| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is gatC [H]
Identifier: 91786132
GI number: 91786132
Start: 241816
End: 242115
Strand: Reverse
Name: gatC [H]
Synonym: Bpro_0221
Alternate gene names: 91786132
Gene position: 242115-241816 (Counterclockwise)
Preceding gene: 91786137
Following gene: 91786131
Centisome position: 4.66
GC content: 65.67
Gene sequence:
>300_bases ATGGCACTGACATCCCAAGACATCGCACGCGTCGCCAACCTGGCGCGCCTGGAATTGCGACCTGAAGAGACCGAACACAC CCTGAGCCAGCTCAACGGCTTTTTCGCCCTGGTGGAGCAAATGGCCGCCGTCAATACCGACGGCGTGGAACCGCTGGCCC ACCCGGCAGCCGTGATTGGCGAGGTGGCGCTGCGCCTGCGCGATGACATCGCCAGCGAGCCCAACCAGCGCGAGGCCAGC CAGGTCAGCGCCCCCGCCGTGGAACGCGGCCTGTTTCTCGTGCCCAAGGTGATCGAATGA
Upstream 100 bases:
>100_bases AATGGCTGCGGCGCGGCGTTTTTTCGGCCTTACACCTTGTTTCTGCTTGAGTTTTTGTCCTTTTCCCTGCACCTATTTCC CTGCATCTAACTACCACCCC
Downstream 100 bases:
>100_bases GCGCCCCCGACCGCAGCACCGATTTGCACGACCTCGGCGTCGCAGAACTCGCCGCCAGGCTGGCCGCCCGCGAGGTCTCC AGCGTCGAGGTGACCCGGCA
Product: aspartyl/glutamyl-tRNA amidotransferase subunit C
Products: NA
Alternate protein names: Asp/Glu-ADT subunit C [H]
Number of amino acids: Translated: 99; Mature: 98
Protein sequence:
>99_residues MALTSQDIARVANLARLELRPEETEHTLSQLNGFFALVEQMAAVNTDGVEPLAHPAAVIGEVALRLRDDIASEPNQREAS QVSAPAVERGLFLVPKVIE
Sequences:
>Translated_99_residues MALTSQDIARVANLARLELRPEETEHTLSQLNGFFALVEQMAAVNTDGVEPLAHPAAVIGEVALRLRDDIASEPNQREAS QVSAPAVERGLFLVPKVIE >Mature_98_residues ALTSQDIARVANLARLELRPEETEHTLSQLNGFFALVEQMAAVNTDGVEPLAHPAAVIGEVALRLRDDIASEPNQREASQ VSAPAVERGLFLVPKVIE
Specific function: Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction take
COG id: COG0721
COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gatC family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003837 [H]
Pfam domain/function: PF02686 Glu-tRNAGln [H]
EC number: 6.3.5.-
Molecular weight: Translated: 10714; Mature: 10583
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTSQDIARVANLARLELRPEETEHTLSQLNGFFALVEQMAAVNTDGVEPLAHPAAVIG CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH EVALRLRDDIASEPNQREASQVSAPAVERGLFLVPKVIE HHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCCCCCHHCC >Mature Secondary Structure ALTSQDIARVANLARLELRPEETEHTLSQLNGFFALVEQMAAVNTDGVEPLAHPAAVIG CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH EVALRLRDDIASEPNQREASQVSAPAVERGLFLVPKVIE HHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCCCCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA