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The map label for this gene is xerD [H]

Identifier: 91785030

GI number: 91785030

Start: 4051919

End: 4052854

Strand: Reverse

Name: xerD [H]

Synonym: Bxe_A0750

Alternate gene names: 91785030

Gene position: 4052854-4051919 (Counterclockwise)

Preceding gene: 91785031

Following gene: 91785028

Centisome position: 82.78

GC content: 65.28

Gene sequence:

>936_bases
ATGAGCGATACCTTGATCGACGACGCGCCCGCCGCGTCACCTCTCTTTGTTGCCAGCTCGGCGTCGATCGACGCATTCTG
CGACGCGCTGTGGCTCGAACATGGCCTGTCGCGCAACACGCTCGACGCGTACCGCCGCGATCTGCGTCTCTTTTGCGAAT
GGCTCGCGCAGAGCCGCAATGCTTCGCTCGACACCGCAAGCGAAGCCGATCTGAACGCGTATAGCGCTGCACGGCAGAAG
GACAAATCGACCTCGGCGAACAGGCGGCTCTCGGTGTTTCGCCGCTACTACGGCTGGGCGGTGCGCGAGCATCGCGCGAA
GGTCGATCCGACGGTGCGCATCCGTTCGGCGAAACAGCCGCCGCGTTTTCCGTCCACGCTCACCGAAGCGCAAGTCGAAG
CGCTGCTCGGCGCGCCCGACGTCGATACGCCGTTGGGTCTGCGCGACCGTACGATGCTGGAGCTGATGTACGCGAGCGGT
CTGCGCGTGACCGAACTCGTCACGCTGAAAACCGTGGAAGTGGGCCTGAACGAGGGCGTGGTGCGCGTCATGGGCAAAGG
CTCGAAGGAGCGCCTGATTCCGTTCGGCGAAGAGGCGCACGGCTGGATCGAACGCTATCTGCGCGAGGCGCGGCCCGCAT
TGCTCGGCGCGCGCGCGACAGACGCGCTGTTCGTGACGGGCCGCGCGGAGGGTATGACGCGCCAGCAGTTCTGGAACATC
ATCAAGCGTCACGCGGCGGCGGCCGGTGTGAATGCGCCGTTGTCGCCGCACACGTTGCGGCACGCGTTCGCCACGCATCT
GCTCAATCACGGCGCCGACCTGCGTGTCGTGCAACTGCTGCTCGGCCACACGGATATTTCGACCACGCAGATCTACACGC
ACGTGGCCCGTGAACGGTTGAAGTCGCTGCATGCGCAGCATCATCCGCGGGGTTGA

Upstream 100 bases:

>100_bases
TGAGTTCGAGCGGCATCGGCGGTTTTGCGAATCACGCCGAAGAGGGTTTCTTCCGCAACGTGAAGCGCTGGCTGCTGGCG
CATGAAGGCATTCCCTACGC

Downstream 100 bases:

>100_bases
TTTGCGCTCGCGGTGGCGCTTGCCCTTGCGCTTGCCCTTTGCTCAGAGAAACTCGCGCAGCCGATGCTTGAGAATCTTGC
CGGTCGATGCGGCCGGCAGC

Product: site-specific tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSDTLIDDAPAASPLFVASSASIDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAYSAARQK
DKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVEALLGAPDVDTPLGLRDRTMLELMYASG
LRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNI
IKRHAAAAGVNAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPRG

Sequences:

>Translated_311_residues
MSDTLIDDAPAASPLFVASSASIDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAYSAARQK
DKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVEALLGAPDVDTPLGLRDRTMLELMYASG
LRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNI
IKRHAAAAGVNAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPRG
>Mature_310_residues
SDTLIDDAPAASPLFVASSASIDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAYSAARQKD
KSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVEALLGAPDVDTPLGLRDRTMLELMYASGL
RVTELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNII
KRHAAAAGVNAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKSLHAQHHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=294, Percent_Identity=57.1428571428571, Blast_Score=325, Evalue=2e-90,
Organism=Escherichia coli, GI1790244, Length=296, Percent_Identity=36.8243243243243, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1790768, Length=168, Percent_Identity=34.5238095238095, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1790767, Length=172, Percent_Identity=27.3255813953488, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34630; Mature: 34499

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTLIDDAPAASPLFVASSASIDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAQSRN
CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
ASLDTASEADLNAYSAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQP
CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
PRFPSTLTEAQVEALLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGV
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHEEHHHHHHCCCCCH
VRVMGKGSKERLIPFGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNI
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
IKRHAAAAGVNAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERL
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
KSLHAQHHPRG
HHHHHHCCCCC
>Mature Secondary Structure 
SDTLIDDAPAASPLFVASSASIDAFCDALWLEHGLSRNTLDAYRRDLRLFCEWLAQSRN
CCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
ASLDTASEADLNAYSAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQP
CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
PRFPSTLTEAQVEALLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGV
CCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHEEHHHHHHCCCCCH
VRVMGKGSKERLIPFGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNI
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH
IKRHAAAAGVNAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERL
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
KSLHAQHHPRG
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]