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The map label for this gene is kdgR [H]

Identifier: 91783829

GI number: 91783829

Start: 2736675

End: 2737757

Strand: Reverse

Name: kdgR [H]

Synonym: Bxe_A1983

Alternate gene names: 91783829

Gene position: 2737757-2736675 (Counterclockwise)

Preceding gene: 91783830

Following gene: 91783828

Centisome position: 55.92

GC content: 67.41

Gene sequence:

>1083_bases
ATGAGCACGACGCCGCAGCCCATGCCGCGCCGCGCGACGATCACCGACGTCGCGCGCGAAGCCGGCACCGGCAAGACCAG
CATCTCGCGCTATCTGAACGGCGAGATGAGCGTGCTGTCGCCCGAACTGCGCGCACGGATCGAAGCCGCGATCGCACGTC
TGGACTATCAGCCGAACCAGATGGCGCGCGGCCTCAAACGTGGCCGCAACCGTCTGATCGGCATGCTGCTGGCCGACCTG
ACCAATCCCTACTCGGTCGAAGTGCTGCAAGGTGTCGAAGCGGCCTGTCACGCGCTCGGGCTGATGCCGCTGATCTGCCA
TGCGGCGAACGAAGTCGAGATGGAGCGGCGCTATCTGCAACTGCTCACCACGTACCGGGTGGAAGGCGTGATCGTCAACG
CAACCGGCGTGCGCGAGGAAACGCTGCGGCCGGTGGGCGGAGGCGGGATTCCGGCGGTGCTGGTCGACCGTCTGGTGGAC
GGACTGGTCGCGGATATGGTCGGTCTCGACAACCGGGCGGCCGCCGAACTCGGCACGCGGCATCTGCTGGACAATGGTTT
CGACGATATCTGGTTCGTGGTCCAGCCTTTCGAGCAGGTCAGCTCGCGGCAATTGCGCGAAGCAGCGTTCCGCGAGACGA
TGAGCGCCCGGTGTGCCGAAGGCGGAAACGGCTGCGGCGAGGGCGCGGCATGCAGTCACACGCTGGTGCTGAATCTCGCG
GATGCAGCAGAGGTCGAGCGTGGCCTCGCCGAGCTGGATCGGGCAATCGATGCAGCCGCCGGCGCCGCGGGCAAGCCCGC
GCGCATTGCCCTGTTCGCCGCCAACGCACCCGTCGCGCTGCGTCTCGCGCTGCATCTGAAAGCGCGCTACGGTGCCGACT
GGCAAGCCCGCGCCGCGCTGCTTTCCATCGACGACCCCGACTGGGCCGAACTGACCGGCGTCACGACGATCCGCCAGCCG
ACCTACGAGATCGGCTACCGGGCGGTCGAGTTCCTGCACGAGCGCATCGAAGGTATCCAGACCACCGCGCGCGACTGCCT
GCTGCCGGGCGAATTGATCGTGCGCGCCTCCACTTTGCGCTGA

Upstream 100 bases:

>100_bases
AACATCGTCAACCGCGAAGTGCTCGCCGGATGAACCGGACGACAAGCCGAACCACAAGCCGAACCACAAGCCGCACCACA
AGCCGAACCACGAGGAACCG

Downstream 100 bases:

>100_bases
ATTCGCGCCGATCTGCGATCATTCGGGCTGCGGCACGCAGCGGGTGCGCGCCGGTCATCGCAAGGAAACTCATGGTTGTT
GCACCGCTTACCCTCTCGAG

Product: LacI family transcription regulator

Products: NA

Alternate protein names: Kdg operon repressor [H]

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MSTTPQPMPRRATITDVAREAGTGKTSISRYLNGEMSVLSPELRARIEAAIARLDYQPNQMARGLKRGRNRLIGMLLADL
TNPYSVEVLQGVEAACHALGLMPLICHAANEVEMERRYLQLLTTYRVEGVIVNATGVREETLRPVGGGGIPAVLVDRLVD
GLVADMVGLDNRAAAELGTRHLLDNGFDDIWFVVQPFEQVSSRQLREAAFRETMSARCAEGGNGCGEGAACSHTLVLNLA
DAAEVERGLAELDRAIDAAAGAAGKPARIALFAANAPVALRLALHLKARYGADWQARAALLSIDDPDWAELTGVTTIRQP
TYEIGYRAVEFLHERIEGIQTTARDCLLPGELIVRASTLR

Sequences:

>Translated_360_residues
MSTTPQPMPRRATITDVAREAGTGKTSISRYLNGEMSVLSPELRARIEAAIARLDYQPNQMARGLKRGRNRLIGMLLADL
TNPYSVEVLQGVEAACHALGLMPLICHAANEVEMERRYLQLLTTYRVEGVIVNATGVREETLRPVGGGGIPAVLVDRLVD
GLVADMVGLDNRAAAELGTRHLLDNGFDDIWFVVQPFEQVSSRQLREAAFRETMSARCAEGGNGCGEGAACSHTLVLNLA
DAAEVERGLAELDRAIDAAAGAAGKPARIALFAANAPVALRLALHLKARYGADWQARAALLSIDDPDWAELTGVTTIRQP
TYEIGYRAVEFLHERIEGIQTTARDCLLPGELIVRASTLR
>Mature_359_residues
STTPQPMPRRATITDVAREAGTGKTSISRYLNGEMSVLSPELRARIEAAIARLDYQPNQMARGLKRGRNRLIGMLLADLT
NPYSVEVLQGVEAACHALGLMPLICHAANEVEMERRYLQLLTTYRVEGVIVNATGVREETLRPVGGGGIPAVLVDRLVDG
LVADMVGLDNRAAAELGTRHLLDNGFDDIWFVVQPFEQVSSRQLREAAFRETMSARCAEGGNGCGEGAACSHTLVLNLAD
AAEVERGLAELDRAIDAAAGAAGKPARIALFAANAPVALRLALHLKARYGADWQARAALLSIDDPDWAELTGVTTIRQPT
YEIGYRAVEFLHERIEGIQTTARDCLLPGELIVRASTLR

Specific function: Transcriptional repressor of the kdg operon for pectin utilization [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=331, Percent_Identity=29.0030211480363, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790369, Length=356, Percent_Identity=24.7191011235955, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788474, Length=181, Percent_Identity=29.8342541436464, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI48994940, Length=184, Percent_Identity=31.5217391304348, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789202, Length=182, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787906, Length=185, Percent_Identity=31.3513513513514, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787948, Length=190, Percent_Identity=28.9473684210526, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787580, Length=193, Percent_Identity=27.979274611399, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790689, Length=204, Percent_Identity=25.9803921568627, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786540, Length=355, Percent_Identity=24.2253521126761, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790715, Length=168, Percent_Identity=27.9761904761905, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38947; Mature: 38816

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTPQPMPRRATITDVAREAGTGKTSISRYLNGEMSVLSPELRARIEAAIARLDYQPNQ
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCHHH
MARGLKRGRNRLIGMLLADLTNPYSVEVLQGVEAACHALGLMPLICHAANEVEMERRYLQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LLTTYRVEGVIVNATGVREETLRPVGGGGIPAVLVDRLVDGLVADMVGLDNRAAAELGTR
HHHHHHHCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
HLLDNGFDDIWFVVQPFEQVSSRQLREAAFRETMSARCAEGGNGCGEGAACSHTLVLNLA
HHHHCCCCCEEHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEH
DAAEVERGLAELDRAIDAAAGAAGKPARIALFAANAPVALRLALHLKARYGADWQARAAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEHHHHHHHHHCCCCHHHCEEE
LSIDDPDWAELTGVTTIRQPTYEIGYRAVEFLHERIEGIQTTARDCLLPGELIVRASTLR
EECCCCCHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEECCCC
>Mature Secondary Structure 
STTPQPMPRRATITDVAREAGTGKTSISRYLNGEMSVLSPELRARIEAAIARLDYQPNQ
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCHHH
MARGLKRGRNRLIGMLLADLTNPYSVEVLQGVEAACHALGLMPLICHAANEVEMERRYLQ
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LLTTYRVEGVIVNATGVREETLRPVGGGGIPAVLVDRLVDGLVADMVGLDNRAAAELGTR
HHHHHHHCEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
HLLDNGFDDIWFVVQPFEQVSSRQLREAAFRETMSARCAEGGNGCGEGAACSHTLVLNLA
HHHHCCCCCEEHEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEH
DAAEVERGLAELDRAIDAAAGAAGKPARIALFAANAPVALRLALHLKARYGADWQARAAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEHHHHHHHHHCCCCHHHCEEE
LSIDDPDWAELTGVTTIRQPTYEIGYRAVEFLHERIEGIQTTARDCLLPGELIVRASTLR
EECCCCCHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]