Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is 91785945

Identifier: 91785945

GI number: 91785945

Start: 33048

End: 34334

Strand: Reverse

Name: 91785945

Synonym: Bpro_0032

Alternate gene names: NA

Gene position: 34334-33048 (Counterclockwise)

Preceding gene: 91785946

Following gene: 91785944

Centisome position: 0.66

GC content: 69.62

Gene sequence:

>1287_bases
ATGAATGCCGACCGCTTTGAAGCCACCTACCTGATCGAGACCCCGCTCGAGCCCGCCCGGGTTGCCGAGGTGATGGCCGG
CGAGCAGTCCTGCGGCACCTTCACCCGCGTCGAGGGCGAAACCGATGCGCTGCGCCTGCGCGCCCGTGCCACGGTGGAGT
CGATCGAGGAACTGGCATCGGTGAACGCGCCCAGCCTGCCCAATGCCCTGCTCGAACGCCAGGGCCATACCGCACCCCAT
GGCGGCCCGTGGCGCCGTGCCCGCGTGCGCATCTCTTTTCCGGTGGCCAACGTCGGCGCCAACCTGCCGACGCTGGCCGC
CACCGTGTCCGGCAACCTCTATGACTTGGGCGAGGCCAGTGGTCTGCGGCTGGAGAGCATGAAGCTGCCCGCCGCCTACC
GCGCGCAGTTCGACCGGCCCAGGGTCGGCATCGCCGGCACGCGCCAGGCCACCGGCGTGGCCAGCGGCGCGCTGGTGGGC
ACCATCCTCAAGCCCAATGTCGGTTTTTCCGCAGCGCAGACCGCCGAACTGGTGGGAAGGCTGTGCGCAGCAGGCGTGGA
CTTCATCAAGGACGACGAGGTCTGCGCCGACCCGGCCCATGCCCCGCTGGCAAAACGGGTGCCCGCCGTGATGGCCGTGG
TACGCGCGCACCAGCAGCGCACCGGCAAGCACGTGATGGTGGCCTTCAACATCACCGACGAAACCGATGCGATGAAGCGC
CACGCCGACCTGGTCGAGCGCGAAGGCGGCTCCTGCGTCATGGCCAGCCTCAACTGGTGCGGCCATTCGGCCCTGCAGAC
GCTGCGCCGCCACACAGGGCTGGCGCTGCACGGCCACCGCAACGGTTACGGCGCGCTGTCGCGGCACCCGCTGCTGGGCA
TGTCCTTCCAGGCCTACCAGACCCTGTGGCGGCTGGCCGGCGTGGACCACATGCATGTACACGGCCTGCAGGGCAAGTTT
TCGCAACCCGATGCAGAGGTCATCGAATCAGCGCACGACTGCTACACGCCACTGGCCGACGGTGCCGATGGTTTTGACGA
CCGCGTCATGCCGGCCTTCTCGTCGGGCCAATGGGCCGGCACGGTGCCGGCGACCTGGGCCGCCGTGCAAAGCGATGACC
TGCTGTTCATGTCGGGCGGCGGCATCCTGGCGCACCCGGGCGGTCCGGCGGCCGGTGTCGCCAGCATCCGTCAGGCCTGG
GCGGCCGCACGCCAGGGTGTTGCGCTGGCCGAGTTTGCGCGCGAGGCGCCCGAGCTGGCTGCCGCGCTCGCCTTCTTCGG
CAAATAA

Upstream 100 bases:

>100_bases
GCCGGATGTTCGACCTGATCCGCGCCTCGTCCGAGGGCTGGGATGGCCGCGAGCCGGTGCGCCCCTTTCCCGACCTGAGC
AAACTCTGAAGCGCGCCGAC

Downstream 100 bases:

>100_bases
GCATGCAGGCGAGCCATAAAGACAGCACGCTGAAGATCGCCTACTACGGCGATGACTTCACGGGCGCCACCGACACGCTC
GCCACCGCCGCGCGCGCCGG

Product: RuBisCo-like protein

Products: 3-phospho-D-glycerate; H+

Alternate protein names: RuBisCO-like protein [H]

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELASVNAPSLPNALLERQGHTAPH
GGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEASGLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVG
TILKPNVGFSAAQTAELVGRLCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR
HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQTLWRLAGVDHMHVHGLQGKF
SQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAGTVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAW
AAARQGVALAEFAREAPELAAALAFFGK

Sequences:

>Translated_428_residues
MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELASVNAPSLPNALLERQGHTAPH
GGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEASGLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVG
TILKPNVGFSAAQTAELVGRLCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR
HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQTLWRLAGVDHMHVHGLQGKF
SQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAGTVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAW
AAARQGVALAEFAREAPELAAALAFFGK
>Mature_428_residues
MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELASVNAPSLPNALLERQGHTAPH
GGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEASGLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVG
TILKPNVGFSAAQTAELVGRLCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR
HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQTLWRLAGVDHMHVHGLQGKF
SQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAGTVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAW
AAARQGVALAEFAREAPELAAALAFFGK

Specific function: May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity [H]

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR000685
- InterPro:   IPR017443 [H]

Pfam domain/function: PF00016 RuBisCO_large [H]

EC number: 4.1.1.39

Molecular weight: Translated: 45345; Mature: 45345

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELAS
CCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
VNAPSLPNALLERQGHTAPHGGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEAS
CCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCEEEEECCCEEECCCCC
GLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVGTILKPNVGFSAAQTAELVGR
CCEEEHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHH
LCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQ
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHH
TLWRLAGVDHMHVHGLQGKFSQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAG
HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
TVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAWAAARQGVALAEFAREAPELA
CCCCCEEEECCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AALAFFGK
HHHHHHCC
>Mature Secondary Structure
MNADRFEATYLIETPLEPARVAEVMAGEQSCGTFTRVEGETDALRLRARATVESIEELAS
CCCCCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
VNAPSLPNALLERQGHTAPHGGPWRRARVRISFPVANVGANLPTLAATVSGNLYDLGEAS
CCCCCCCHHHHHCCCCCCCCCCCCCEEEEEEECCHHHCCCCCCCEEEEECCCEEECCCCC
GLRLESMKLPAAYRAQFDRPRVGIAGTRQATGVASGALVGTILKPNVGFSAAQTAELVGR
CCEEEHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHH
LCAAGVDFIKDDEVCADPAHAPLAKRVPAVMAVVRAHQQRTGKHVMVAFNITDETDAMKR
HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH
HADLVEREGGSCVMASLNWCGHSALQTLRRHTGLALHGHRNGYGALSRHPLLGMSFQAYQ
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHH
TLWRLAGVDHMHVHGLQGKFSQPDAEVIESAHDCYTPLADGADGFDDRVMPAFSSGQWAG
HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
TVPATWAAVQSDDLLFMSGGGILAHPGGPAAGVASIRQAWAAARQGVALAEFAREAPELA
CCCCCEEEECCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
AALAFFGK
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-ribulose 1,5-bisphosphate; CO2; H2O

Specific reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate + 2 H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]