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The map label for this gene is araH [H]

Identifier: 91785231

GI number: 91785231

Start: 4277372

End: 4278388

Strand: Reverse

Name: araH [H]

Synonym: Bxe_A0548

Alternate gene names: 91785231

Gene position: 4278388-4277372 (Counterclockwise)

Preceding gene: 91785232

Following gene: 91785230

Centisome position: 87.39

GC content: 61.75

Gene sequence:

>1017_bases
ATGCAAGCCAGAGAAAACCTCGCGCAACAGGCCGCCAAGGGCGCAGCCGAAGCGCTGATTCCGCAGACCAACGACAAGGC
GAAATGGTGGCAGCAGATCACCGAGTACAGCCTGATCGTGATCTTTGTGGTGATGTTCGCCACCATGTCGCTGACCGTCG
ATCACTTCTTCTCGATCGAGAACATGCTCGGCCTCGCGCTGTCGATCTCGCAGATCGGCATGGTGGCGTGCACGATGATG
TTCTGCCTCGCCTCGCGCGATTTCGACCTTTCGGTGGGTTCGACGGTCGCGTTCGCCGGCGTGCTGTGCGCGATGGTGCT
CAACGCCACCGGCAACACGTTTATCGCGATCGTCGCGGCGGTGGCGGCGGGCGCCGTGATCGGTTTCGTCAACGGCGCGG
TGATCGCGTATCTGCGCATCAACGCGCTGATCACGACGCTCGCCACGATGGAAATCGTCCGTGGTCTCGGCTTTATCGTC
TCGCACGGTCAGGCGGTCGGCGTGTCGTCGGATACGTTTATCGCGCTGGGCGGCTTGAGCTTCTTCGGCGTGTCGCTGCC
GATCTGGGTCACGCTGCTGTGCTTCATCGTGTTCGGCGTGATGCTCAACCAGACCGTGTATGGCCGCAATACGCTCGCGA
TCGGCGGCAATCCGGAAGCGTCGCGTCTGGCCGGTATCAATGTGGAGCGCACGCGCGTCTACATCTTCCTGATTCAGGGC
GCGGTGACTGCACTGGCCGGTGTGATTCTGGCCTCGCGCATCACATCGGGTCAGCCGAATGCCGCGGAAGGCTTCGAGCT
GAACGTGATCTCGGCGTGCGTGCTGGGCGGCGTCTCGCTGCTCGGCGGACGTGCGACGATTTCCGGCGTGGTGATCGGCG
TGCTGATCATGGGCACGGTCGAAAACGTGATGAACCTGATGAACATCGACGCGTTCTATCAGTATCTGGTGCGTGGCGCG
ATCCTGCTCGCCGCCGTGCTGCTCGACCAGTTGAAGAATCGCGGATCACGAGATTAA

Upstream 100 bases:

>100_bases
CTGGCACCGACGCCGGAACGGAAACCGCCGCCCAACAGGCGGCCTGAACATCATCGGACGAAAGTCCGGCAACCCGTGGG
GAACGGGAGGAGTCTTCAAC

Downstream 100 bases:

>100_bases
ATCCGCGACCAGCTTACTTGCTCTAAAAGGAATCGAACGATGTCGTCTCCGGCCAATGCAAACGCCCGTCTCGCGGAGAG
CGCCTTCGCCCGCTATCCGA

Product: L-arabinose transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQARENLAQQAAKGAAEALIPQTNDKAKWWQQITEYSLIVIFVVMFATMSLTVDHFFSIENMLGLALSISQIGMVACTMM
FCLASRDFDLSVGSTVAFAGVLCAMVLNATGNTFIAIVAAVAAGAVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSDTFIALGGLSFFGVSLPIWVTLLCFIVFGVMLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGSRD

Sequences:

>Translated_338_residues
MQARENLAQQAAKGAAEALIPQTNDKAKWWQQITEYSLIVIFVVMFATMSLTVDHFFSIENMLGLALSISQIGMVACTMM
FCLASRDFDLSVGSTVAFAGVLCAMVLNATGNTFIAIVAAVAAGAVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSDTFIALGGLSFFGVSLPIWVTLLCFIVFGVMLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGSRD
>Mature_338_residues
MQARENLAQQAAKGAAEALIPQTNDKAKWWQQITEYSLIVIFVVMFATMSLTVDHFFSIENMLGLALSISQIGMVACTMM
FCLASRDFDLSVGSTVAFAGVLCAMVLNATGNTFIAIVAAVAAGAVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SHGQAVGVSSDTFIALGGLSFFGVSLPIWVTLLCFIVFGVMLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGSRD

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=308, Percent_Identity=57.4675324675325, Blast_Score=335, Evalue=2e-93,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=35.4838709677419, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788896, Length=311, Percent_Identity=31.8327974276527, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789992, Length=359, Percent_Identity=33.4261838440111, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=29.375, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787793, Length=275, Percent_Identity=31.2727272727273, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788471, Length=268, Percent_Identity=36.1940298507463, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082395, Length=244, Percent_Identity=31.1475409836066, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787794, Length=261, Percent_Identity=27.5862068965517, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI145693214, Length=229, Percent_Identity=31.0043668122271, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35572; Mature: 35572

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQARENLAQQAAKGAAEALIPQTNDKAKWWQQITEYSLIVIFVVMFATMSLTVDHFFSIE
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSVGSTVAFAGVLCAMVLNATGNTFIAIVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
VAAGAVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSHGQAVGVSSDTFIALGGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCHH
FFGVSLPIWVTLLCFIVFGVMLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCHHHHCCCCEEHHEEEEEEHHH
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ENVMNLMNIDAFYQYLVRGAILLAAVLLDQLKNRGSRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQARENLAQQAAKGAAEALIPQTNDKAKWWQQITEYSLIVIFVVMFATMSLTVDHFFSIE
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSVGSTVAFAGVLCAMVLNATGNTFIAIVAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
VAAGAVIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSHGQAVGVSSDTFIALGGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCHH
FFGVSLPIWVTLLCFIVFGVMLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEECCCCCHHHHCCCCEEHHEEEEEEHHH
AVTALAGVILASRITSGQPNAAEGFELNVISACVLGGVSLLGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ENVMNLMNIDAFYQYLVRGAILLAAVLLDQLKNRGSRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]