| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is iaaA [H]
Identifier: 91786052
GI number: 91786052
Start: 148605
End: 149591
Strand: Reverse
Name: iaaA [H]
Synonym: Bpro_0141
Alternate gene names: 91786052
Gene position: 149591-148605 (Counterclockwise)
Preceding gene: 91786053
Following gene: 91786051
Centisome position: 2.88
GC content: 69.91
Gene sequence:
>987_bases GTGACACCCTCCAAGCCCCTGCCCGTCATCGCCATCCACGGTGGCGCCGGCACCATGAGCCGCAACCACATCAGCGCCGA GCAAACCGCGGCTTACCACGCTGCCCTGCAGGGCATCCTGCGGGTCGCGCAGCAATTGCTGGCCGATGGCGGCAGCGCGC TCGATGCCGTCAGCCTGGCCGTTGACCTGCTGGAAGACTGCCCGCTCTTCAATGCCGGCCATGGCTCTGTCTTCACCCAT GATGAAACCCATGAGCTGGACGCTGCCGTGATGGACGGCGCCACCCTGCGCGCCGGCGCGGTGGCTTGCGTGAGCCGCGT GCGCCGCCCCTTGCGCGCCGCCCGCGCCGTGATGGAGCACAGCGAGCATGTGCTGCTGGTGGGCGCCGGCGCCGAAGCCT TCGCCGAAGGCCTGGGGATGGAGATGGTTTCGCCCGATTACTTTTCAACCGAGGCCCGCCGCGAGCAATTGCGCCGCGCC CTGTCCACCGACCAGGCCATGCTGGACCATGACGGCGCGGCCCTGGTGTTCCGTCCCTCGGCAGCCGGCGCGGCGCCGCT GGATGATGACCGCAAATTCGGCACCGTGGGCGCTGTCGCGCTCGATGCACACGGCAACCTGGCCGCCGCCACCTCCACCG GCGGCATGACCAACAAACGGCCCGGCCGCGTCGGCGACACGCCCCTGATCGGCGCCGGCACCTATGCCGACAATCGCACG GCGGCCGTCTCCTGCACCGGCACCGGCGAAATGTTCATACGCACCGTGGCGGCCTACGACCTCTGCGCGCGCATGGCCTA CGGCGGCCTGTCGCTGGACGCGGCGGCGCAGCAGGTGGTGATGGACGTGCTGCCCGCCATGGGCGGCCGGGGCGGCCTGA TTGCCGTCGACGTGCAGGGCAAGCTGAGCCTTCCCTTCAACACCGAAGGCATGTACCGCGGCCATGCCCGCGTCGGTGAA GCGCCGCAGACCGCGATTTTTCGCTGA
Upstream 100 bases:
>100_bases TGCACGGCAGCCACAGCGGCCGGCTGCGCGCCGTGGCCGAGGCCGCGGCGCCTGCGCCCCGCAAGGCCAACGCCAAATCG AAATCCTCAAAGGCCCCCAA
Downstream 100 bases:
>100_bases TCGCCATCTGCGGCACGCTCCTTGCTGTTTCCACAAACATCTCACACGCATCCACCCCAAAAGCGCACCCCAATGCAACC CACCGTGGCCGAAGCCTCTC
Product: asparaginase
Products: NA
Alternate protein names: Beta-aspartyl-peptidase; EcAIII; Isoaspartyl dipeptidase [H]
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MTPSKPLPVIAIHGGAGTMSRNHISAEQTAAYHAALQGILRVAQQLLADGGSALDAVSLAVDLLEDCPLFNAGHGSVFTH DETHELDAAVMDGATLRAGAVACVSRVRRPLRAARAVMEHSEHVLLVGAGAEAFAEGLGMEMVSPDYFSTEARREQLRRA LSTDQAMLDHDGAALVFRPSAAGAAPLDDDRKFGTVGAVALDAHGNLAAATSTGGMTNKRPGRVGDTPLIGAGTYADNRT AAVSCTGTGEMFIRTVAAYDLCARMAYGGLSLDAAAQQVVMDVLPAMGGRGGLIAVDVQGKLSLPFNTEGMYRGHARVGE APQTAIFR
Sequences:
>Translated_328_residues MTPSKPLPVIAIHGGAGTMSRNHISAEQTAAYHAALQGILRVAQQLLADGGSALDAVSLAVDLLEDCPLFNAGHGSVFTH DETHELDAAVMDGATLRAGAVACVSRVRRPLRAARAVMEHSEHVLLVGAGAEAFAEGLGMEMVSPDYFSTEARREQLRRA LSTDQAMLDHDGAALVFRPSAAGAAPLDDDRKFGTVGAVALDAHGNLAAATSTGGMTNKRPGRVGDTPLIGAGTYADNRT AAVSCTGTGEMFIRTVAAYDLCARMAYGGLSLDAAAQQVVMDVLPAMGGRGGLIAVDVQGKLSLPFNTEGMYRGHARVGE APQTAIFR >Mature_327_residues TPSKPLPVIAIHGGAGTMSRNHISAEQTAAYHAALQGILRVAQQLLADGGSALDAVSLAVDLLEDCPLFNAGHGSVFTHD ETHELDAAVMDGATLRAGAVACVSRVRRPLRAARAVMEHSEHVLLVGAGAEAFAEGLGMEMVSPDYFSTEARREQLRRAL STDQAMLDHDGAALVFRPSAAGAAPLDDDRKFGTVGAVALDAHGNLAAATSTGGMTNKRPGRVGDTPLIGAGTYADNRTA AVSCTGTGEMFIRTVAAYDLCARMAYGGLSLDAAAQQVVMDVLPAMGGRGGLIAVDVQGKLSLPFNTEGMYRGHARVGEA PQTAIFR
Specific function: May be involved in glutathione, and possibly other peptide, transport, although these results could also be due to polar effects of disruption [H]
COG id: COG1446
COG function: function code E; Asparaginase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Ntn-hydrolase family [H]
Homologues:
Organism=Homo sapiens, GI145275202, Length=316, Percent_Identity=37.3417721518987, Blast_Score=171, Evalue=8e-43, Organism=Homo sapiens, GI145275200, Length=316, Percent_Identity=37.3417721518987, Blast_Score=171, Evalue=8e-43, Organism=Homo sapiens, GI98991769, Length=267, Percent_Identity=30.7116104868914, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI285002251, Length=241, Percent_Identity=33.195020746888, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI285002253, Length=241, Percent_Identity=31.1203319502075, Blast_Score=86, Evalue=3e-17, Organism=Escherichia coli, GI1787050, Length=320, Percent_Identity=60.9375, Blast_Score=375, Evalue=1e-105, Organism=Caenorhabditis elegans, GI32564649, Length=328, Percent_Identity=26.219512195122, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI18921183, Length=320, Percent_Identity=39.6875, Blast_Score=185, Evalue=4e-47, Organism=Drosophila melanogaster, GI21357893, Length=281, Percent_Identity=33.4519572953737, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI24652135, Length=235, Percent_Identity=32.7659574468085, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI221330102, Length=235, Percent_Identity=32.7659574468085, Blast_Score=112, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000246 [H]
Pfam domain/function: PF01112 Asparaginase_2 [H]
EC number: =3.4.19.5 [H]
Molecular weight: Translated: 33976; Mature: 33845
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPSKPLPVIAIHGGAGTMSRNHISAEQTAAYHAALQGILRVAQQLLADGGSALDAVSLA CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VDLLEDCPLFNAGHGSVFTHDETHELDAAVMDGATLRAGAVACVSRVRRPLRAARAVMEH HHHHHHCCCCCCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC SEHVLLVGAGAEAFAEGLGMEMVSPDYFSTEARREQLRRALSTDQAMLDHDGAALVFRPS CCEEEEEECCHHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHCCCHHHHCCCCCEEEEECC AAGAAPLDDDRKFGTVGAVALDAHGNLAAATSTGGMTNKRPGRVGDTPLIGAGTYADNRT CCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCE AAVSCTGTGEMFIRTVAAYDLCARMAYGGLSLDAAAQQVVMDVLPAMGGRGGLIAVDVQG EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECC KLSLPFNTEGMYRGHARVGEAPQTAIFR EEECCCCCCCCCCCCCCCCCCCHHHCCC >Mature Secondary Structure TPSKPLPVIAIHGGAGTMSRNHISAEQTAAYHAALQGILRVAQQLLADGGSALDAVSLA CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH VDLLEDCPLFNAGHGSVFTHDETHELDAAVMDGATLRAGAVACVSRVRRPLRAARAVMEH HHHHHHCCCCCCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC SEHVLLVGAGAEAFAEGLGMEMVSPDYFSTEARREQLRRALSTDQAMLDHDGAALVFRPS CCEEEEEECCHHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHCCCHHHHCCCCCEEEEECC AAGAAPLDDDRKFGTVGAVALDAHGNLAAATSTGGMTNKRPGRVGDTPLIGAGTYADNRT CCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCE AAVSCTGTGEMFIRTVAAYDLCARMAYGGLSLDAAAQQVVMDVLPAMGGRGGLIAVDVQG EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECC KLSLPFNTEGMYRGHARVGEAPQTAIFR EEECCCCCCCCCCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 3045084; 7984428 [H]