| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is bphB [H]
Identifier: 91786065
GI number: 91786065
Start: 163950
End: 166487
Strand: Direct
Name: bphB [H]
Synonym: Bpro_0154
Alternate gene names: 91786065
Gene position: 163950-166487 (Clockwise)
Preceding gene: 91786064
Following gene: 91786067
Centisome position: 3.15
GC content: 65.92
Gene sequence:
>2538_bases ATGGCGGGGCTGGCACTGGCGGTGGGGCTGGTGTTCACCGGGCTGGGCGCGTTCTGGGTGCATGACAGCATCCAGGCCGA AGCCAGGGCGCGCTTTGGTCGCCAGGTGGACCGTCTCCAGTCCGATGTGGAAAATCGCCTGAACGCGCCCTTGGTGGGCC TGCGGGGCGCCGCCGGTGTCTATGCGGCCAGCCATTCGGTAGAGCGTGCTGAATTCCGTGCCTACGTGGAGTCCCTGCAG CTGCAGCGCGATTTCCCCGGTGTGCGCGGCTACGGCTTCCTGGCATGGATGCTGCGTGATGACCTGGGCCGCTTCGTCAG CGCGGAACGGGGCGATGGCGCACCCGCCTTTTCTGTCAATGCGGCCGGCAGTGCACCCGACCTTTACGTGGTGAAATACA TCGAGCCGGAGGCCGACAACCACCCCTTGCTCGGTGAGGACCTGGGCGCCGACGCTGTGCGTCGCGAAGCCATCGAAGGA GCCCTCGCCACCGGCATGCCGACACTGAGCAAAGCGGTCATGTTGTCGGGAGCGTCCCGGCAGGAGCGCGGGTTTGTCTA CCTGCTGCCGGTTTTCCGCACCGGCACCGACCCCTCCACGCCGGCGCAACGCCGCGCGGCCCTGGTGGGGTTGCTGTTTG CGCCTCTGGCGGTGGGCGAGGTCATGAGTGGTGCGGTTGCGGCTGTGCAGGGGCAGGCGGACTTCGAACTCTTTGACGGT GCCAGGGCCACGGCGGATCAGCTGATTTATGACTTTGACGGGCACCTGGCCGCCGTCAGGGGCGAGATTGGCCCGGCGCA CTATGCCGACCGCCTGCTTCACGCGTCACGTGCCATTTCAGCCGGTGGGCGCACCCTCACGCTGCATGTCAGCTCGACAG CCGCTTTCGAGGCGCAAGCCGCGAGCCCCTTGCCGGCCCTGCTGGGCCTGGGCGGCGCAGCGCTGAGCCTGTTGCTGGCG ATCTGCATCTGGCTGCTTGGCAGCAGCCGGGCGCGAGCCCTGGCTGCGGCCCAGCGCATGACCCTCAGCCTGGCCCATGA GCAGCAGCGTCTGCTCAGCATGGTGGAAGGTACCAATGTCGGAACCTGGGAGTGGAATGTGCAGACCGGCGAGATCCGCC TGGACGAGCGCTGGGCCGGAATCATCGGCTACACGCTGGGCGAGTTGCAACCGGTCAGCATCCAGACCTGGCGCGGCCAG TCGCACCCCGATGACCTGGCACGTTCCGATGCGTTGCTGGAGCAGCATTTTGCCGGGCAGACCTCCTACTATGACTTCGA GGCGCGCATGCGCCACAAGGATGGCCGCTGGGTCTGGGTGTTGGTGCGGGGCCGGGTCTCGGCGTGGACCGATCGCCGCA GGCCCGCCCTGATGGCGGGCACCCTGATGGACATCACCGAGCGCCAGATGGCCCAGCTGGCTCTGCGCAACAGCGAGGAA CATTTCCGTCAGCTCTATGAGACCAGCCTGGACGGCATTTTGCAGACCCGGCCCGATGGACAGGTGCTGCATGCCAACCC GGCCGCCTGCGAGCTGTTTGGCATGAGCCTGGACGAACTGCGGCAGCGTGGCCGGCACGGCCTGGTCGACCCCGGCGACG CGCGCCTGGAGCCGTTGCTGGAGGAGCGCCAGCGCGAAGGCAAAGCTTACGGCGAACTCCGGATGCTGCGCAGTGACGGT TCCTATTTCGAGTGCGAACTGTCATCATCGATGTACCTCGACCAGGGCAATCAGGCCTGCGCCAACATTGTTTTGCGCGA CATCACCGTGCGCAAGCGCTCGGAGGCGCGCATCACGGAACTCAATACCGAGCTGGAGCAGCGGGTCAAGCGGCGTACCG CGCAGCTGGAAGCGTCCAACCGGGATTTGCAGGAGTTTGCCCATTCGGTGGCGCATGACCTGCGCCAGCCCATCATTGCC ATTGGCGGCTTCAGCGGTTTGCTCGAACGCATGGTGACAGACCCGCATGGCAAACATTACCTCGCGCGCATCAAGGCTGG CGTCCAGCAGGCGGGTGAGTTGACCGAGGCCCTGCTCGCGCTGGCCAACCTGTCGCGCGTGCAGTTGCGTCCGCAGGCGG TGGACCTCAGCGCCATTGCGCGCAGCGTGATGGACAACCTGCAGCAGCAAGACAGCAGACGCGTGGCCAGCATCTGCATC GAGGGCAACCTGGTGGTGCAGGCCGATCCCATGCTGCTCCGGCTGGTCATGGAAGAGCTGTTGGGCAACGCCTGGAAATT CACCTCGCGGCAGAGCTGCACCGAAATCAGCTTTGGCGTGCGCGAGGTGGCGGTGGGTGAGGTCGCCCAGACCGTCTATG AGGTCAGGGACAACGGGGTCGGTTTCGAGATGGCACACGCCGGCAAGCTGTTTCGCAGCTTCCAGCGCCTGCACTCGCAG GTGGATTTTCCCGGTGTGGGGGTGGGCCTGGCCAACATCCGCAGAATCATCGTGCGCCATGGCGGGCAAATCTGGGCCCA GTCGGCCATTGGCCAGGGTGCCAGCTTCTGTTTCACGCTCGCATATCCCCGGCCTTGA
Upstream 100 bases:
>100_bases CCCATGTGCCTCTTTCGCGACCGGTTGTCGTCCTGCCATGAGCCGGCAGGTAGTGCCCGCTGAACCGCCCTCCATCAACC GCCAGCGCGCTGCCGCGGGC
Downstream 100 bases:
>100_bases GCGGGCTGGGGATGCCGGCTTGAAGTGCTATCAATTGTGTAGCTTTCAATCCTTGGAAAAAGAGGGCGGTCCAATTTCGA TCAGCAAATCGGGCTTGAAC
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 845; Mature: 844
Protein sequence:
>845_residues MAGLALAVGLVFTGLGAFWVHDSIQAEARARFGRQVDRLQSDVENRLNAPLVGLRGAAGVYAASHSVERAEFRAYVESLQ LQRDFPGVRGYGFLAWMLRDDLGRFVSAERGDGAPAFSVNAAGSAPDLYVVKYIEPEADNHPLLGEDLGADAVRREAIEG ALATGMPTLSKAVMLSGASRQERGFVYLLPVFRTGTDPSTPAQRRAALVGLLFAPLAVGEVMSGAVAAVQGQADFELFDG ARATADQLIYDFDGHLAAVRGEIGPAHYADRLLHASRAISAGGRTLTLHVSSTAAFEAQAASPLPALLGLGGAALSLLLA ICIWLLGSSRARALAAAQRMTLSLAHEQQRLLSMVEGTNVGTWEWNVQTGEIRLDERWAGIIGYTLGELQPVSIQTWRGQ SHPDDLARSDALLEQHFAGQTSYYDFEARMRHKDGRWVWVLVRGRVSAWTDRRRPALMAGTLMDITERQMAQLALRNSEE HFRQLYETSLDGILQTRPDGQVLHANPAACELFGMSLDELRQRGRHGLVDPGDARLEPLLEERQREGKAYGELRMLRSDG SYFECELSSSMYLDQGNQACANIVLRDITVRKRSEARITELNTELEQRVKRRTAQLEASNRDLQEFAHSVAHDLRQPIIA IGGFSGLLERMVTDPHGKHYLARIKAGVQQAGELTEALLALANLSRVQLRPQAVDLSAIARSVMDNLQQQDSRRVASICI EGNLVVQADPMLLRLVMEELLGNAWKFTSRQSCTEISFGVREVAVGEVAQTVYEVRDNGVGFEMAHAGKLFRSFQRLHSQ VDFPGVGVGLANIRRIIVRHGGQIWAQSAIGQGASFCFTLAYPRP
Sequences:
>Translated_845_residues MAGLALAVGLVFTGLGAFWVHDSIQAEARARFGRQVDRLQSDVENRLNAPLVGLRGAAGVYAASHSVERAEFRAYVESLQ LQRDFPGVRGYGFLAWMLRDDLGRFVSAERGDGAPAFSVNAAGSAPDLYVVKYIEPEADNHPLLGEDLGADAVRREAIEG ALATGMPTLSKAVMLSGASRQERGFVYLLPVFRTGTDPSTPAQRRAALVGLLFAPLAVGEVMSGAVAAVQGQADFELFDG ARATADQLIYDFDGHLAAVRGEIGPAHYADRLLHASRAISAGGRTLTLHVSSTAAFEAQAASPLPALLGLGGAALSLLLA ICIWLLGSSRARALAAAQRMTLSLAHEQQRLLSMVEGTNVGTWEWNVQTGEIRLDERWAGIIGYTLGELQPVSIQTWRGQ SHPDDLARSDALLEQHFAGQTSYYDFEARMRHKDGRWVWVLVRGRVSAWTDRRRPALMAGTLMDITERQMAQLALRNSEE HFRQLYETSLDGILQTRPDGQVLHANPAACELFGMSLDELRQRGRHGLVDPGDARLEPLLEERQREGKAYGELRMLRSDG SYFECELSSSMYLDQGNQACANIVLRDITVRKRSEARITELNTELEQRVKRRTAQLEASNRDLQEFAHSVAHDLRQPIIA IGGFSGLLERMVTDPHGKHYLARIKAGVQQAGELTEALLALANLSRVQLRPQAVDLSAIARSVMDNLQQQDSRRVASICI EGNLVVQADPMLLRLVMEELLGNAWKFTSRQSCTEISFGVREVAVGEVAQTVYEVRDNGVGFEMAHAGKLFRSFQRLHSQ VDFPGVGVGLANIRRIIVRHGGQIWAQSAIGQGASFCFTLAYPRP >Mature_844_residues AGLALAVGLVFTGLGAFWVHDSIQAEARARFGRQVDRLQSDVENRLNAPLVGLRGAAGVYAASHSVERAEFRAYVESLQL QRDFPGVRGYGFLAWMLRDDLGRFVSAERGDGAPAFSVNAAGSAPDLYVVKYIEPEADNHPLLGEDLGADAVRREAIEGA LATGMPTLSKAVMLSGASRQERGFVYLLPVFRTGTDPSTPAQRRAALVGLLFAPLAVGEVMSGAVAAVQGQADFELFDGA RATADQLIYDFDGHLAAVRGEIGPAHYADRLLHASRAISAGGRTLTLHVSSTAAFEAQAASPLPALLGLGGAALSLLLAI CIWLLGSSRARALAAAQRMTLSLAHEQQRLLSMVEGTNVGTWEWNVQTGEIRLDERWAGIIGYTLGELQPVSIQTWRGQS HPDDLARSDALLEQHFAGQTSYYDFEARMRHKDGRWVWVLVRGRVSAWTDRRRPALMAGTLMDITERQMAQLALRNSEEH FRQLYETSLDGILQTRPDGQVLHANPAACELFGMSLDELRQRGRHGLVDPGDARLEPLLEERQREGKAYGELRMLRSDGS YFECELSSSMYLDQGNQACANIVLRDITVRKRSEARITELNTELEQRVKRRTAQLEASNRDLQEFAHSVAHDLRQPIIAI GGFSGLLERMVTDPHGKHYLARIKAGVQQAGELTEALLALANLSRVQLRPQAVDLSAIARSVMDNLQQQDSRRVASICIE GNLVVQADPMLLRLVMEELLGNAWKFTSRQSCTEISFGVREVAVGEVAQTVYEVRDNGVGFEMAHAGKLFRSFQRLHSQV DFPGVGVGLANIRRIIVRHGGQIWAQSAIGQGASFCFTLAYPRP
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI48994928, Length=396, Percent_Identity=24.7474747474747, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI1788549, Length=371, Percent_Identity=25.6064690026954, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1789149, Length=304, Percent_Identity=22.6973684210526, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1786912, Length=217, Percent_Identity=28.110599078341, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003018 - InterPro: IPR013654 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 92600; Mature: 92469
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS50839 CHASE ; PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGLALAVGLVFTGLGAFWVHDSIQAEARARFGRQVDRLQSDVENRLNAPLVGLRGAAGV CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCH YAASHSVERAEFRAYVESLQLQRDFPGVRGYGFLAWMLRDDLGRFVSAERGDGAPAFSVN HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC AAGSAPDLYVVKYIEPEADNHPLLGEDLGADAVRREAIEGALATGMPTLSKAVMLSGASR CCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC QERGFVYLLPVFRTGTDPSTPAQRRAALVGLLFAPLAVGEVMSGAVAAVQGQADFELFDG CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCCCHHHHCC ARATADQLIYDFDGHLAAVRGEIGPAHYADRLLHASRAISAGGRTLTLHVSSTAAFEAQA CHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCC ASPLPALLGLGGAALSLLLAICIWLLGSSRARALAAAQRMTLSLAHEQQRLLSMVEGTNV CCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GTWEWNVQTGEIRLDERWAGIIGYTLGELQPVSIQTWRGQSHPDDLARSDALLEQHFAGQ CEEEEEEEECCEEECCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC TSYYDFEARMRHKDGRWVWVLVRGRVSAWTDRRRPALMAGTLMDITERQMAQLALRNSEE CCEEEHHHHHHCCCCCEEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH HFRQLYETSLDGILQTRPDGQVLHANPAACELFGMSLDELRQRGRHGLVDPGDARLEPLL HHHHHHHHHHHHHEECCCCCCEEECCCCHHHEECCCHHHHHHCCCCCCCCCCHHHHHHHH EERQREGKAYGELRMLRSDGSYFECELSSSMYLDQGNQACANIVLRDITVRKRSEARITE HHHHHCCCHHHHHEEEECCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHH LNTELEQRVKRRTAQLEASNRDLQEFAHSVAHDLRQPIIAIGGFSGLLERMVTDPHGKHY HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCHHH LARIKAGVQQAGELTEALLALANLSRVQLRPQAVDLSAIARSVMDNLQQQDSRRVASICI HHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEE EGNLVVQADPMLLRLVMEELLGNAWKFTSRQSCTEISFGVREVAVGEVAQTVYEVRDNGV ECCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC GFEMAHAGKLFRSFQRLHSQVDFPGVGVGLANIRRIIVRHGGQIWAQSAIGQGASFCFTL CEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEE AYPRP CCCCC >Mature Secondary Structure AGLALAVGLVFTGLGAFWVHDSIQAEARARFGRQVDRLQSDVENRLNAPLVGLRGAAGV CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCH YAASHSVERAEFRAYVESLQLQRDFPGVRGYGFLAWMLRDDLGRFVSAERGDGAPAFSVN HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC AAGSAPDLYVVKYIEPEADNHPLLGEDLGADAVRREAIEGALATGMPTLSKAVMLSGASR CCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC QERGFVYLLPVFRTGTDPSTPAQRRAALVGLLFAPLAVGEVMSGAVAAVQGQADFELFDG CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCCCHHHHCC ARATADQLIYDFDGHLAAVRGEIGPAHYADRLLHASRAISAGGRTLTLHVSSTAAFEAQA CHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCC ASPLPALLGLGGAALSLLLAICIWLLGSSRARALAAAQRMTLSLAHEQQRLLSMVEGTNV CCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GTWEWNVQTGEIRLDERWAGIIGYTLGELQPVSIQTWRGQSHPDDLARSDALLEQHFAGQ CEEEEEEEECCEEECCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCC TSYYDFEARMRHKDGRWVWVLVRGRVSAWTDRRRPALMAGTLMDITERQMAQLALRNSEE CCEEEHHHHHHCCCCCEEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH HFRQLYETSLDGILQTRPDGQVLHANPAACELFGMSLDELRQRGRHGLVDPGDARLEPLL HHHHHHHHHHHHHEECCCCCCEEECCCCHHHEECCCHHHHHHCCCCCCCCCCHHHHHHHH EERQREGKAYGELRMLRSDGSYFECELSSSMYLDQGNQACANIVLRDITVRKRSEARITE HHHHHCCCHHHHHEEEECCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHH LNTELEQRVKRRTAQLEASNRDLQEFAHSVAHDLRQPIIAIGGFSGLLERMVTDPHGKHY HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCHHH LARIKAGVQQAGELTEALLALANLSRVQLRPQAVDLSAIARSVMDNLQQQDSRRVASICI HHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEE EGNLVVQADPMLLRLVMEELLGNAWKFTSRQSCTEISFGVREVAVGEVAQTVYEVRDNGV ECCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC GFEMAHAGKLFRSFQRLHSQVDFPGVGVGLANIRRIIVRHGGQIWAQSAIGQGASFCFTL CEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEE AYPRP CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]