| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yvrH [H]
Identifier: 91786124
GI number: 91786124
Start: 233589
End: 233975
Strand: Direct
Name: yvrH [H]
Synonym: Bpro_0213
Alternate gene names: 91786124
Gene position: 233589-233975 (Clockwise)
Preceding gene: 91786123
Following gene: 91786128
Centisome position: 4.49
GC content: 66.41
Gene sequence:
>387_bases ATGCCCGCACCACTCCAACGCATTTTGTATGTTGAAGACGAGCCCGACATCCGCGTCGTGGCGAAAATGGCCCTGGAGGC CGTCGGCAAGTTCACGGTGATCCCCTGCGCCTCCGGGCAGGAGGCGCTGAGCGTGGCCCCCGGCGCCGCAGCCGACCTGC TGCTGCTCGACGTCATGATGCCGGGCATGGACGGGCCCAGCACGCTCAAGGCCTTGCGCGCAATGCCTGCCACGGCCGGC ACGCCGGTGATCTTCATGACCGCCAAGGTGCAGGCCTCGGAGATTGCGGCGTACAAGGCGCTGGGCGCGCTGGATGTGAT TCCCAAGCCCTTTGACCCAATGGAGCTTTCCGCGCAGATCCAGCAGATCTGGGCCGCGCGGGGTTGA
Upstream 100 bases:
>100_bases AGGCCCACACCTCCAATACCGAGCTGTTAAATACAATTCAGCGTATCCTCCAGATTCCCGGAGACCCCGGCCCCACCCGT CCCCAACCTCTGATCTGACC
Downstream 100 bases:
>100_bases GTCCAGAGCCCGCTCTCGGGGTTGAAGGTGCTGTCAGCCCCTGACCCACATCCATCGCTTGAGTTGTCCCATCAAGCAGG CAACACTGCACTGGGGGTCT
Product: response regulator receiver domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MPAPLQRILYVEDEPDIRVVAKMALEAVGKFTVIPCASGQEALSVAPGAAADLLLLDVMMPGMDGPSTLKALRAMPATAG TPVIFMTAKVQASEIAAYKALGALDVIPKPFDPMELSAQIQQIWAARG
Sequences:
>Translated_128_residues MPAPLQRILYVEDEPDIRVVAKMALEAVGKFTVIPCASGQEALSVAPGAAADLLLLDVMMPGMDGPSTLKALRAMPATAG TPVIFMTAKVQASEIAAYKALGALDVIPKPFDPMELSAQIQQIWAARG >Mature_127_residues PAPLQRILYVEDEPDIRVVAKMALEAVGKFTVIPCASGQEALSVAPGAAADLLLLDVMMPGMDGPSTLKALRAMPATAGT PVIFMTAKVQASEIAAYKALGALDVIPKPFDPMELSAQIQQIWAARG
Specific function: Member of the two-component regulatory system YvrG/YvrH that positively regulates 7 transcriptional units (wprA, wapA- yxxG, dltABCDE, sunA, sunT-bdbA-yolJ-bdbB, sigO-rsoA, and sigX- rsiX), and negatively regulates the lytABC operon [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=118, Percent_Identity=35.5932203389831, Blast_Score=64, Evalue=4e-12, Organism=Escherichia coli, GI1788550, Length=118, Percent_Identity=34.7457627118644, Blast_Score=63, Evalue=7e-12, Organism=Escherichia coli, GI1789809, Length=117, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=1e-11, Organism=Escherichia coli, GI2367329, Length=119, Percent_Identity=40.3361344537815, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1790299, Length=116, Percent_Identity=36.2068965517241, Blast_Score=60, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 13433; Mature: 13302
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAPLQRILYVEDEPDIRVVAKMALEAVGKFTVIPCASGQEALSVAPGAAADLLLLDVMM CCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCCEEECCCCHHHHHHHHHHC PGMDGPSTLKALRAMPATAGTPVIFMTAKVQASEIAAYKALGALDVIPKPFDPMELSAQI CCCCCHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH QQIWAARG HHHHHCCC >Mature Secondary Structure PAPLQRILYVEDEPDIRVVAKMALEAVGKFTVIPCASGQEALSVAPGAAADLLLLDVMM CCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCCEEECCCCHHHHHHHHHHC PGMDGPSTLKALRAMPATAGTPVIFMTAKVQASEIAAYKALGALDVIPKPFDPMELSAQI CCCCCHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHH QQIWAARG HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]