| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ybhN [H]
Identifier: 91785937
GI number: 91785937
Start: 23414
End: 24430
Strand: Reverse
Name: ybhN [H]
Synonym: Bpro_0024
Alternate gene names: 91785937
Gene position: 24430-23414 (Counterclockwise)
Preceding gene: 91785938
Following gene: 91785935
Centisome position: 0.47
GC content: 65.78
Gene sequence:
>1017_bases ATGACCACCAGCCCCGACGCAGCCCGCCCCGCAGTCCCGGCCCCGCGGCGCAAGAGCCGGCATAAATTCACCGGCAAAGC CTGGTGGCCATGGCTCAAGCGCGGCGCCAGCGTGGTGTTCTTTGCACTGGTGATCGGCCTGCTGGTGTCCCAGGCACGCC ACATCGAATGGCATCAGGTGCTCACCTCGCTGCAGCGCTATCCACTCACCGCCGCCTGGGGCGCCGTGCTGCTCGCCCTG ACGAGTTTCGCGCTCTACAGCACCTTCGACCTGCTCGGGCGGCATTACACCGACCACACCCTGCCTGCGCCCACCGTGAT GCTGGTCACCTTCATCAGCTACGCCTTCAACCTCAACCTCGGCTCGCTGGTGGGCGGCGTCGCCTTCCGCTTCCGCCTGT ATTCACGCCTGGGCCTGCCCACCGGGGTCATCACCCGCATCATGTCGCTGAGCATGCTCAGCAACTGGATGGGCTATCTG CTGCTGGGCGGCCTGATCTTCAGCCTGCGGCCCCCCGCCGTGCCCGCCGACTGGGGCATAGACACCGCACACCTGCGCCT GATCGGTTTTGCCTTGCTGGCCGGTGCCGCGGGCTACCTGGGCGTGTGCGTGTTTTCGCGCCAACGCGTGTTCTGGCTGC GCGGCCACGAGATTGACCTGCCCTCGGTCAGGCTGGCCGGCCTGCAGCTGGTGATGGGCGCCACCAACTGGCTGGTGATG TCGGGCATTATTTTCATCCTGCTGCAGCACCGCATCGAGTTTTCCGCCGTCGTCAGCGTGCTGCTGCTGGCTGCCATCGC CGGCGTGATCACCCACATACCGGGCAACCTGGGGGTGCTGGAGGCGGTCTTCGTGGCCCTGCTGTCGCACCAGATGGCCC GGCATGAATTGCTGGCTGCGCTGGTGGCATACCGGGTTATTTACTACCTGATGCCGCTGGGCATCGCGACGGTGGCCTAC CTCATCATTGAAACCCGAGCCAAAAAGGCCAGCAGTCCGGGCAAGCAGGCCGCGTAG
Upstream 100 bases:
>100_bases CTCACGCCTGCGCTGGCACCCGCCGACCCGACGGCGCACATCAGCACCGCGCAGGCAGACGCCGTCCACCGCGCGGACCC GACCACCCCGTGAGCCGTGA
Downstream 100 bases:
>100_bases GCTACCTGTGCCCCCACCAAACCTCCCGGGATTTTTCAACCTGGAAACGGCAGTTGGATGCGTCCGAGTGCGCCGTGATC GGCGTGCCAGGCAAGGCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MTTSPDAARPAVPAPRRKSRHKFTGKAWWPWLKRGASVVFFALVIGLLVSQARHIEWHQVLTSLQRYPLTAAWGAVLLAL TSFALYSTFDLLGRHYTDHTLPAPTVMLVTFISYAFNLNLGSLVGGVAFRFRLYSRLGLPTGVITRIMSLSMLSNWMGYL LLGGLIFSLRPPAVPADWGIDTAHLRLIGFALLAGAAGYLGVCVFSRQRVFWLRGHEIDLPSVRLAGLQLVMGATNWLVM SGIIFILLQHRIEFSAVVSVLLLAAIAGVITHIPGNLGVLEAVFVALLSHQMARHELLAALVAYRVIYYLMPLGIATVAY LIIETRAKKASSPGKQAA
Sequences:
>Translated_338_residues MTTSPDAARPAVPAPRRKSRHKFTGKAWWPWLKRGASVVFFALVIGLLVSQARHIEWHQVLTSLQRYPLTAAWGAVLLAL TSFALYSTFDLLGRHYTDHTLPAPTVMLVTFISYAFNLNLGSLVGGVAFRFRLYSRLGLPTGVITRIMSLSMLSNWMGYL LLGGLIFSLRPPAVPADWGIDTAHLRLIGFALLAGAAGYLGVCVFSRQRVFWLRGHEIDLPSVRLAGLQLVMGATNWLVM SGIIFILLQHRIEFSAVVSVLLLAAIAGVITHIPGNLGVLEAVFVALLSHQMARHELLAALVAYRVIYYLMPLGIATVAY LIIETRAKKASSPGKQAA >Mature_337_residues TTSPDAARPAVPAPRRKSRHKFTGKAWWPWLKRGASVVFFALVIGLLVSQARHIEWHQVLTSLQRYPLTAAWGAVLLALT SFALYSTFDLLGRHYTDHTLPAPTVMLVTFISYAFNLNLGSLVGGVAFRFRLYSRLGLPTGVITRIMSLSMLSNWMGYLL LGGLIFSLRPPAVPADWGIDTAHLRLIGFALLAGAAGYLGVCVFSRQRVFWLRGHEIDLPSVRLAGLQLVMGATNWLVMS GIIFILLQHRIEFSAVVSVLLLAAIAGVITHIPGNLGVLEAVFVALLSHQMARHELLAALVAYRVIYYLMPLGIATVAYL IIETRAKKASSPGKQAA
Specific function: Unknown
COG id: COG0392
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To Synechocystis PCC 6803 slr0712 [H]
Homologues:
Organism=Escherichia coli, GI1787006, Length=310, Percent_Identity=43.8709677419355, Blast_Score=248, Evalue=3e-67,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022791 [H]
Pfam domain/function: PF03706 UPF0104 [H]
EC number: NA
Molecular weight: Translated: 37024; Mature: 36892
Theoretical pI: Translated: 11.03; Mature: 11.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSPDAARPAVPAPRRKSRHKFTGKAWWPWLKRGASVVFFALVIGLLVSQARHIEWHQV CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHH LTSLQRYPLTAAWGAVLLALTSFALYSTFDLLGRHYTDHTLPAPTVMLVTFISYAFNLNL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH GSLVGGVAFRFRLYSRLGLPTGVITRIMSLSMLSNWMGYLLLGGLIFSLRPPAVPADWGI HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC DTAHLRLIGFALLAGAAGYLGVCVFSRQRVFWLRGHEIDLPSVRLAGLQLVMGATNWLVM CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH SGIIFILLQHRIEFSAVVSVLLLAAIAGVITHIPGNLGVLEAVFVALLSHQMARHELLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH LVAYRVIYYLMPLGIATVAYLIIETRAKKASSPGKQAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure TTSPDAARPAVPAPRRKSRHKFTGKAWWPWLKRGASVVFFALVIGLLVSQARHIEWHQV CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHH LTSLQRYPLTAAWGAVLLALTSFALYSTFDLLGRHYTDHTLPAPTVMLVTFISYAFNLNL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH GSLVGGVAFRFRLYSRLGLPTGVITRIMSLSMLSNWMGYLLLGGLIFSLRPPAVPADWGI HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC DTAHLRLIGFALLAGAAGYLGVCVFSRQRVFWLRGHEIDLPSVRLAGLQLVMGATNWLVM CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH SGIIFILLQHRIEFSAVVSVLLLAAIAGVITHIPGNLGVLEAVFVALLSHQMARHELLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH LVAYRVIYYLMPLGIATVAYLIIETRAKKASSPGKQAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]