| Definition | Burkholderia xenovorans LB400 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007951 |
| Length | 4,895,836 |
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The map label for this gene is yfhC [C]
Identifier: 91784309
GI number: 91784309
Start: 3269580
End: 3270122
Strand: Reverse
Name: yfhC [C]
Synonym: Bxe_A1491
Alternate gene names: 91784309
Gene position: 3270122-3269580 (Counterclockwise)
Preceding gene: 91784310
Following gene: 91784307
Centisome position: 66.79
GC content: 65.93
Gene sequence:
>543_bases GTGAGTCTGACCGTCCCGACGCAGGCCGCCGCAGCAGCCGCGAACTATCCGCCGCAGGGTTTGACGCCCACGCACGAGCA GATCGTGCGGCATCTGCGGCATTCGAGCCGGGTGGCCGAACGGGCGACGCTGCTGGGGCATCATCCGTTTGGCGCGGTGC TGGTCGGGCCGGACCAGGAGACGGTGCTGATGGAGCAGGGCAACGTCGACACGGTGAATCACGCCGAGTCGGTGCTGGCG CGCGTGGCCGCGCTGAACTTCACGCCGGCGTATTTGTGGAGTTGCACGCTGTACACGTCGGTCGAGCCTTGCTGTATGTG CGCCGGGACCATGTATTGGGCCAACATCGGCCGGGTGGTGTTCGGCATGACCGAAAAGCGCCTGCTGGAGGCGACCGGCG CTCACGCCGAGAATCCGACCATGAGCGTGGATTGCCGGTATGTCTTCGATCATTGCCAGAAACCGGTCGAGGTGATCGGG CCGGTCGCCGAGGTGGAGGCCGAGGTGATGGAGGTTCAGCGTCGATTCTGGAGCGGCCGGTAG
Upstream 100 bases:
>100_bases GGAACTGCTGCGTTTGAACTGGTTCGTGCAGGGCGTGGACGGTTCGCTGCCGAAGTAGAATTTGCTTCGCTACGCTAACT ATTGTTCAAGGAGATCGCCC
Downstream 100 bases:
>100_bases CGGCTGTTTCGTGATTTCGTGAAAGCGGCGCTTCTGCGTTGCTACGGTATCGAGGCGGCGTCCCACGCCGGTCTCGCGCA AACGGCGACCAGGCATGCCT
Product: putative cytidine/deoxycytidylate deaminase family protein
Products: NA
Alternate protein names: Cytosine/Adenosine Deaminase; Cytidine/Deoxycytidine Deaminase; Purine Deaminase Protein; CMP/DCMP Deaminase; Cytidine/Deoxycytidylate Deaminase; Guanine Deaminase; Cytosine Deaminase; Cytidine And Deoxycytidylate Deaminase
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MSLTVPTQAAAAAANYPPQGLTPTHEQIVRHLRHSSRVAERATLLGHHPFGAVLVGPDQETVLMEQGNVDTVNHAESVLA RVAALNFTPAYLWSCTLYTSVEPCCMCAGTMYWANIGRVVFGMTEKRLLEATGAHAENPTMSVDCRYVFDHCQKPVEVIG PVAEVEAEVMEVQRRFWSGR
Sequences:
>Translated_180_residues MSLTVPTQAAAAAANYPPQGLTPTHEQIVRHLRHSSRVAERATLLGHHPFGAVLVGPDQETVLMEQGNVDTVNHAESVLA RVAALNFTPAYLWSCTLYTSVEPCCMCAGTMYWANIGRVVFGMTEKRLLEATGAHAENPTMSVDCRYVFDHCQKPVEVIG PVAEVEAEVMEVQRRFWSGR >Mature_179_residues SLTVPTQAAAAAANYPPQGLTPTHEQIVRHLRHSSRVAERATLLGHHPFGAVLVGPDQETVLMEQGNVDTVNHAESVLAR VAALNFTPAYLWSCTLYTSVEPCCMCAGTMYWANIGRVVFGMTEKRLLEATGAHAENPTMSVDCRYVFDHCQKPVEVIGP VAEVEAEVMEVQRRFWSGR
Specific function: Mutation In This Protein Makes E.Coli Resistant To The Toxic Proteins Encoded By The Gef Gene Family. [C]
COG id: COG0590
COG function: function code FJ; Cytosine/adenosine deaminases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19780; Mature: 19649
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTVPTQAAAAAANYPPQGLTPTHEQIVRHLRHSSRVAERATLLGHHPFGAVLVGPDQE CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC TVLMEQGNVDTVNHAESVLARVAALNFTPAYLWSCTLYTSVEPCCMCAGTMYWANIGRVV EEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH FGMTEKRLLEATGAHAENPTMSVDCRYVFDHCQKPVEVIGPVAEVEAEVMEVQRRFWSGR HCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SLTVPTQAAAAAANYPPQGLTPTHEQIVRHLRHSSRVAERATLLGHHPFGAVLVGPDQE CCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC TVLMEQGNVDTVNHAESVLARVAALNFTPAYLWSCTLYTSVEPCCMCAGTMYWANIGRVV EEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH FGMTEKRLLEATGAHAENPTMSVDCRYVFDHCQKPVEVIGPVAEVEAEVMEVQRRFWSGR HCCHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA