| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91785926
Identifier: 91785926
GI number: 91785926
Start: 12504
End: 12926
Strand: Direct
Name: 91785926
Synonym: Bpro_0013
Alternate gene names: NA
Gene position: 12504-12926 (Clockwise)
Preceding gene: 91785925
Following gene: 91785927
Centisome position: 0.24
GC content: 64.07
Gene sequence:
>423_bases GTGAGCTACCTGATTGACACCAACGTGATCTCGGAACTGGTTCGCCCGAAACCTGACCCCGCCGTGCTGCACTGGTTTGC CAACACACCGGATGATGCCCTGTTTTTGAGCGCCTTGACGCTGGGCGAAATTCGCAAGGGCGTCGAGAAACTGGCCGACA CCCAGCGCCGTGAAGAACTTCGCCTCTGGCTGGAGCATGACCTGCGCGACTGGTTTGGCCCGCGCATCCTGCCGATTGGC CCGGACGTGGCCGACCACTGGGGCCGGCTGCTGGCGCAGGCGGGCCGTCCCGTGCCTGCCATCGACAGCCTGCTGGCTGC TACAGCGCTGCATCACGACTTGCGGCTGGTCACCCGCAACACCAGAGATTTTGACTACGCGGGCCTGGAGGTTATCAATC CGTGGGAGACGGCGGCGGGCTGA
Upstream 100 bases:
>100_bases ACCCCAAACCCAGGTTTGTCGAGTTCATGCGCCGCTCTCCAATGGCCGGGCTGGAGCTGGATACCGGGCGACATACAGGT TTGACGCGCGAGATCGCGCT
Downstream 100 bases:
>100_bases GCCGCAAGGCGTCCTGGGCTTCTGCCATCGCGCGGTAAAGCGCGGGCCGCAGTGTTAACAGGCCCTGGCGCGAGGTGGTG AGGCCATGGGGCGCAAGGAA
Product: PilT protein-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MSYLIDTNVISELVRPKPDPAVLHWFANTPDDALFLSALTLGEIRKGVEKLADTQRREELRLWLEHDLRDWFGPRILPIG PDVADHWGRLLAQAGRPVPAIDSLLAATALHHDLRLVTRNTRDFDYAGLEVINPWETAAG
Sequences:
>Translated_140_residues MSYLIDTNVISELVRPKPDPAVLHWFANTPDDALFLSALTLGEIRKGVEKLADTQRREELRLWLEHDLRDWFGPRILPIG PDVADHWGRLLAQAGRPVPAIDSLLAATALHHDLRLVTRNTRDFDYAGLEVINPWETAAG >Mature_139_residues SYLIDTNVISELVRPKPDPAVLHWFANTPDDALFLSALTLGEIRKGVEKLADTQRREELRLWLEHDLRDWFGPRILPIGP DVADHWGRLLAQAGRPVPAIDSLLAATALHHDLRLVTRNTRDFDYAGLEVINPWETAAG
Specific function: Involved in plasmid stability (Potential) [H]
COG id: COG1487
COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002716 [H]
Pfam domain/function: PF01850 PIN [H]
EC number: NA
Molecular weight: Translated: 15794; Mature: 15663
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYLIDTNVISELVRPKPDPAVLHWFANTPDDALFLSALTLGEIRKGVEKLADTQRREEL CCEEECHHHHHHHHCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLWLEHDLRDWFGPRILPIGPDVADHWGRLLAQAGRPVPAIDSLLAATALHHDLRLVTRN HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC TRDFDYAGLEVINPWETAAG CCCCCCCCCEEECCCCCCCC >Mature Secondary Structure SYLIDTNVISELVRPKPDPAVLHWFANTPDDALFLSALTLGEIRKGVEKLADTQRREEL CEEECHHHHHHHHCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RLWLEHDLRDWFGPRILPIGPDVADHWGRLLAQAGRPVPAIDSLLAATALHHDLRLVTRN HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC TRDFDYAGLEVINPWETAAG CCCCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]