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The map label for this gene is ltrA [H]

Identifier: 91784408

GI number: 91784408

Start: 3378479

End: 3379426

Strand: Reverse

Name: ltrA [H]

Synonym: Bxe_A1392

Alternate gene names: 91784408

Gene position: 3379426-3378479 (Counterclockwise)

Preceding gene: 91784414

Following gene: 91784406

Centisome position: 69.03

GC content: 64.45

Gene sequence:

>948_bases
TTGACAGACTGTCAAGGTTATTTTGACAAAGGCGCCGCCGTGGACGTCAATTCCCTGACCTTGCTGGTGGAGATTCTGGA
CGCGGGCAATCTCAGCGAAGCCGCGCGCCGGCTGAAAATGAGCCGCGCGAACGTGAGCTATCACCTGAACCAGCTGGAGC
GCTCTATCGGCCTGCAACTGGTTAGGCGCACCACGCGCCGGGTCGAGCCGACCGAGATCGGCCTGCAGCTGTACGAGCAC
GGCCGCGCGATCCAGAATGCGCTGCTCGCCGCGCGCGAATCCGTCACCACGCTCGGGCAAAGCCTGCAGGGCCGCGTGCG
GCTGAGCGTGCCGAGCGGTTATGGGCAGCTTGTCATGTCGGACTGGCTGATCGCGTTCAAGCGGCTTTATCCCGGCATCG
TGCTGGACGTGATGTTCGAGAACCGCGTTGAAGACCTGATGCGCGACGAAGTCGATATCGCCGTGCGCGTGATGTCCGAA
CCGCCGCAAAACCTGGTGGCGCGCGACATGGGGCCGGTCAGGTACGTGGCGTGTGCGTCGCCGGCTTTCGCGCAAACGCA
CGGCATGCCGCGGCAACTCGACGATCTGCGCACGGCGCCGCTGATTACCTCGGCCGTGGTCGGCAGGCAGTTGCGCGTGG
CCGCTTACTTGCGCGACGAGCGGCACGAAGTGCTGCTGGAGCCGACGCTCATCTCCGAGAACTTTCTTTTTTTACGCCAG
GCGGTGCTCGCCGGGCTGGGCGTGGGCCTCGTGCCGGACTACGTGGTGCAGGACGACCTGCGCCGTGGCGATGCGGTGAC
CGCGCTCGACGAATGGCGCTTGAGCATCTTCGGCACGCATATGTACATGCTGTATATGCCGAACCGGCATCACACGCGCG
CGGCGGCGACCTTCATCGATTTCATTTTGCAGCAGGCGCATGGCACGGGCAGAGGCGTGCCGGCGTGA

Upstream 100 bases:

>100_bases
GTCTCCTGGCTGTTATCGGTTGCAGGCGGAAAGGCATGCCGGGTCTGGCGAATTCTCCGATTGTGAGGCGGTCAAGGTTT
ATTGACAATCACATGGACGG

Downstream 100 bases:

>100_bases
TCGGTTGCGGGAAAGAGCTTTGCTGAACAGTACTTGAGGCCCATGACACGCGCCGCCCCGTCACTTCGATCCTGCCGCCT
CGAATCGCTTCACCGCGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MTDCQGYFDKGAAVDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQLVRRTTRRVEPTEIGLQLYEH
GRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGIVLDVMFENRVEDLMRDEVDIAVRVMSE
PPQNLVARDMGPVRYVACASPAFAQTHGMPRQLDDLRTAPLITSAVVGRQLRVAAYLRDERHEVLLEPTLISENFLFLRQ
AVLAGLGVGLVPDYVVQDDLRRGDAVTALDEWRLSIFGTHMYMLYMPNRHHTRAAATFIDFILQQAHGTGRGVPA

Sequences:

>Translated_315_residues
MTDCQGYFDKGAAVDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQLVRRTTRRVEPTEIGLQLYEH
GRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGIVLDVMFENRVEDLMRDEVDIAVRVMSE
PPQNLVARDMGPVRYVACASPAFAQTHGMPRQLDDLRTAPLITSAVVGRQLRVAAYLRDERHEVLLEPTLISENFLFLRQ
AVLAGLGVGLVPDYVVQDDLRRGDAVTALDEWRLSIFGTHMYMLYMPNRHHTRAAATFIDFILQQAHGTGRGVPA
>Mature_314_residues
TDCQGYFDKGAAVDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQLVRRTTRRVEPTEIGLQLYEHG
RAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMSDWLIAFKRLYPGIVLDVMFENRVEDLMRDEVDIAVRVMSEP
PQNLVARDMGPVRYVACASPAFAQTHGMPRQLDDLRTAPLITSAVVGRQLRVAAYLRDERHEVLLEPTLISENFLFLRQA
VLAGLGVGLVPDYVVQDDLRRGDAVTALDEWRLSIFGTHMYMLYMPNRHHTRAAATFIDFILQQAHGTGRGVPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=26.2798634812287, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081978, Length=259, Percent_Identity=28.5714285714286, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=26.3513513513513, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=24.6575342465753, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789639, Length=248, Percent_Identity=23.3870967741935, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787128, Length=273, Percent_Identity=23.0769230769231, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=23.3676975945017, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788706, Length=286, Percent_Identity=26.5734265734266, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788297, Length=142, Percent_Identity=33.0985915492958, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35195; Mature: 35064

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDCQGYFDKGAAVDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQL
CCCCCCCCCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRRTTRRVEPTEIGLQLYEHGRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
DWLIAFKRLYPGIVLDVMFENRVEDLMRDEVDIAVRVMSEPPQNLVARDMGPVRYVACAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCCCEEEEEECC
PAFAQTHGMPRQLDDLRTAPLITSAVVGRQLRVAAYLRDERHEVLLEPTLISENFLFLRQ
CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHHH
AVLAGLGVGLVPDYVVQDDLRRGDAVTALDEWRLSIFGTHMYMLYMPNRHHTRAAATFID
HHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHH
FILQQAHGTGRGVPA
HHHHHHCCCCCCCCC
>Mature Secondary Structure 
TDCQGYFDKGAAVDVNSLTLLVEILDAGNLSEAARRLKMSRANVSYHLNQLERSIGLQL
CCCCCCCCCCCEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRRTTRRVEPTEIGLQLYEHGRAIQNALLAARESVTTLGQSLQGRVRLSVPSGYGQLVMS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
DWLIAFKRLYPGIVLDVMFENRVEDLMRDEVDIAVRVMSEPPQNLVARDMGPVRYVACAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHCCCCEEEEEECC
PAFAQTHGMPRQLDDLRTAPLITSAVVGRQLRVAAYLRDERHEVLLEPTLISENFLFLRQ
CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHHH
AVLAGLGVGLVPDYVVQDDLRRGDAVTALDEWRLSIFGTHMYMLYMPNRHHTRAAATFID
HHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHH
FILQQAHGTGRGVPA
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]