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The map label for this gene is virD4 [H]

Identifier: 91784039

GI number: 91784039

Start: 2962622

End: 2964349

Strand: Reverse

Name: virD4 [H]

Synonym: Bxe_A1764

Alternate gene names: 91784039

Gene position: 2964349-2962622 (Counterclockwise)

Preceding gene: 91784040

Following gene: 91784038

Centisome position: 60.55

GC content: 63.89

Gene sequence:

>1728_bases
ATGACGACGCACGCATCGCCCGCATACCCCGGTTCCCTGCCTGCGATTGTCGTGGGCGTATGGCGTGGCCGTTACCTGCG
GTTCGCCGGCCAGCAGTTCGTGCTGCTGGCCGCACCCGCGCGCTCGGGCAAGGGCGTTGGCGTCGTGATCCCGAACCTGC
TCAGTTTTCCGGATTCGGTCGTGGTGCTCGACGTGAAGCAGGAGAACTACGCCGTGACAGCGGGTTTCAGAAAAGCCTGT
GGGCAAGACGTGTACCTTTTCAATCCGTTCGCCGAGGACGGTCGCACGCATCGCTACAACCCGCTGTCGGCGATCTCGGA
CGGTCTGTTCCGGGTGGGCGACATTCTCGCGATCGGCTACGCGCTGTATCCACCCGGCGGCCACGACGATTTCTGGAAAG
ACCAGGCCCGAAACCTGTTCCTTGCCATCGTATTGCTGCTGTGCGAGTGGCGCGATGCGCGTCGCGCCGGCAAGGGCACG
TCGATCCCGAATTATCCGGTCACGATGGGCGAGGTACTGCGGCAGTCCTCGGGCAACGGCATGCCGGTCAAGACGTATCT
GCAGCGCGCGCTGGTTCAGCATCGGGATCTGCTGTCCGGGCAGTGTGTCGACGCGCTGAACCGCTTCCTGTCGAACGACG
ACAAGGTGCTGGCGAGTGTGCTGGCGACGTTCAACGCGCCGCTGACAATCTGGGCCAATCCGGTTGTCGACGCAGCCACC
AGCGCGAACGATTTCGATCCGCGCGATCTGCGTCGGCGCCGTATCTCCGTCTATATCGGCGTGACACCCGATCACCTGGC
CGAAGCGGCGCTGATCGTGAACCTGCTGTTTTCGCAGGTGATCAACCTGAATACGAAGCAGCTGCCCGAGGCTGATCCCA
CGCTCCGGTTCCAGTGTCTGCTGCTGCTCGACGAGATGACGGCGATCGGCAAGATCCACATTCTTGCCCGCGCGGTGGCC
TACATGGCGGGCTACAACCTGCGCCTGCTGTCGATCGTCCAGTCGATCGCGCAGCTCGAGTCGGTCTATGGACGGGCCGA
TGCGCGCACCTTCGTCACGAACCACGCGATGCAGATTCTCTATGCGCCGCGCGAGCAGAAGGACGCCAACGACTACTCAG
AGATGCTGGGCACGCTGACGGATCAGTCGCGCAGCGTCAGTCGCTCGAACGCGATCTTCGGCGGGCGGGGCGGGTCGAGC
GAGAACGTGTCCGAGCAGCGCCGGCCGCTGCTGTTGCCGCAGGAACTGAAGGAGCTGGGGCGCGAGAAGGAAATCATCGT
GCTCGAAAACACCAAGCCGATCCTGGCCGACAAGCTCTGCTACTGGCGCGATCCCGAGTTTGCCGCGCGCGTGATGACCG
CACCCGAGGTGCCCGCGATGAACCTCGCGCACTTCAGCGCCGTGGTCGAAAGGCGGTTGCGTGACCTGCATCCGGACGAG
ATTGATCCGGACGGCGCGGGCCTGATCAACCTGCCGCCTGAATACCTCGAAGTGCTGCAGGCATGGGACCCGCGCGACCT
GCCGCCGAACCTGGCAGATATCAGCGAGGACGACGCGGTGGCTTACGTGGAGCGGCATTTCATGCTGCTCGGCGTGCCCG
CGAAGAAAGTCGAGCTAGCCCGCCGCCGTCTGGTTGCTGGTGATCTCGATGTCGCCGAACTTGATTTCGTTGCGCCGGCA
CGGCGCGCCATGTCGAATGGTTCGCAGGCGACGGGAGTGCTGCAATGA

Upstream 100 bases:

>100_bases
TGTTCGGGCTGCACGCATTGTTCGAACGCTCGGGCCGACGCCGTCTCTACGGCAGCGCGCGCTTTGCGAGGGAGGCGGAG
ATCCGCCGGGCGGGACTGCT

Downstream 100 bases:

>100_bases
GCACGCCCTATGCGAACGAGGCCGAGCGCGCGCGTGCCGCCCTTGCTGCGGTCCCGGCCGACGACTACGCGACCTGGGTC
GATATGGCATTCGCGCTCAA

Product: putative type IV secretory pathway protein VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 575; Mature: 574

Protein sequence:

>575_residues
MTTHASPAYPGSLPAIVVGVWRGRYLRFAGQQFVLLAAPARSGKGVGVVIPNLLSFPDSVVVLDVKQENYAVTAGFRKAC
GQDVYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGYALYPPGGHDDFWKDQARNLFLAIVLLLCEWRDARRAGKGT
SIPNYPVTMGEVLRQSSGNGMPVKTYLQRALVQHRDLLSGQCVDALNRFLSNDDKVLASVLATFNAPLTIWANPVVDAAT
SANDFDPRDLRRRRISVYIGVTPDHLAEAALIVNLLFSQVINLNTKQLPEADPTLRFQCLLLLDEMTAIGKIHILARAVA
YMAGYNLRLLSIVQSIAQLESVYGRADARTFVTNHAMQILYAPREQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRGGSS
ENVSEQRRPLLLPQELKELGREKEIIVLENTKPILADKLCYWRDPEFAARVMTAPEVPAMNLAHFSAVVERRLRDLHPDE
IDPDGAGLINLPPEYLEVLQAWDPRDLPPNLADISEDDAVAYVERHFMLLGVPAKKVELARRRLVAGDLDVAELDFVAPA
RRAMSNGSQATGVLQ

Sequences:

>Translated_575_residues
MTTHASPAYPGSLPAIVVGVWRGRYLRFAGQQFVLLAAPARSGKGVGVVIPNLLSFPDSVVVLDVKQENYAVTAGFRKAC
GQDVYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGYALYPPGGHDDFWKDQARNLFLAIVLLLCEWRDARRAGKGT
SIPNYPVTMGEVLRQSSGNGMPVKTYLQRALVQHRDLLSGQCVDALNRFLSNDDKVLASVLATFNAPLTIWANPVVDAAT
SANDFDPRDLRRRRISVYIGVTPDHLAEAALIVNLLFSQVINLNTKQLPEADPTLRFQCLLLLDEMTAIGKIHILARAVA
YMAGYNLRLLSIVQSIAQLESVYGRADARTFVTNHAMQILYAPREQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRGGSS
ENVSEQRRPLLLPQELKELGREKEIIVLENTKPILADKLCYWRDPEFAARVMTAPEVPAMNLAHFSAVVERRLRDLHPDE
IDPDGAGLINLPPEYLEVLQAWDPRDLPPNLADISEDDAVAYVERHFMLLGVPAKKVELARRRLVAGDLDVAELDFVAPA
RRAMSNGSQATGVLQ
>Mature_574_residues
TTHASPAYPGSLPAIVVGVWRGRYLRFAGQQFVLLAAPARSGKGVGVVIPNLLSFPDSVVVLDVKQENYAVTAGFRKACG
QDVYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGYALYPPGGHDDFWKDQARNLFLAIVLLLCEWRDARRAGKGTS
IPNYPVTMGEVLRQSSGNGMPVKTYLQRALVQHRDLLSGQCVDALNRFLSNDDKVLASVLATFNAPLTIWANPVVDAATS
ANDFDPRDLRRRRISVYIGVTPDHLAEAALIVNLLFSQVINLNTKQLPEADPTLRFQCLLLLDEMTAIGKIHILARAVAY
MAGYNLRLLSIVQSIAQLESVYGRADARTFVTNHAMQILYAPREQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRGGSSE
NVSEQRRPLLLPQELKELGREKEIIVLENTKPILADKLCYWRDPEFAARVMTAPEVPAMNLAHFSAVVERRLRDLHPDEI
DPDGAGLINLPPEYLEVLQAWDPRDLPPNLADISEDDAVAYVERHFMLLGVPAKKVELARRRLVAGDLDVAELDFVAPAR
RAMSNGSQATGVLQ

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 63504; Mature: 63373

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHASPAYPGSLPAIVVGVWRGRYLRFAGQQFVLLAAPARSGKGVGVVIPNLLSFPDSV
CCCCCCCCCCCCCCHHHHHHHCCCEEEECCCEEEEEEECCCCCCCCEEECCHHHCCCCCE
VVLDVKQENYAVTAGFRKACGQDVYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGY
EEEEEECCCEEEECCHHHHCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCE
ALYPPGGHDDFWKDQARNLFLAIVLLLCEWRDARRAGKGTSIPNYPVTMGEVLRQSSGNG
EECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC
MPVKTYLQRALVQHRDLLSGQCVDALNRFLSNDDKVLASVLATFNAPLTIWANPVVDAAT
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCHHHHCC
SANDFDPRDLRRRRISVYIGVTPDHLAEAALIVNLLFSQVINLNTKQLPEADPTLRFQCL
CCCCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHH
LLLDEMTAIGKIHILARAVAYMAGYNLRLLSIVQSIAQLESVYGRADARTFVTNHAMQIL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEE
YAPREQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRGGSSENVSEQRRPLLLPQELKELG
ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHCCCCCCHHHHHHCC
REKEIIVLENTKPILADKLCYWRDPEFAARVMTAPEVPAMNLAHFSAVVERRLRDLHPDE
CCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC
IDPDGAGLINLPPEYLEVLQAWDPRDLPPNLADISEDDAVAYVERHFMLLGVPAKKVELA
CCCCCCCEECCCHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHCEEEEECCHHHHHHH
RRRLVAGDLDVAELDFVAPARRAMSNGSQATGVLQ
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TTHASPAYPGSLPAIVVGVWRGRYLRFAGQQFVLLAAPARSGKGVGVVIPNLLSFPDSV
CCCCCCCCCCCCCHHHHHHHCCCEEEECCCEEEEEEECCCCCCCCEEECCHHHCCCCCE
VVLDVKQENYAVTAGFRKACGQDVYLFNPFAEDGRTHRYNPLSAISDGLFRVGDILAIGY
EEEEEECCCEEEECCHHHHCCCCEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCE
ALYPPGGHDDFWKDQARNLFLAIVLLLCEWRDARRAGKGTSIPNYPVTMGEVLRQSSGNG
EECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC
MPVKTYLQRALVQHRDLLSGQCVDALNRFLSNDDKVLASVLATFNAPLTIWANPVVDAAT
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCHHHHCC
SANDFDPRDLRRRRISVYIGVTPDHLAEAALIVNLLFSQVINLNTKQLPEADPTLRFQCL
CCCCCCHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHH
LLLDEMTAIGKIHILARAVAYMAGYNLRLLSIVQSIAQLESVYGRADARTFVTNHAMQIL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEE
YAPREQKDANDYSEMLGTLTDQSRSVSRSNAIFGGRGGSSENVSEQRRPLLLPQELKELG
ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHCCCCCCHHHHHHCC
REKEIIVLENTKPILADKLCYWRDPEFAARVMTAPEVPAMNLAHFSAVVERRLRDLHPDE
CCCCEEEEECCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC
IDPDGAGLINLPPEYLEVLQAWDPRDLPPNLADISEDDAVAYVERHFMLLGVPAKKVELA
CCCCCCCEECCCHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHCEEEEECCHHHHHHH
RRRLVAGDLDVAELDFVAPARRAMSNGSQATGVLQ
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]