| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91786187
Identifier: 91786187
GI number: 91786187
Start: 292872
End: 293495
Strand: Reverse
Name: 91786187
Synonym: Bpro_0276
Alternate gene names: NA
Gene position: 293495-292872 (Counterclockwise)
Preceding gene: 91786188
Following gene: 91786183
Centisome position: 5.64
GC content: 59.78
Gene sequence:
>624_bases ATGGCGGACGATCCAATGTCGATGTATCACGAGGGAATGCGGCGCCTTCAGGACGTGCGCGAAACACGTCCTCTGGCGGA CCGCCTGGAGCAGGTGACTGTTCGCGCGGCGTTTACCGGAGAAGACCGGGCATTTATAGAGCGCTGCCCCATGTTCTTCA TCGCCACAGCTGACGCCAGCGGCCATCCCGACTGTTCCTATAAAGGCGGCTTGCCCGGATTCGTGCACGTGCTGGACGAT CACACCCTTGCCATTCCTGATTACGATGGCAACGGAATGTACAGATCCTGGGGGAATGCTCTGCTCAACCCCCATGTCGG GCTTTTGTTCCTGGACTTCGAAAACCCGAAGCGACTTCGGGTGAATGGTACAGCGCAGGTCAGCGAAAATGACCCCTTGC GCGCCGAGTACCCGGGTTCGGTGTTCATCGTTCGCGTCACGGCAACGCGCATCTTTCCAAACTGCCCTCGCTACATCCAC AAGATGCAACTGGTCGACTACTCGGCCTACGCACCCAAGTCGGGGTACACGCCGCCAGTCCCTGCGTGGAAAACGTTTGA TGCCTTTCGCGATGCCCTGCCGGCTCGCGACCGTCCGGACGGCAAGAAAGAGGGAGGCCCCTGA
Upstream 100 bases:
>100_bases GACGGCTTGTGCAATGAGCGCTGACTACACGCAGTAGTCTTCCCCCTGGCGCCATCACAAAACGTCAGGGTTCGGTCCCA CTGACCTGCCGGGAGGAACC
Downstream 100 bases:
>100_bases AGGCCGACTTCATCAGTCCCCGACTGCAAACCGTCCCATGACAGCGCCCCAGCACCTTCTGCCGCGCGGCGCCGCCGGTG TCCGCCGGGTGCTGGCGGAC
Product: pyridoxamine 5'-phosphate oxidase-like protein
Products: NA
Alternate protein names: Pyridoxamine 5-Phosphate Oxidase; Pyridoxamine 5-Phosphate Oxidase-Like Protein; Phosphohydrolase; Hydrolase; Pyridoxamine 5-Phosphate Oxidase Family; Pyridoxamine 5-Phosphate Oxidase-Related Protein; Pyridoxine 5`-Phosphate Oxidase Protein; Pyridoxamine 5-Phosphate Oxidase-Related; Flavodoxin Reductase; Pyridoxine 5-Phosphate Oxidase; Oxidoreductase; Flavohemoprotein; NTP Pyrophosphohydrolase; Pyridoxine 5-Phosphate Oxidase Protein; Pyridoxamine 5\-Phosphate Oxidase Family Protein
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MADDPMSMYHEGMRRLQDVRETRPLADRLEQVTVRAAFTGEDRAFIERCPMFFIATADASGHPDCSYKGGLPGFVHVLDD HTLAIPDYDGNGMYRSWGNALLNPHVGLLFLDFENPKRLRVNGTAQVSENDPLRAEYPGSVFIVRVTATRIFPNCPRYIH KMQLVDYSAYAPKSGYTPPVPAWKTFDAFRDALPARDRPDGKKEGGP
Sequences:
>Translated_207_residues MADDPMSMYHEGMRRLQDVRETRPLADRLEQVTVRAAFTGEDRAFIERCPMFFIATADASGHPDCSYKGGLPGFVHVLDD HTLAIPDYDGNGMYRSWGNALLNPHVGLLFLDFENPKRLRVNGTAQVSENDPLRAEYPGSVFIVRVTATRIFPNCPRYIH KMQLVDYSAYAPKSGYTPPVPAWKTFDAFRDALPARDRPDGKKEGGP >Mature_206_residues ADDPMSMYHEGMRRLQDVRETRPLADRLEQVTVRAAFTGEDRAFIERCPMFFIATADASGHPDCSYKGGLPGFVHVLDDH TLAIPDYDGNGMYRSWGNALLNPHVGLLFLDFENPKRLRVNGTAQVSENDPLRAEYPGSVFIVRVTATRIFPNCPRYIHK MQLVDYSAYAPKSGYTPPVPAWKTFDAFRDALPARDRPDGKKEGGP
Specific function: Unknown
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23264; Mature: 23132
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADDPMSMYHEGMRRLQDVRETRPLADRLEQVTVRAAFTGEDRAFIERCPMFFIATADAS CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCHHHHHHCCEEEEEECCCC GHPDCSYKGGLPGFVHVLDDHTLAIPDYDGNGMYRSWGNALLNPHVGLLFLDFENPKRLR CCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHCCHHCCCCCEEEEEECCCCCEEE VNGTAQVSENDPLRAEYPGSVFIVRVTATRIFPNCPRYIHKMQLVDYSAYAPKSGYTPPV ECCEEEECCCCCCEEECCCCEEEEEEEEEHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCC PAWKTFDAFRDALPARDRPDGKKEGGP CCCHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure ADDPMSMYHEGMRRLQDVRETRPLADRLEQVTVRAAFTGEDRAFIERCPMFFIATADAS CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEEECCCCHHHHHHCCEEEEEECCCC GHPDCSYKGGLPGFVHVLDDHTLAIPDYDGNGMYRSWGNALLNPHVGLLFLDFENPKRLR CCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCHHHHCCHHCCCCCEEEEEECCCCCEEE VNGTAQVSENDPLRAEYPGSVFIVRVTATRIFPNCPRYIHKMQLVDYSAYAPKSGYTPPV ECCEEEECCCCCCEEECCCCEEEEEEEEEHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCC PAWKTFDAFRDALPARDRPDGKKEGGP CCCHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA