| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yrbE [C]
Identifier: 91786141
GI number: 91786141
Start: 252876
End: 254027
Strand: Direct
Name: yrbE [C]
Synonym: Bpro_0230
Alternate gene names: 91786141
Gene position: 252876-254027 (Clockwise)
Preceding gene: 91786136
Following gene: 91786142
Centisome position: 4.86
GC content: 65.19
Gene sequence:
>1152_bases ATGCTTATGGAAGAATCCACGCCCCGCATTGAACAGCAGGACACAGCCGAAGGCCGGCGGTTTGTCGTGCGGGGGGCATG GACGGCCTCGGACCTCACGGGCCGGCTGGTATGGGACACCCTGACGGCACAGCTTGAGATCCTGCGCCGCCATGCCGCGC CCGCTGGCGAGGCGTCGACCGTCCGGTGGGATTTGAGCGGGCTCGAGAAGCTCGACCACCTCGGTGCCCAGGTGCTGTGG AATCACTGGGGCCGCGACTGGCCGGCACAGCTGCAGGTCGAACCCAGCCAGCGTGCGGTGCTGGAGACCGTGGCCAAATT CGCGGTCGTCCCGCCAAAACCGCGCGGGTCCGACTGGAAGGACCTCCTGGTGCTACTTGGCAACCGGGCGCTGGACCTGG TCGATCACAGCAAGGGCCTGGTGCGCCTGGTGGGCCAGTTGCTGCTCGACATCATCCGGCTTGTCCGGCACCCGAAGGAG GGCCCCTGGCGTGATCTCTCGGGTCACCTGTACCACATTGGCGCCACGGCGCTGCCCATTACCGCGCTGGTGGGATTTCT GATCGGCGTCGTGCTGGCCTACCTGATTTCGCAGCAGCTGCGCCAGTTCGGGGCAGATGCCTACATCGTGAATATTCTTG GCATCTCGCTGATCCGGGAACTCGGGCCGGTATTGGCGGCCATTCTTATCGCGGGGCGCTCCGGCTCCGCCATCACCGCC CAGATTGGCGTGATGCGCGTGACCGAAGAACTCGACGCCATGCGGGTGATGGGCATCGCCCGGGGCTTCCGGCTGGTGAT GCCGCGGGCGCTGGCATTGGCGGTGGTGATGCCGCTGATCAGCGTCTGGACCACGATTGCCGCCCTGCTCGGCGGCATGC TGGCCGCCGATATCTCCATGGGTGTGACGCCCTCGTACTTCATCAACTCGCTGCCGCGTGCGGTGGATGCCGCCAACCTG ACGCTGGCCACCGGCAAGTCGGTCGTGTTTGGCGTGCTGATCGCCATGGTGGGATGCCATTACGGCCTGCGTGTCAAACC CAATACCGAGAGCCTGGGGCAGGGCACCACCGCCTCGGTGGTTACGTCGATCACCGTGGTGATTCTGGTGGACGCGTTGT TTGCGGTCGTGTTTAAAAGCGTGGGCATATGA
Upstream 100 bases:
>100_bases AACCGTGCACATCTGCCCGAATGGGTATTGCCAACAGTTACCATGACAATTTTGCGCGGCCGCGCATGCAAAGGTCACCG GCCTGCGCCCCGCCTCAGTC
Downstream 100 bases:
>100_bases ATGTCGCCCCCACGCTTGTCACTGCGTGTACTGCGCTGCCCCCCGAGGGGGCCGCTGCGCCTGCGGTCTGGCAAAGCCAG TCCCGCGGCCCCTGCTGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 383; Mature: 383
Protein sequence:
>383_residues MLMEESTPRIEQQDTAEGRRFVVRGAWTASDLTGRLVWDTLTAQLEILRRHAAPAGEASTVRWDLSGLEKLDHLGAQVLW NHWGRDWPAQLQVEPSQRAVLETVAKFAVVPPKPRGSDWKDLLVLLGNRALDLVDHSKGLVRLVGQLLLDIIRLVRHPKE GPWRDLSGHLYHIGATALPITALVGFLIGVVLAYLISQQLRQFGADAYIVNILGISLIRELGPVLAAILIAGRSGSAITA QIGVMRVTEELDAMRVMGIARGFRLVMPRALALAVVMPLISVWTTIAALLGGMLAADISMGVTPSYFINSLPRAVDAANL TLATGKSVVFGVLIAMVGCHYGLRVKPNTESLGQGTTASVVTSITVVILVDALFAVVFKSVGI
Sequences:
>Translated_383_residues MLMEESTPRIEQQDTAEGRRFVVRGAWTASDLTGRLVWDTLTAQLEILRRHAAPAGEASTVRWDLSGLEKLDHLGAQVLW NHWGRDWPAQLQVEPSQRAVLETVAKFAVVPPKPRGSDWKDLLVLLGNRALDLVDHSKGLVRLVGQLLLDIIRLVRHPKE GPWRDLSGHLYHIGATALPITALVGFLIGVVLAYLISQQLRQFGADAYIVNILGISLIRELGPVLAAILIAGRSGSAITA QIGVMRVTEELDAMRVMGIARGFRLVMPRALALAVVMPLISVWTTIAALLGGMLAADISMGVTPSYFINSLPRAVDAANL TLATGKSVVFGVLIAMVGCHYGLRVKPNTESLGQGTTASVVTSITVVILVDALFAVVFKSVGI >Mature_383_residues MLMEESTPRIEQQDTAEGRRFVVRGAWTASDLTGRLVWDTLTAQLEILRRHAAPAGEASTVRWDLSGLEKLDHLGAQVLW NHWGRDWPAQLQVEPSQRAVLETVAKFAVVPPKPRGSDWKDLLVLLGNRALDLVDHSKGLVRLVGQLLLDIIRLVRHPKE GPWRDLSGHLYHIGATALPITALVGFLIGVVLAYLISQQLRQFGADAYIVNILGISLIRELGPVLAAILIAGRSGSAITA QIGVMRVTEELDAMRVMGIARGFRLVMPRALALAVVMPLISVWTTIAALLGGMLAADISMGVTPSYFINSLPRAVDAANL TLATGKSVVFGVLIAMVGCHYGLRVKPNTESLGQGTTASVVTSITVVILVDALFAVVFKSVGI
Specific function: Could be part of an ABC transporter complex [H]
COG id: COG0767
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mlaE permease family [H]
Homologues:
Organism=Escherichia coli, GI1789585, Length=204, Percent_Identity=33.8235294117647, Blast_Score=106, Evalue=3e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003453 [H]
Pfam domain/function: PF02405 DUF140 [H]
EC number: NA
Molecular weight: Translated: 41311; Mature: 41311
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLMEESTPRIEQQDTAEGRRFVVRGAWTASDLTGRLVWDTLTAQLEILRRHAAPAGEAST CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCE VRWDLSGLEKLDHLGAQVLWNHWGRDWPAQLQVEPSQRAVLETVAKFAVVPPKPRGSDWK EEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCHH DLLVLLGNRALDLVDHSKGLVRLVGQLLLDIIRLVRHPKEGPWRDLSGHLYHIGATALPI HHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHH TALVGFLIGVVLAYLISQQLRQFGADAYIVNILGISLIRELGPVLAAILIAGRSGSAITA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH QIGVMRVTEELDAMRVMGIARGFRLVMPRALALAVVMPLISVWTTIAALLGGMLAADISM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVTPSYFINSLPRAVDAANLTLATGKSVVFGVLIAMVGCHYGLRVKPNTESLGQGTTASV CCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCEECCCCHHHCCCCHHHH VTSITVVILVDALFAVVFKSVGI HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLMEESTPRIEQQDTAEGRRFVVRGAWTASDLTGRLVWDTLTAQLEILRRHAAPAGEAST CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCE VRWDLSGLEKLDHLGAQVLWNHWGRDWPAQLQVEPSQRAVLETVAKFAVVPPKPRGSDWK EEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCHH DLLVLLGNRALDLVDHSKGLVRLVGQLLLDIIRLVRHPKEGPWRDLSGHLYHIGATALPI HHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHH TALVGFLIGVVLAYLISQQLRQFGADAYIVNILGISLIRELGPVLAAILIAGRSGSAITA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEH QIGVMRVTEELDAMRVMGIARGFRLVMPRALALAVVMPLISVWTTIAALLGGMLAADISM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVTPSYFINSLPRAVDAANLTLATGKSVVFGVLIAMVGCHYGLRVKPNTESLGQGTTASV CCCHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCEECCCCHHHCCCCHHHH VTSITVVILVDALFAVVFKSVGI HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]