGGTCTGGTGCTGGATGAAGCCAG GCGCAATGGCGCGCGCCTGCCCGTGACAGCCCTGGTGGACCAGTTCTACGCCGATGTGCAGGCCATGGGTGGGCGACGCT GGGATACGTCCAGCCTGATCAGGCGCCTGAAATAG
Upstream 100 bases:
>100_bases TCGCCATCGTATAACCGTCCGGGCTGAGCCTGTCGAGGGCCCCAACCTCCCAACGCCTGTCGACAAGCTCAGGGCAAAAG GACAGCAGAGTCAACACGCC
Downstream 100 bases:
>100_bases GGCGAGCTGTGAGCGATCGCTGCCGCATCAAACGGCAGCTTGCGGCAAGCGCCGGCACCCGGCCAGGTGCCGGCCTGGAT CGGGCCCTCAATTGCTGGAC
Product: 2-hydroxy-3-oxopropionate reductase
Products: 2-methyl-3-oxopropanoate; NADH; H+
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MSSINTKTYEPSSPRKVAFLGLGVMGYPMAGHLALAGHQVTVYNRSPARSTAWCAEFAATARPSSATVPRLAAAGADVVF SCVGNDDDLRSVTLGPDGAFAGMKPGAVMVDHTTASADVARELHAAAQQLGLHFIDAPVSGGQAGAQNGILTVMCGGDAA AFESIKPAGMAFSRAFTLMGDSGAGQLTKMVNQVCIAGLVQGLSEAIAFGQKAGLDMNQVLDVIGKGAAQSWQLDNRGKT MAADQFDFGFAVDWMRKDLGLVLDEARRNGARLPVTALVDQFYADVQAMGGRRWDTSSLIRRLK
Sequences:
>Translated_304_residues MSSINTKTYEPSSPRKVAFLGLGVMGYPMAGHLALAGHQVTVYNRSPARSTAWCAEFAATARPSSATVPRLAAAGADVVF SCVGNDDDLRSVTLGPDGAFAGMKPGAVMVDHTTASADVARELHAAAQQLGLHFIDAPVSGGQAGAQNGILTVMCGGDAA AFESIKPAGMAFSRAFTLMGDSGAGQLTKMVNQVCIAGLVQGLSEAIAFGQKAGLDMNQVLDVIGKGAAQSWQLDNRGKT MAADQFDFGFAVDWMRKDLGLVLDEARRNGARLPVTALVDQFYADVQAMGGRRWDTSSLIRRLK >Mature_303_residues SSINTKTYEPSSPRKVAFLGLGVMGYPMAGHLALAGHQVTVYNRSPARSTAWCAEFAATARPSSATVPRLAAAGADVVFS CVGNDDDLRSVTLGPDGAFAGMKPGAVMVDHTTASADVARELHAAAQQLGLHFIDAPVSGGQAGAQNGILTVMCGGDAAA FESIKPAGMAFSRAFTLMGDSGAGQLTKMVNQVCIAGLVQGLSEAIAFGQKAGLDMNQVLDVIGKGAAQSWQLDNRGKTM AADQFDFGFAVDWMRKDLGLVLDEARRNGARLPVTALVDQFYADVQAMGGRRWDTSSLIRRLK
Specific function: Glyoxylate catabolism. [C]
COG id: COG2084
COG function: function code I; 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyisobutyrate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI40556376, Length=288, Percent_Identity=27.7777777777778, Blast_Score=129, Evalue=4e-30, Organism=Homo sapiens, GI23308751, Length=300, Percent_Identity=28.3333333333333, Blast_Score=115, Evalue=4e-26, Organism=Escherichia coli, GI1786719, Length=289, Percent_Identity=33.9100346020761, Blast_Score=162, Evalue=3e-41, Organism=Escherichia coli, GI145693186, Length=287, Percent_Identity=35.8885017421603, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1790315, Length=294, Percent_Identity=28.9115646258503, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1789092, Length=227, Percent_Identity=32.5991189427313, Blast_Score=99, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17557316, Length=273, Percent_Identity=27.1062271062271, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI28574115, Length=292, Percent_Identity=25.3424657534247, Blast_Score=114, Evalue=1e-25, Organism=Drosophila melanogaster, GI24655230, Length=300, Percent_Identity=29, Blast_Score=105, Evalue=5e-23, Organism=Drosophila melanogaster, GI19922568, Length=300, Percent_Identity=29, Blast_Score=105, Evalue=5e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002204 - InterPro: IPR015815 - InterPro: IPR008927 - InterPro: IPR006115 - InterPro: IPR013328 - InterPro: IPR016040 - InterPro: IPR006183 [H]
Pfam domain/function: PF03446 NAD_binding_2 [H]
EC number: 1.1.1.31
Molecular weight: Translated: 31801; Mature: 31669
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS00895 3_HYDROXYISOBUT_DH
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSINTKTYEPSSPRKVAFLGLGVMGYPMAGHLALAGHQVTVYNRSPARSTAWCAEFAAT CCCCCCCCCCCCCCCEEEEEECCHHCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHH ARPSSATVPRLAAAGADVVFSCVGNDDDLRSVTLGPDGAFAGMKPGAVMVDHTTASADVA CCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHH RELHAAAQQLGLHFIDAPVSGGQAGAQNGILTVMCGGDAAAFESIKPAGMAFSRAFTLMG HHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCHHHHHHEEEEC DSGAGQLTKMVNQVCIAGLVQGLSEAIAFGQKAGLDMNQVLDVIGKGAAQSWQLDNRGKT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEECCCCCE MAADQFDFGFAVDWMRKDLGLVLDEARRNGARLPVTALVDQFYADVQAMGGRRWDTSSLI EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH RRLK HHCC >Mature Secondary Structure SSINTKTYEPSSPRKVAFLGLGVMGYPMAGHLALAGHQVTVYNRSPARSTAWCAEFAAT CCCCCCCCCCCCCCEEEEEECCHHCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHH ARPSSATVPRLAAAGADVVFSCVGNDDDLRSVTLGPDGAFAGMKPGAVMVDHTTASADVA CCCCCCCCCHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCHHHHH RELHAAAQQLGLHFIDAPVSGGQAGAQNGILTVMCGGDAAAFESIKPAGMAFSRAFTLMG HHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCCHHHHHHEEEEC DSGAGQLTKMVNQVCIAGLVQGLSEAIAFGQKAGLDMNQVLDVIGKGAAQSWQLDNRGKT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEECCCCCE MAADQFDFGFAVDWMRKDLGLVLDEARRNGARLPVTALVDQFYADVQAMGGRRWDTSSLI EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHH RRLK HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 3-hydroxy-2-methylpropanoate; NAD+
Specific reaction: 3-hydroxy-2-methylpropanoate + NAD+ = 2-methyl-3-oxopropanoate + NADH + H+
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA