| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is frc [H]
Identifier: 91784998
GI number: 91784998
Start: 4015164
End: 4016555
Strand: Reverse
Name: frc [H]
Synonym: Bxe_A0782
Alternate gene names: 91784998
Gene position: 4016555-4015164 (Counterclockwise)
Preceding gene: 91785003
Following gene: 91784996
Centisome position: 82.04
GC content: 68.75
Gene sequence:
>1392_bases ATGACGCCTGAACTCGCTCTCAAACATATCTGGACGCTTGCCGGGTGCGACCCGAGCGCGCTGAGGTCTGTCACGCTCAC GGGCGCGGATCCCGGTTTGCCGTCCGTCTACCGGGTGGGCACCCTCGCTTCGGCAAGCATCGCCGCGACCGGACTCGCGG CCGCCGAATACCACCGTCTGCGCACAGGTCGCAGGCAACACGTGACGGTGGCGATGCGGCGAGCGCTGGCGTCGTTTCGC AGCGAACGCTATTTGCGTATCAACGACGGCCCGCCGCCCGCGTTGCGCGATCCGGTGATGGGCTTCTACGAGACGCGCGA CGGCCGCTGGATTCAACTGCACACGAACTTCCCGCATCATCTGCAGGGCGTATTGAACGTACTTGGCTGCGCGAACGGTC GGGATGCGGTGGCCGCCGCGATTCGCGGCTGGGACGGCGCGACGCTCGACCAGACGCTCGCCGACGCGGGCCTGTGCGCG GCGTTGATTCGCACGCCGGATGAGTGGGCCGCGCTCGATCAGGCCAAAGCGATTGCGGGCTTGCCGCTCTTCGAGATCGA GCGCATCGGCGACGCGCCCACGGAATCGCCCGGTCAGCGTGGCGCGGACCGGCCGCTGGCGGGTGTGCGCGTGCTGGATC TGTCGCGCATCATCGCCGGGCCCGTCGCCGGCCGTGCGCTCGCGCAGCATGGCGCGCAGGTGCTGATGATCAACGGGCCG CATCTGCCGAACATTGCGCCGCTGGTGATCGACAACGGTCGCGGCAAGCGCTCGGCGCTCGTCGATCTGCGCGAAGCGCA GGGGCGCGAGGTTCTGCGCGGCCTTGCCGGCGCCGCCGATGTATTTCTGCAGGCATATCGCCCGGGAGCATTGGCCGCGC GCGGTTTCGGTCCCGAGGAGCTGGCGCGTATGCGGCCGGGGATCGTCTACGTTTCGGTGTCGGCCTATGGGCACGAGGGA CCTTGGGCTCAGCGGCGCGGTTTCGACAGTCTGGTGCAGTCGGCAAGCGGAATCGCGTTTACCGAACGCCAGGCGGCGGG GTGGAACGAGCCGAAGCATCTGCCGTGTCAGGCGCTGGATCATGCGACCGGGTATCTGGCGGCCTTCGGTGCGATGGCCG CGCTGGCACGGCGGGCAACCGAAGGCGGAAGCTGGCATGTGCGCGTTTCGCTCGCGCAAACGGGCCGGTGGCTGCAGTCG TTCGGGCAGATTCCCGAGGGCTGGAAAGCGCCCGAGGTCGCGCTCGATGATGTGCGCGATTGCCTCGCGAGCGTGGAGTC GGAGTTTGGCCGCGTGCTGGGAGTGCAACCGGCCGAGGTGCTGGACGAGACGCCTGCGTTTTTCGCGCTGCCGCCAAGCC GCGTGGGCGCGCACGAGGCCAGGTGGGAGTGA
Upstream 100 bases:
>100_bases CGAAGAAATCAATATATGTTGATTATCATAATCAAGATTGATTGCGGCGTGGCGGACTTCTAGACTCGGTGCACTTCCTC CTGCTCTGTTATGGAACGCC
Downstream 100 bases:
>100_bases GGTGCCCTTACTTCCTCAATTCCGCCACGAAGTCGTAGTAATCGTTGCGGCAGTACGTGTCGGTCAACTCGATCGCCCGC TGATCGGCGGTGTAGCCCAC
Product: putative CoA transferase family protein
Products: NA
Alternate protein names: Formyl-CoA transferase [H]
Number of amino acids: Translated: 463; Mature: 462
Protein sequence:
>463_residues MTPELALKHIWTLAGCDPSALRSVTLTGADPGLPSVYRVGTLASASIAATGLAAAEYHRLRTGRRQHVTVAMRRALASFR SERYLRINDGPPPALRDPVMGFYETRDGRWIQLHTNFPHHLQGVLNVLGCANGRDAVAAAIRGWDGATLDQTLADAGLCA ALIRTPDEWAALDQAKAIAGLPLFEIERIGDAPTESPGQRGADRPLAGVRVLDLSRIIAGPVAGRALAQHGAQVLMINGP HLPNIAPLVIDNGRGKRSALVDLREAQGREVLRGLAGAADVFLQAYRPGALAARGFGPEELARMRPGIVYVSVSAYGHEG PWAQRRGFDSLVQSASGIAFTERQAAGWNEPKHLPCQALDHATGYLAAFGAMAALARRATEGGSWHVRVSLAQTGRWLQS FGQIPEGWKAPEVALDDVRDCLASVESEFGRVLGVQPAEVLDETPAFFALPPSRVGAHEARWE
Sequences:
>Translated_463_residues MTPELALKHIWTLAGCDPSALRSVTLTGADPGLPSVYRVGTLASASIAATGLAAAEYHRLRTGRRQHVTVAMRRALASFR SERYLRINDGPPPALRDPVMGFYETRDGRWIQLHTNFPHHLQGVLNVLGCANGRDAVAAAIRGWDGATLDQTLADAGLCA ALIRTPDEWAALDQAKAIAGLPLFEIERIGDAPTESPGQRGADRPLAGVRVLDLSRIIAGPVAGRALAQHGAQVLMINGP HLPNIAPLVIDNGRGKRSALVDLREAQGREVLRGLAGAADVFLQAYRPGALAARGFGPEELARMRPGIVYVSVSAYGHEG PWAQRRGFDSLVQSASGIAFTERQAAGWNEPKHLPCQALDHATGYLAAFGAMAALARRATEGGSWHVRVSLAQTGRWLQS FGQIPEGWKAPEVALDDVRDCLASVESEFGRVLGVQPAEVLDETPAFFALPPSRVGAHEARWE >Mature_462_residues TPELALKHIWTLAGCDPSALRSVTLTGADPGLPSVYRVGTLASASIAATGLAAAEYHRLRTGRRQHVTVAMRRALASFRS ERYLRINDGPPPALRDPVMGFYETRDGRWIQLHTNFPHHLQGVLNVLGCANGRDAVAAAIRGWDGATLDQTLADAGLCAA LIRTPDEWAALDQAKAIAGLPLFEIERIGDAPTESPGQRGADRPLAGVRVLDLSRIIAGPVAGRALAQHGAQVLMINGPH LPNIAPLVIDNGRGKRSALVDLREAQGREVLRGLAGAADVFLQAYRPGALAARGFGPEELARMRPGIVYVSVSAYGHEGP WAQRRGFDSLVQSASGIAFTERQAAGWNEPKHLPCQALDHATGYLAAFGAMAALARRATEGGSWHVRVSLAQTGRWLQSF GQIPEGWKAPEVALDDVRDCLASVESEFGRVLGVQPAEVLDETPAFFALPPSRVGAHEARWE
Specific function: Catalyzes the transfer of the CoA moiety from formyl-CoA to oxalate [H]
COG id: COG1804
COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]
Homologues:
Organism=Homo sapiens, GI300863128, Length=200, Percent_Identity=30.5, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI300863124, Length=200, Percent_Identity=30.5, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI300863126, Length=147, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI42794625, Length=210, Percent_Identity=30.4761904761905, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI266456254, Length=210, Percent_Identity=30.4761904761905, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI266458397, Length=210, Percent_Identity=30.4761904761905, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI266458393, Length=210, Percent_Identity=30.4761904761905, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI42822893, Length=133, Percent_Identity=34.5864661654135, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI266458395, Length=133, Percent_Identity=34.5864661654135, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI87082093, Length=145, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1788717, Length=200, Percent_Identity=28.5, Blast_Score=80, Evalue=2e-16, Organism=Caenorhabditis elegans, GI32564160, Length=204, Percent_Identity=30.8823529411765, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI115535051, Length=204, Percent_Identity=31.3725490196078, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24648431, Length=189, Percent_Identity=34.3915343915344, Blast_Score=108, Evalue=6e-24, Organism=Drosophila melanogaster, GI24585488, Length=263, Percent_Identity=26.9961977186312, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003673 - InterPro: IPR017659 [H]
Pfam domain/function: PF02515 CoA_transf_3 [H]
EC number: =2.8.3.16 [H]
Molecular weight: Translated: 49540; Mature: 49409
Theoretical pI: Translated: 7.98; Mature: 7.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPELALKHIWTLAGCDPSALRSVTLTGADPGLPSVYRVGTLASASIAATGLAAAEYHRL CCHHHHHHHHHHHCCCCHHHHCEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHH RTGRRQHVTVAMRRALASFRSERYLRINDGPPPALRDPVMGFYETRDGRWIQLHTNFPHH HCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHCCCCHHEECCCCCEEEEECCCCHH LQGVLNVLGCANGRDAVAAAIRGWDGATLDQTLADAGLCAALIRTPDEWAALDQAKAIAG HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC LPLFEIERIGDAPTESPGQRGADRPLAGVRVLDLSRIIAGPVAGRALAQHGAQVLMINGP CCHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCHHHHHHHHHCCCEEEEECCC HLPNIAPLVIDNGRGKRSALVDLREAQGREVLRGLAGAADVFLQAYRPGALAARGFGPEE CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHH LARMRPGIVYVSVSAYGHEGPWAQRRGFDSLVQSASGIAFTERQAAGWNEPKHLPCQALD HHHHCCCEEEEEEEECCCCCCCHHHCCHHHHHHHCCCCEEECHHCCCCCCCCCCCHHHHH HATGYLAAFGAMAALARRATEGGSWHVRVSLAQTGRWLQSFGQIPEGWKAPEVALDDVRD HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH CLASVESEFGRVLGVQPAEVLDETPAFFALPPSRVGAHEARWE HHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCHHCCCCCCCCC >Mature Secondary Structure TPELALKHIWTLAGCDPSALRSVTLTGADPGLPSVYRVGTLASASIAATGLAAAEYHRL CHHHHHHHHHHHCCCCHHHHCEEEEECCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHH RTGRRQHVTVAMRRALASFRSERYLRINDGPPPALRDPVMGFYETRDGRWIQLHTNFPHH HCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHCCCCHHEECCCCCEEEEECCCCHH LQGVLNVLGCANGRDAVAAAIRGWDGATLDQTLADAGLCAALIRTPDEWAALDQAKAIAG HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC LPLFEIERIGDAPTESPGQRGADRPLAGVRVLDLSRIIAGPVAGRALAQHGAQVLMINGP CCHHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCHHHHHHHHHCCCEEEEECCC HLPNIAPLVIDNGRGKRSALVDLREAQGREVLRGLAGAADVFLQAYRPGALAARGFGPEE CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHH LARMRPGIVYVSVSAYGHEGPWAQRRGFDSLVQSASGIAFTERQAAGWNEPKHLPCQALD HHHHCCCEEEEEEEECCCCCCCHHHCCHHHHHHHCCCCEEECHHCCCCCCCCCCCHHHHH HATGYLAAFGAMAALARRATEGGSWHVRVSLAQTGRWLQSFGQIPEGWKAPEVALDDVRD HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH CLASVESEFGRVLGVQPAEVLDETPAFFALPPSRVGAHEARWE HHHHHHHHHHHCCCCCHHHHHHCCCCEEECCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]