| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is lemA [H]
Identifier: 91786242
GI number: 91786242
Start: 353005
End: 353610
Strand: Reverse
Name: lemA [H]
Synonym: Bpro_0331
Alternate gene names: 91786242
Gene position: 353610-353005 (Counterclockwise)
Preceding gene: 91786247
Following gene: 91786241
Centisome position: 6.8
GC content: 60.23
Gene sequence:
>606_bases ATGAAATCCCGTAGTTTTAGTTTTGCCGGCTGGATGATGGCGGCCGCGCTGAGCGCGCTGCTCACCGGTTGCGGCTACAA CGACTTTCAGCGCCTGGACGAGCAGACCAAATCCGCCTGGTCCGAGGTGCTGAACCAGTACCAGCGCCGCGCTGACCTGG TCCCCAACATTGTCGCCACTGTCAAGGGCGAGGCCGCTTTCGAGCAGGACACGTTGACCAAGGTCATAGAGGCGCGCGCC AAGGCCACATCCATCCAGGTCACGCCCGAAACCCTGAACGACCCGGCCGCCTTCAACAAATTCCAGCAGGCCCAGGGCGA ACTCGGCAGCGCGCTCAGCCGGCTGATGGTGGTCAGCGAGCGCTATCCCGAACTCAAGGCCAACCAGGGTTTTCGTGACT TGCGGGTACAGCTGGAAGGCACCGAAAACCGCATCACGGTGGCGCGCAATCGCTACATCCAGGCGGTGCAGGAGTACAAC GTGCTGACACGCAGCTTCCCCAGCAACCTGACGGCCATGGTGTTCAGCTACAGCGTCAAACCCAACTTCAATGTGCAGAA CGAGGCACAGATCTCCACACCGCCTGTCGTTGACTTCAAGAAATAA
Upstream 100 bases:
>100_bases CTGCAGCGGATTGCCCACCGGCAAGGTGCTGCGAGGTGCGGAAGGAGTGGACGACATTCGACTATGTTAGTGTTGCGGCT TGTATTTTGGAGGCCCTTCC
Downstream 100 bases:
>100_bases GCGTTACCCTGGGATTGACCGTGCGTCGTTTTGCGGGTTTTCCAATTCGGGGCGGCGTCCTCCTGATGCTGGCCATGCTG CTGGCCGGCTGGCTGTCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 201
Protein sequence:
>201_residues MKSRSFSFAGWMMAAALSALLTGCGYNDFQRLDEQTKSAWSEVLNQYQRRADLVPNIVATVKGEAAFEQDTLTKVIEARA KATSIQVTPETLNDPAAFNKFQQAQGELGSALSRLMVVSERYPELKANQGFRDLRVQLEGTENRITVARNRYIQAVQEYN VLTRSFPSNLTAMVFSYSVKPNFNVQNEAQISTPPVVDFKK
Sequences:
>Translated_201_residues MKSRSFSFAGWMMAAALSALLTGCGYNDFQRLDEQTKSAWSEVLNQYQRRADLVPNIVATVKGEAAFEQDTLTKVIEARA KATSIQVTPETLNDPAAFNKFQQAQGELGSALSRLMVVSERYPELKANQGFRDLRVQLEGTENRITVARNRYIQAVQEYN VLTRSFPSNLTAMVFSYSVKPNFNVQNEAQISTPPVVDFKK >Mature_201_residues MKSRSFSFAGWMMAAALSALLTGCGYNDFQRLDEQTKSAWSEVLNQYQRRADLVPNIVATVKGEAAFEQDTLTKVIEARA KATSIQVTPETLNDPAAFNKFQQAQGELGSALSRLMVVSERYPELKANQGFRDLRVQLEGTENRITVARNRYIQAVQEYN VLTRSFPSNLTAMVFSYSVKPNFNVQNEAQISTPPVVDFKK
Specific function: Unknown
COG id: COG1704
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LemA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007156 [H]
Pfam domain/function: PF04011 LemA [H]
EC number: NA
Molecular weight: Translated: 22542; Mature: 22542
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSRSFSFAGWMMAAALSALLTGCGYNDFQRLDEQTKSAWSEVLNQYQRRADLVPNIVAT CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH VKGEAAFEQDTLTKVIEARAKATSIQVTPETLNDPAAFNKFQQAQGELGSALSRLMVVSE HCCCHHHHHHHHHHHHHHHHHHCEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RYPELKANQGFRDLRVQLEGTENRITVARNRYIQAVQEYNVLTRSFPSNLTAMVFSYSVK HCCCCCCCCCHHHEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEHHEEEECC PNFNVQNEAQISTPPVVDFKK CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKSRSFSFAGWMMAAALSALLTGCGYNDFQRLDEQTKSAWSEVLNQYQRRADLVPNIVAT CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH VKGEAAFEQDTLTKVIEARAKATSIQVTPETLNDPAAFNKFQQAQGELGSALSRLMVVSE HCCCHHHHHHHHHHHHHHHHHHCEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RYPELKANQGFRDLRVQLEGTENRITVARNRYIQAVQEYNVLTRSFPSNLTAMVFSYSVK HCCCCCCCCCHHHEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCEEHHEEEECC PNFNVQNEAQISTPPVVDFKK CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11860552 [H]