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The map label for this gene is ypjD [C]

Identifier: 91785262

GI number: 91785262

Start: 4308742

End: 4309659

Strand: Reverse

Name: ypjD [C]

Synonym: Bxe_A0517

Alternate gene names: 91785262

Gene position: 4309659-4308742 (Counterclockwise)

Preceding gene: 91785265

Following gene: 91785261

Centisome position: 88.03

GC content: 65.9

Gene sequence:

>918_bases
ATGGATATTGTACTGTATGCCCTCACTGCGCTCCTCTACGGCGGATTAGCCGTGGCCGGCTGGCGCTCGCACCGGCACGC
CGCCGTGTGCCCCATGCTCGAAAGCGTGCCGCCGGTGCCGGCCGCCGCGGGCGGTTCGGCCGCTTCGGGCATGAGCACGT
CGGGCCGCGCGCTGCTGTTCGTGGCGCTGCTCGCGCACGGCGTGCTGCTGCATACCACCATCTTTCCCCAGAACGCGATG
GTGTTCGGCTTCGCGTTCGCGCTGTCGGCCATGTTCTGGCTGGGCGCGGGCATCTACTGGATCGAGAGTTTTTTCTTTCC
GCTCGACGGTCTGCGCCTGCTGGTTCTGCCGCTCGCGTGCGTCGCCTCGCTGTTGCCGCTTGCGTTCAACGGCGTGCGCG
TGCTGCCGTATTCCGCCGCGCCGATGTTCAAGCTGCACTTCCTGATCGCCAACATCGCGTATGGTCTGTTCGCGATTGCG
GCGCTGCATGCGGTTCTGATGCTGCTGGTCGAGCGGCGTTTGCACGCCATGCGCGGCGGCGTCGCGCAGCGGCATGCGGC
CGCGGCGGGCAACGGCTGGCTGTCGAGCTGGCTCGATACGCTGCCGCCGCTCCTCACGCTGGAGAAGCTGCTGTTCCGTC
TGATCGGCGCGGGTTTTGTCCTGCTCACGCTCACGCTGGTGTCGGGCATCCTGTTCAGCGAGCAACTGGTCGATCGTGCG
TTGCAGCTCGATCACAAGACCGTGTTCGCGATTCTTTCGTGGGTGATGTTCGGCGCGCTGCTGACCGCGCGCAAGGTTTC
CGGCTGGCGTGGCCGTGCGGCATTGCGCTGGGTGCTGGCGTCGTTCGTCGCGCTGTTGCTGGCGTACGTCGGCAGCCGTT
TTGTTTTCGAGGTGCTGTTGCACCGTGCTGTAGTGTGA

Upstream 100 bases:

>100_bases
GAGTCAGATTGTCGAGCATGGGGAGCGATGAACAGTGCGGCCGGAGCAGGGCGCGATGCAGGAGACGTCGCGGAGCAGGG
GCCTAGTGTAAACTTCGAAT

Downstream 100 bases:

>100_bases
GCGTGTCCCATGCGACAAATATTTCTGCTGATCCTGTTGTTCATCGTCGGCCAGTGGCTGGTGAAGGCGCTGCGTCGTCA
TGACGCGCAGGCGTCCCAGC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDIVLYALTALLYGGLAVAGWRSHRHAAVCPMLESVPPVPAAAGGSAASGMSTSGRALLFVALLAHGVLLHTTIFPQNAM
VFGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACVASLLPLAFNGVRVLPYSAAPMFKLHFLIANIAYGLFAIA
ALHAVLMLLVERRLHAMRGGVAQRHAAAAGNGWLSSWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLVSGILFSEQLVDRA
LQLDHKTVFAILSWVMFGALLTARKVSGWRGRAALRWVLASFVALLLAYVGSRFVFEVLLHRAVV

Sequences:

>Translated_305_residues
MDIVLYALTALLYGGLAVAGWRSHRHAAVCPMLESVPPVPAAAGGSAASGMSTSGRALLFVALLAHGVLLHTTIFPQNAM
VFGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACVASLLPLAFNGVRVLPYSAAPMFKLHFLIANIAYGLFAIA
ALHAVLMLLVERRLHAMRGGVAQRHAAAAGNGWLSSWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLVSGILFSEQLVDRA
LQLDHKTVFAILSWVMFGALLTARKVSGWRGRAALRWVLASFVALLLAYVGSRFVFEVLLHRAVV
>Mature_305_residues
MDIVLYALTALLYGGLAVAGWRSHRHAAVCPMLESVPPVPAAAGGSAASGMSTSGRALLFVALLAHGVLLHTTIFPQNAM
VFGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLACVASLLPLAFNGVRVLPYSAAPMFKLHFLIANIAYGLFAIA
ALHAVLMLLVERRLHAMRGGVAQRHAAAAGNGWLSSWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLVSGILFSEQLVDRA
LQLDHKTVFAILSWVMFGALLTARKVSGWRGRAALRWVLASFVALLLAYVGSRFVFEVLLHRAVV

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 32918; Mature: 32918

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVLYALTALLYGGLAVAGWRSHRHAAVCPMLESVPPVPAAAGGSAASGMSTSGRALLF
CHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
VALLAHGVLLHTTIFPQNAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLAC
HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VASLLPLAFNGVRVLPYSAAPMFKLHFLIANIAYGLFAIAALHAVLMLLVERRLHAMRGG
HHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VAQRHAAAAGNGWLSSWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLVSGILFSEQLVDRA
HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQLDHKTVFAILSWVMFGALLTARKVSGWRGRAALRWVLASFVALLLAYVGSRFVFEVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRAVV
HHHCC
>Mature Secondary Structure
MDIVLYALTALLYGGLAVAGWRSHRHAAVCPMLESVPPVPAAAGGSAASGMSTSGRALLF
CHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
VALLAHGVLLHTTIFPQNAMVFGFAFALSAMFWLGAGIYWIESFFFPLDGLRLLVLPLAC
HHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VASLLPLAFNGVRVLPYSAAPMFKLHFLIANIAYGLFAIAALHAVLMLLVERRLHAMRGG
HHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VAQRHAAAAGNGWLSSWLDTLPPLLTLEKLLFRLIGAGFVLLTLTLVSGILFSEQLVDRA
HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQLDHKTVFAILSWVMFGALLTARKVSGWRGRAALRWVLASFVALLLAYVGSRFVFEVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HRAVV
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7553451 [H]